Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Rtn4rl1-201ENSMUST00000102514 3525 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Limch1Q3UH68 Cacna1g-207ENSMUST00000107789 8383 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
Limch1Q3UH68 BC039966-201ENSMUST00000141582 1371 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Limch1Q3UH68 Rbbp5-207ENSMUST00000190997 2856 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Limch1Q3UH68 Fam198a-204ENSMUST00000215990 2149 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Limch1Q3UH68 Lztr1-201ENSMUST00000023444 3112 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Limch1Q3UH68 Kcnd3-201ENSMUST00000079169 2102 ntAPPRIS P4 TSL 1 (best) BASIC15.2■□□□□ 0.02
Limch1Q3UH68 Gspt1-205ENSMUST00000167571 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Limch1Q3UH68 Cd34-201ENSMUST00000016638 2454 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Limch1Q3UH68 Ccdc25-201ENSMUST00000022614 2230 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Limch1Q3UH68 Gm33543-203ENSMUST00000211096 1722 ntAPPRIS P5 TSL 5 BASIC15.2■□□□□ 0.02
Limch1Q3UH68 Cbx6-202ENSMUST00000109625 3056 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Limch1Q3UH68 Wnt7a-201ENSMUST00000032180 3172 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Limch1Q3UH68 Dcun1d3-206ENSMUST00000207233 2917 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
Limch1Q3UH68 Rpn1-201ENSMUST00000032143 3633 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Limch1Q3UH68 Zranb2-201ENSMUST00000029831 2540 ntTSL 5 BASIC15.19■□□□□ 0.02
Limch1Q3UH68 Sema4a-213ENSMUST00000165898 3125 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
Limch1Q3UH68 Pcdhgc3-201ENSMUST00000076807 4687 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Limch1Q3UH68 Senp5-201ENSMUST00000023457 3498 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Limch1Q3UH68 Eps8l3-201ENSMUST00000037375 2271 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Limch1Q3UH68 B230344G16Rik-201ENSMUST00000180782 2024 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Limch1Q3UH68 Mageb10-ps-201ENSMUST00000119697 1407 ntBASIC15.19■□□□□ 0.02
Limch1Q3UH68 Kif13a-201ENSMUST00000056978 6866 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Limch1Q3UH68 Tctn2-207ENSMUST00000185820 2733 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Limch1Q3UH68 Kcnt1-211ENSMUST00000171268 3771 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Limch1Q3UH68 Slc7a6-201ENSMUST00000034378 3750 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Limch1Q3UH68 Cdc42se1-201ENSMUST00000053872 2805 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Limch1Q3UH68 Kif1c-202ENSMUST00000094499 5168 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Limch1Q3UH68 Hoxb13-201ENSMUST00000062709 2206 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Limch1Q3UH68 Cdk11b-201ENSMUST00000067081 2595 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
Limch1Q3UH68 Birc7-201ENSMUST00000108875 1178 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
Limch1Q3UH68 Pkig-203ENSMUST00000109400 1059 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Limch1Q3UH68 Rhox2b-201ENSMUST00000115191 799 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Limch1Q3UH68 Cabp5-202ENSMUST00000117400 1258 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Limch1Q3UH68 Gm15635-202ENSMUST00000131160 917 ntTSL 3 BASIC15.19■□□□□ 0.02
Limch1Q3UH68 Ssr4-208ENSMUST00000166518 800 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Limch1Q3UH68 Gm8801-201ENSMUST00000173255 1064 ntBASIC15.19■□□□□ 0.02
Limch1Q3UH68 Neurl3-202ENSMUST00000188666 1206 ntTSL 5 BASIC15.19■□□□□ 0.02
Limch1Q3UH68 Gm19710-201ENSMUST00000200257 640 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Limch1Q3UH68 Gm44069-201ENSMUST00000204898 506 ntBASIC15.19■□□□□ 0.02
Limch1Q3UH68 Gm44064-201ENSMUST00000204964 1087 ntBASIC15.19■□□□□ 0.02
Limch1Q3UH68 Gm6013-201ENSMUST00000212264 699 ntBASIC15.19■□□□□ 0.02
Limch1Q3UH68 Gm34466-201ENSMUST00000222218 505 ntTSL 2 BASIC15.19■□□□□ 0.02
Limch1Q3UH68 Ambp-201ENSMUST00000030041 1268 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Limch1Q3UH68 Tmem86b-201ENSMUST00000055085 1222 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Limch1Q3UH68 Dnal4-202ENSMUST00000069877 1011 ntTSL 5 BASIC15.19■□□□□ 0.02
Limch1Q3UH68 Olfr54-201ENSMUST00000072152 942 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
Limch1Q3UH68 Olfr1375-201ENSMUST00000073543 942 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
Limch1Q3UH68 Pcdhgb8-202ENSMUST00000208907 2796 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Limch1Q3UH68 Hif3a-202ENSMUST00000108492 6402 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Limch1Q3UH68 Twistnb-201ENSMUST00000020877 4325 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Limch1Q3UH68 Ckm-203ENSMUST00000208710 2742 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Limch1Q3UH68 Prrc2b-201ENSMUST00000036691 8612 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
Limch1Q3UH68 Fancc-201ENSMUST00000073029 3165 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
Limch1Q3UH68 Smarca4-204ENSMUST00000174008 5405 ntAPPRIS ALT1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Limch1Q3UH68 Gm36745-201ENSMUST00000213455 1594 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Limch1Q3UH68 Rab10os-202ENSMUST00000177896 2872 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Limch1Q3UH68 Zbtb44-205ENSMUST00000216649 3157 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Limch1Q3UH68 Gtf2i-201ENSMUST00000059042 4455 ntAPPRIS P4 TSL 1 (best) BASIC15.18■□□□□ 0.02
Limch1Q3UH68 G2e3-201ENSMUST00000054308 6803 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
Limch1Q3UH68 Mlx-203ENSMUST00000107303 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Limch1Q3UH68 Arl14ep-201ENSMUST00000028536 3337 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Limch1Q3UH68 Cpsf4l-203ENSMUST00000106617 1123 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Limch1Q3UH68 Zbtb20-205ENSMUST00000114695 2977 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
Limch1Q3UH68 Cbfa2t2-ps1-201ENSMUST00000117165 730 ntBASIC15.18■□□□□ 0.02
Limch1Q3UH68 Gm16202-201ENSMUST00000117532 544 ntBASIC15.18■□□□□ 0.02
Limch1Q3UH68 Cdk4-202ENSMUST00000120226 714 ntTSL 5 BASIC15.18■□□□□ 0.02
Limch1Q3UH68 Rdh18-ps-201ENSMUST00000137395 944 ntBASIC15.18■□□□□ 0.02
Limch1Q3UH68 Rdh18-ps-202ENSMUST00000143917 953 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Limch1Q3UH68 Smad7-204ENSMUST00000174411 769 ntTSL 5 BASIC15.18■□□□□ 0.02
Limch1Q3UH68 Gm26618-201ENSMUST00000181123 497 ntTSL 2 BASIC15.18■□□□□ 0.02
Limch1Q3UH68 Dnd1-ps-201ENSMUST00000196992 964 ntBASIC15.18■□□□□ 0.02
Limch1Q3UH68 Gm42929-201ENSMUST00000198374 1286 ntBASIC15.18■□□□□ 0.02
Limch1Q3UH68 AC144543.1-201ENSMUST00000221840 1064 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Limch1Q3UH68 CU024892.2-201ENSMUST00000224608 832 ntBASIC15.18■□□□□ 0.02
Limch1Q3UH68 AC138604.1-201ENSMUST00000226969 739 ntBASIC15.18■□□□□ 0.02
Limch1Q3UH68 Krtcap2-201ENSMUST00000040888 1172 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Limch1Q3UH68 Lcn10-201ENSMUST00000058912 1106 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Limch1Q3UH68 Egr3-204ENSMUST00000225200 3940 ntAPPRIS P2 BASIC15.18■□□□□ 0.02
Limch1Q3UH68 Wfdc1-201ENSMUST00000024107 1371 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Limch1Q3UH68 C1qtnf1-202ENSMUST00000106286 2512 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Limch1Q3UH68 M6pr-202ENSMUST00000112610 2539 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
Limch1Q3UH68 C1qtnf1-201ENSMUST00000017590 2532 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Limch1Q3UH68 M6pr-201ENSMUST00000007602 2515 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Limch1Q3UH68 Atxn7l3b-201ENSMUST00000099276 3566 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
Limch1Q3UH68 Grm2-201ENSMUST00000023959 4711 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
Limch1Q3UH68 Parp2-201ENSMUST00000036126 1894 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Limch1Q3UH68 Aifm3-201ENSMUST00000023448 2688 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
Limch1Q3UH68 Flcn-202ENSMUST00000091246 2768 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Limch1Q3UH68 Ehd1-201ENSMUST00000025684 3353 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Limch1Q3UH68 Shisa3-201ENSMUST00000087241 3760 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Limch1Q3UH68 Gm15544-201ENSMUST00000118776 1531 ntBASIC15.17■□□□□ 0.02
Limch1Q3UH68 Atat1-212ENSMUST00000141662 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Limch1Q3UH68 Zfp64-203ENSMUST00000109162 2848 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
Limch1Q3UH68 Dgcr14-201ENSMUST00000003621 2819 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Limch1Q3UH68 Sh3bp4-201ENSMUST00000066279 4995 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Limch1Q3UH68 Zbtb7b-203ENSMUST00000107433 3650 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Limch1Q3UH68 Calcr-204ENSMUST00000170266 2175 ntAPPRIS P4 TSL 1 (best) BASIC15.17■□□□□ 0.02
Limch1Q3UH68 Pglyrp2-202ENSMUST00000170392 2068 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Limch1Q3UH68 Gm45253-201ENSMUST00000210694 2076 ntTSL 5 BASIC15.17■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 74.1 ms