Protein–RNA interactions for Protein: P97386

Lig3, DNA ligase 3, mousemouse

Predictions only

Length 1,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig3P97386 Top1mt-201ENSMUST00000000958 1903 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Lig3P97386 Map2k6-202ENSMUST00000100260 2088 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Lig3P97386 1500009C09Rik-202ENSMUST00000143238 1552 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Lig3P97386 Sgk3-201ENSMUST00000097826 2728 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Lig3P97386 Ace3-201ENSMUST00000190995 2214 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Lig3P97386 Ttyh1-202ENSMUST00000079415 2882 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Lig3P97386 Mau2-202ENSMUST00000168013 5323 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
Lig3P97386 Matn3-201ENSMUST00000020899 3014 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Lig3P97386 Ube2g1-201ENSMUST00000021148 3815 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Lig3P97386 Cdk5rap3-201ENSMUST00000103152 2250 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Lig3P97386 Aire-207ENSMUST00000140636 1615 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Lig3P97386 Rbfox2-202ENSMUST00000111581 3072 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Lig3P97386 Galnt6-201ENSMUST00000052069 3798 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Lig3P97386 Slc16a2-201ENSMUST00000042664 4152 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Lig3P97386 Rbm47-204ENSMUST00000113726 4703 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
Lig3P97386 Smug1-201ENSMUST00000064067 3281 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
Lig3P97386 Dhrs3-202ENSMUST00000105744 1226 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Lig3P97386 Cpsf4l-203ENSMUST00000106617 1123 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Lig3P97386 Fgf8-203ENSMUST00000111924 630 ntTSL 5 BASIC14.12□□□□□ -0.15
Lig3P97386 Gm14730-201ENSMUST00000122378 1045 ntBASIC14.12□□□□□ -0.15
Lig3P97386 Gm14966-202ENSMUST00000129675 649 ntTSL 2 BASIC14.12□□□□□ -0.15
Lig3P97386 Gm42791-202ENSMUST00000147473 727 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
Lig3P97386 2310057J18Rik-201ENSMUST00000015663 1238 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Lig3P97386 Prss51-202ENSMUST00000165710 953 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Lig3P97386 Gm27320-201ENSMUST00000184892 109 ntBASIC14.12□□□□□ -0.15
Lig3P97386 Gm7498-201ENSMUST00000203282 1084 ntBASIC14.12□□□□□ -0.15
Lig3P97386 CT033793.1-201ENSMUST00000216883 565 ntTSL 5 BASIC14.12□□□□□ -0.15
Lig3P97386 AC155637.1-201ENSMUST00000218560 636 ntBASIC14.12□□□□□ -0.15
Lig3P97386 CT030704.2-201ENSMUST00000228887 494 ntBASIC14.12□□□□□ -0.15
Lig3P97386 Bphl-201ENSMUST00000040656 1253 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Lig3P97386 Krtap19-2-201ENSMUST00000076186 605 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
Lig3P97386 Bptf-203ENSMUST00000106763 12036 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
Lig3P97386 Cacna2d1-202ENSMUST00000078272 7311 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Lig3P97386 Chp1-201ENSMUST00000014221 2609 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Lig3P97386 Capn3-203ENSMUST00000090028 2640 ntTSL 5 BASIC14.12□□□□□ -0.15
Lig3P97386 4930513N10Rik-204ENSMUST00000212647 3957 ntBASIC14.12□□□□□ -0.15
Lig3P97386 Tlk2-209ENSMUST00000145048 2776 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Lig3P97386 Ebf3-203ENSMUST00000168203 3724 ntAPPRIS ALT1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Lig3P97386 Zfp977-201ENSMUST00000173283 1425 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
Lig3P97386 Pou4f3-201ENSMUST00000025374 2360 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Lig3P97386 Npepps-219ENSMUST00000172108 2924 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
Lig3P97386 Trip4-201ENSMUST00000117083 1999 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Lig3P97386 Pnkd-203ENSMUST00000087226 3054 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Lig3P97386 AC114543.1-201ENSMUST00000226451 1558 ntBASIC14.12□□□□□ -0.15
Lig3P97386 9230110C19Rik-201ENSMUST00000065291 1592 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Lig3P97386 Dda1-206ENSMUST00000138892 1738 ntTSL 3 BASIC14.12□□□□□ -0.15
Lig3P97386 Gfod2-201ENSMUST00000013294 4352 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Lig3P97386 Gm26616-202ENSMUST00000195676 3107 ntBASIC14.12□□□□□ -0.15
Lig3P97386 Bicd1-202ENSMUST00000086829 9667 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Lig3P97386 Ccdc134-201ENSMUST00000089174 2043 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Lig3P97386 Tmem181b-ps-203ENSMUST00000188746 1626 ntTSL 5 BASIC14.12□□□□□ -0.15
Lig3P97386 Patj-201ENSMUST00000030290 2495 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Lig3P97386 Supt6-201ENSMUST00000002121 6488 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Lig3P97386 Kyat1-204ENSMUST00000113661 2057 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Lig3P97386 Abhd6-202ENSMUST00000166497 2226 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Lig3P97386 Coasy-202ENSMUST00000107308 2386 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Lig3P97386 Cyp2t4-202ENSMUST00000164093 1512 ntAPPRIS P2 TSL 5 BASIC14.11□□□□□ -0.15
Lig3P97386 Slc35b1-201ENSMUST00000021243 1523 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Lig3P97386 E2f3-201ENSMUST00000102948 5097 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Lig3P97386 Gm28373-201ENSMUST00000178129 2724 ntTSL 2 BASIC14.11□□□□□ -0.15
Lig3P97386 Pias3-202ENSMUST00000107076 2858 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Lig3P97386 Dab2ip-205ENSMUST00000112986 5580 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
Lig3P97386 Rxrg-204ENSMUST00000111386 1705 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
Lig3P97386 Rasgrp2-207ENSMUST00000113475 573 ntTSL 5 BASIC14.11□□□□□ -0.15
Lig3P97386 1700012C08Rik-201ENSMUST00000141554 363 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Lig3P97386 Glo1-202ENSMUST00000167624 895 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
Lig3P97386 A930009A15Rik-201ENSMUST00000173620 1001 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Lig3P97386 Anapc16-202ENSMUST00000182116 581 ntTSL 3 BASIC14.11□□□□□ -0.15
Lig3P97386 Gm2445-201ENSMUST00000182798 989 ntBASIC14.11□□□□□ -0.15
Lig3P97386 Neurl3-202ENSMUST00000188666 1206 ntTSL 5 BASIC14.11□□□□□ -0.15
Lig3P97386 Hars2-201ENSMUST00000019287 2002 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Lig3P97386 Ighv1-51-201ENSMUST00000192903 354 ntBASIC14.11□□□□□ -0.15
Lig3P97386 Gm7118-201ENSMUST00000200167 1003 ntBASIC14.11□□□□□ -0.15
Lig3P97386 Atp6v0c-ps1-201ENSMUST00000206596 463 ntBASIC14.11□□□□□ -0.15
Lig3P97386 Gm45720-201ENSMUST00000211881 484 ntTSL 3 BASIC14.11□□□□□ -0.15
Lig3P97386 Scoc-203ENSMUST00000212031 409 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
Lig3P97386 AL732309.2-201ENSMUST00000228052 3210 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
Lig3P97386 1700018B08Rik-201ENSMUST00000034265 1084 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Lig3P97386 Ier3-201ENSMUST00000003635 1131 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Lig3P97386 Il27-201ENSMUST00000058429 1021 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Lig3P97386 Slc34a3-201ENSMUST00000006638 2183 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Lig3P97386 Gm6169-201ENSMUST00000071118 1030 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
Lig3P97386 Snora73a-201ENSMUST00000082453 205 ntBASIC14.11□□□□□ -0.15
Lig3P97386 Ncor2-204ENSMUST00000111394 7452 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Lig3P97386 Eya1-201ENSMUST00000027066 4347 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
Lig3P97386 4933434M16Rik-202ENSMUST00000153429 1940 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Lig3P97386 Gtf2a1l-201ENSMUST00000024970 1621 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Lig3P97386 Gm5779-202ENSMUST00000219564 1477 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Lig3P97386 Syce1-201ENSMUST00000026553 1460 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Lig3P97386 Actn4-211ENSMUST00000217157 3530 ntTSL 5 BASIC14.11□□□□□ -0.15
Lig3P97386 Thap1-201ENSMUST00000036807 2295 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Lig3P97386 Gne-209ENSMUST00000173234 2149 ntTSL 5 BASIC14.11□□□□□ -0.15
Lig3P97386 Mpv17l-201ENSMUST00000023360 3087 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Lig3P97386 Tmtc3-202ENSMUST00000099318 2794 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
Lig3P97386 Necab1-201ENSMUST00000041606 4922 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Lig3P97386 Cldn34c1-201ENSMUST00000113343 3301 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Lig3P97386 Itgal-201ENSMUST00000106306 5195 ntAPPRIS P4 TSL 1 (best) BASIC14.1□□□□□ -0.15
Lig3P97386 Sema4a-202ENSMUST00000107531 2897 ntTSL 5 BASIC14.1□□□□□ -0.15
Lig3P97386 Wnt7b-201ENSMUST00000023015 3371 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
Lig3P97386 Trp53i11-202ENSMUST00000111266 2703 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 37.9 ms