Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Gm18061-201ENSMUST00000208350 562 ntBASIC14.47□□□□□ -0.09
Ushbp1Q8R370 Gm18063-201ENSMUST00000208529 568 ntBASIC14.47□□□□□ -0.09
Ushbp1Q8R370 Gm18052-201ENSMUST00000208750 559 ntBASIC14.47□□□□□ -0.09
Ushbp1Q8R370 Lsm7-208ENSMUST00000220225 1129 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Ushbp1Q8R370 Nsmce1-201ENSMUST00000033006 1120 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Ushbp1Q8R370 Upk2-201ENSMUST00000047740 1083 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Ushbp1Q8R370 Gm13199-201ENSMUST00000071016 747 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Ushbp1Q8R370 Gm16372-201ENSMUST00000073088 450 ntBASIC14.47□□□□□ -0.09
Ushbp1Q8R370 Cryba4-201ENSMUST00000086629 746 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Ushbp1Q8R370 Ywhab-201ENSMUST00000018470 3013 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Ushbp1Q8R370 Gm26519-201ENSMUST00000181193 2249 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Ushbp1Q8R370 B230344G16Rik-201ENSMUST00000180782 2024 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Ushbp1Q8R370 Caprin1-201ENSMUST00000028607 6169 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Ushbp1Q8R370 Traf6-201ENSMUST00000004949 6169 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Ushbp1Q8R370 Arcn1-201ENSMUST00000034607 4072 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Ushbp1Q8R370 Arid3a-201ENSMUST00000019708 5361 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
Ushbp1Q8R370 Ptpn7-203ENSMUST00000187985 1990 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
Ushbp1Q8R370 Trp53i11-202ENSMUST00000111266 2703 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Ushbp1Q8R370 Klc2-202ENSMUST00000113727 2874 ntTSL 5 BASIC14.47□□□□□ -0.09
Ushbp1Q8R370 Alas1-201ENSMUST00000074082 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
Ushbp1Q8R370 Allc-202ENSMUST00000110917 1384 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Ushbp1Q8R370 Syt2-204ENSMUST00000188842 3386 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Ushbp1Q8R370 Xrcc3-201ENSMUST00000021715 2422 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Ushbp1Q8R370 Kpna7-203ENSMUST00000116454 1500 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
Ushbp1Q8R370 Plaur-201ENSMUST00000002284 1506 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Ushbp1Q8R370 Rubcn-203ENSMUST00000115105 5255 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.09
Ushbp1Q8R370 Afap1l1-201ENSMUST00000120472 3444 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Ushbp1Q8R370 Fgfr1-203ENSMUST00000119398 3789 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Ushbp1Q8R370 Rp2-202ENSMUST00000115387 4498 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Ushbp1Q8R370 Mb21d1-201ENSMUST00000034898 3231 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Ushbp1Q8R370 Fbxl5-211ENSMUST00000196483 2814 ntAPPRIS ALT1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Ushbp1Q8R370 Gm22018-201ENSMUST00000104357 131 ntBASIC14.46□□□□□ -0.09
Ushbp1Q8R370 Gm12203-201ENSMUST00000118235 598 ntBASIC14.46□□□□□ -0.09
Ushbp1Q8R370 Gm12209-201ENSMUST00000120089 596 ntBASIC14.46□□□□□ -0.09
Ushbp1Q8R370 Gm10156-201ENSMUST00000122364 462 ntBASIC14.46□□□□□ -0.09
Ushbp1Q8R370 Gm14508-201ENSMUST00000127049 901 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Ushbp1Q8R370 Pelp1-202ENSMUST00000135148 562 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Ushbp1Q8R370 Gm11752-201ENSMUST00000143291 510 ntTSL 2 BASIC14.46□□□□□ -0.09
Ushbp1Q8R370 AC159747.1-201ENSMUST00000219903 265 ntBASIC14.46□□□□□ -0.09
Ushbp1Q8R370 AC140406.1-201ENSMUST00000226481 465 ntBASIC14.46□□□□□ -0.09
Ushbp1Q8R370 Ndufb3-201ENSMUST00000027193 763 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Ushbp1Q8R370 Gng8-201ENSMUST00000078182 910 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Ushbp1Q8R370 Foxred2-202ENSMUST00000117725 4347 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Ushbp1Q8R370 Ptpru-203ENSMUST00000105987 5484 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Ushbp1Q8R370 Epb41-203ENSMUST00000084253 5141 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
Ushbp1Q8R370 Gm36745-201ENSMUST00000213455 1594 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Ushbp1Q8R370 Duoxa2-201ENSMUST00000028656 1592 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Ushbp1Q8R370 Rcan2-202ENSMUST00000044895 3363 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
Ushbp1Q8R370 Gm39377-201ENSMUST00000214587 2533 ntTSL 5 BASIC14.46□□□□□ -0.1
Ushbp1Q8R370 Gm43796-201ENSMUST00000202853 2012 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.1
Ushbp1Q8R370 Spag1-201ENSMUST00000047348 3646 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Ushbp1Q8R370 Klhl26-205ENSMUST00000210250 2974 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
Ushbp1Q8R370 Lztr1-201ENSMUST00000023444 3112 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.1
Ushbp1Q8R370 Kctd11-201ENSMUST00000050555 3146 ntAPPRIS P1 BASIC14.46□□□□□ -0.1
Ushbp1Q8R370 Evi5l-202ENSMUST00000176072 3932 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.1
Ushbp1Q8R370 Serpinb12-201ENSMUST00000081277 1689 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Ushbp1Q8R370 Eif4enif1-202ENSMUST00000110048 3712 ntTSL 5 BASIC14.45□□□□□ -0.1
Ushbp1Q8R370 Cbx6-202ENSMUST00000109625 3056 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Ushbp1Q8R370 Eif3j1-201ENSMUST00000028668 5413 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Ushbp1Q8R370 Cdc14a-202ENSMUST00000106491 4292 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Ushbp1Q8R370 Mettl17-206ENSMUST00000164902 1461 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
Ushbp1Q8R370 Pcgf5-211ENSMUST00000225920 6443 ntBASIC14.45□□□□□ -0.1
Ushbp1Q8R370 Adam22-207ENSMUST00000115388 9161 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
Ushbp1Q8R370 Ankfn1-201ENSMUST00000050983 2665 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Ushbp1Q8R370 Mir686-201ENSMUST00000102174 109 ntBASIC14.45□□□□□ -0.1
Ushbp1Q8R370 Erich1-201ENSMUST00000110813 1557 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Ushbp1Q8R370 Styxl1-202ENSMUST00000111161 963 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Ushbp1Q8R370 Rhox2f-201ENSMUST00000115173 799 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
Ushbp1Q8R370 BC046401-201ENSMUST00000155786 847 ntTSL 3 BASIC14.45□□□□□ -0.1
Ushbp1Q8R370 Dcdc2b-203ENSMUST00000179209 864 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
Ushbp1Q8R370 Gm26602-201ENSMUST00000181321 285 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
Ushbp1Q8R370 Gm27682-201ENSMUST00000183930 110 ntBASIC14.45□□□□□ -0.1
Ushbp1Q8R370 Hmgcll1-207ENSMUST00000183979 1136 ntTSL 5 BASIC14.45□□□□□ -0.1
Ushbp1Q8R370 Prr29-204ENSMUST00000188561 592 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
Ushbp1Q8R370 Prr29-206ENSMUST00000190795 822 ntTSL 5 BASIC14.45□□□□□ -0.1
Ushbp1Q8R370 Spc24-204ENSMUST00000216057 627 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Ushbp1Q8R370 AC164612.1-201ENSMUST00000216699 517 ntTSL 5 BASIC14.45□□□□□ -0.1
Ushbp1Q8R370 Ormdl2-204ENSMUST00000219524 724 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
Ushbp1Q8R370 AC093022.5-201ENSMUST00000226841 1079 ntBASIC14.45□□□□□ -0.1
Ushbp1Q8R370 Rad23b-201ENSMUST00000030134 3810 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Ushbp1Q8R370 Ier3-201ENSMUST00000003635 1131 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Ushbp1Q8R370 Tbr1-201ENSMUST00000048934 3977 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Ushbp1Q8R370 Pphln1-202ENSMUST00000068457 3816 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Ushbp1Q8R370 Slc35d1-203ENSMUST00000150285 4242 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Ushbp1Q8R370 Eml6-201ENSMUST00000058902 8083 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
Ushbp1Q8R370 Rbbp5-207ENSMUST00000190997 2856 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Ushbp1Q8R370 Ckm-203ENSMUST00000208710 2742 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Ushbp1Q8R370 Cdk11b-201ENSMUST00000067081 2595 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
Ushbp1Q8R370 Eps8l3-201ENSMUST00000037375 2271 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Ushbp1Q8R370 Prrx1-204ENSMUST00000174397 6527 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Ushbp1Q8R370 Pyroxd2-201ENSMUST00000076505 3119 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Ushbp1Q8R370 Lrrc7-205ENSMUST00000200137 7321 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Ushbp1Q8R370 Rhot1-204ENSMUST00000092857 3687 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
Ushbp1Q8R370 Hoxb13-201ENSMUST00000062709 2206 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Ushbp1Q8R370 Pglyrp2-202ENSMUST00000170392 2068 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Ushbp1Q8R370 Tsn-201ENSMUST00000027623 7063 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Ushbp1Q8R370 Dcun1d3-206ENSMUST00000207233 2917 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
Ushbp1Q8R370 Plk-ps1-201ENSMUST00000119494 1787 ntBASIC14.45□□□□□ -0.1
Ushbp1Q8R370 Cfap77-204ENSMUST00000189711 1759 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
Ushbp1Q8R370 Rbm14-201ENSMUST00000006625 3165 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Retrieved 100 of 76,532 protein–RNA pairs in 31.7 ms