Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Tpd52l1-205ENSMUST00000215515 857 ntTSL 2 BASIC13.64□□□□□ -0.23
Shmt1P50431 Med27-201ENSMUST00000028139 1254 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Shmt1P50431 Bcdin3d-201ENSMUST00000040313 1271 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Shmt1P50431 Gart-201ENSMUST00000023684 3518 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Shmt1P50431 St13-205ENSMUST00000172107 3346 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Shmt1P50431 Cul5-209ENSMUST00000166367 5942 ntTSL 5 BASIC13.64□□□□□ -0.23
Shmt1P50431 Samd11-202ENSMUST00000217934 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Shmt1P50431 Plekha5-212ENSMUST00000204876 1928 ntTSL 5 BASIC13.64□□□□□ -0.23
Shmt1P50431 Gm1661-203ENSMUST00000165128 1837 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
Shmt1P50431 Olfr56-204ENSMUST00000203149 1808 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Shmt1P50431 AC151895.1-201ENSMUST00000219025 1742 ntBASIC13.64□□□□□ -0.23
Shmt1P50431 Naaladl1-201ENSMUST00000044451 2491 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
Shmt1P50431 Olfr157-202ENSMUST00000215442 1766 ntAPPRIS P1 BASIC13.63□□□□□ -0.23
Shmt1P50431 Yipf6-201ENSMUST00000054697 5211 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Shmt1P50431 Pcgf5-211ENSMUST00000225920 6443 ntBASIC13.63□□□□□ -0.23
Shmt1P50431 Inpp5a-202ENSMUST00000097975 2301 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Shmt1P50431 Ebna1bp2-201ENSMUST00000030501 2960 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Shmt1P50431 Gm5385-201ENSMUST00000118988 1559 ntBASIC13.63□□□□□ -0.23
Shmt1P50431 Gemin2-201ENSMUST00000021379 1588 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Shmt1P50431 Atp2a3-204ENSMUST00000108486 4540 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
Shmt1P50431 Lat2-205ENSMUST00000200998 1481 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Shmt1P50431 Gpr18-201ENSMUST00000055475 1498 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Shmt1P50431 Dido1-207ENSMUST00000130986 4898 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Shmt1P50431 Tnpo2-201ENSMUST00000093360 4863 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Shmt1P50431 Plekhb1-204ENSMUST00000107045 1919 ntAPPRIS ALT1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Shmt1P50431 Stx18-203ENSMUST00000114126 3002 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Shmt1P50431 Rabggtb-201ENSMUST00000089950 1381 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
Shmt1P50431 Setdb1-203ENSMUST00000107171 4573 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Shmt1P50431 Ercc5-201ENSMUST00000027214 3907 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Shmt1P50431 Gm14723-201ENSMUST00000118686 215 ntBASIC13.63□□□□□ -0.23
Shmt1P50431 Fzr1-202ENSMUST00000118812 1215 ntTSL 5 BASIC13.63□□□□□ -0.23
Shmt1P50431 Gm12502-201ENSMUST00000120197 444 ntBASIC13.63□□□□□ -0.23
Shmt1P50431 Adamtsl1-204ENSMUST00000120678 977 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Shmt1P50431 Gm15351-201ENSMUST00000123920 419 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Shmt1P50431 Gm42420-201ENSMUST00000126621 634 ntAPPRIS P1 TSL 3 BASIC13.63□□□□□ -0.23
Shmt1P50431 Gm12050-201ENSMUST00000127483 615 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Shmt1P50431 Hoxb5os-202ENSMUST00000150698 596 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Shmt1P50431 Mir8109-201ENSMUST00000184375 117 ntBASIC13.63□□□□□ -0.23
Shmt1P50431 Gm38092-201ENSMUST00000195600 653 ntBASIC13.63□□□□□ -0.23
Shmt1P50431 Sox2ot-205ENSMUST00000196795 754 ntTSL 3 BASIC13.63□□□□□ -0.23
Shmt1P50431 Gm8099-201ENSMUST00000200510 742 ntBASIC13.63□□□□□ -0.23
Shmt1P50431 Gm45720-201ENSMUST00000211881 484 ntTSL 3 BASIC13.63□□□□□ -0.23
Shmt1P50431 Gm7172-201ENSMUST00000218047 1152 ntBASIC13.63□□□□□ -0.23
Shmt1P50431 Ormdl2-204ENSMUST00000219524 724 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
Shmt1P50431 AC139319.1-201ENSMUST00000223331 690 ntTSL 5 BASIC13.63□□□□□ -0.23
Shmt1P50431 4921530L21Rik-202ENSMUST00000228913 1115 ntAPPRIS P1 BASIC13.63□□□□□ -0.23
Shmt1P50431 Krtap4-7-201ENSMUST00000055121 984 ntAPPRIS P1 BASIC13.63□□□□□ -0.23
Shmt1P50431 Gm17383-201ENSMUST00000078739 1041 ntBASIC13.63□□□□□ -0.23
Shmt1P50431 Mir339-201ENSMUST00000083659 96 ntBASIC13.63□□□□□ -0.23
Shmt1P50431 Gm37644-201ENSMUST00000192190 2270 ntBASIC13.63□□□□□ -0.23
Shmt1P50431 Slc25a25-204ENSMUST00000113308 2643 ntTSL 5 BASIC13.63□□□□□ -0.23
Shmt1P50431 Fam20a-201ENSMUST00000020938 2541 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Shmt1P50431 Ap2a1-201ENSMUST00000085399 3442 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
Shmt1P50431 Acap2-201ENSMUST00000058033 6493 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Shmt1P50431 Zc3h13-201ENSMUST00000022577 6151 ntAPPRIS P2 TSL 5 BASIC13.63□□□□□ -0.23
Shmt1P50431 9330162012Rik-201ENSMUST00000154919 3836 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Shmt1P50431 Inhba-201ENSMUST00000042603 6390 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Shmt1P50431 Dlx5-202ENSMUST00000142635 1324 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Shmt1P50431 Fgfr3-215ENSMUST00000202138 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Shmt1P50431 Gm6203-201ENSMUST00000209575 1342 ntBASIC13.63□□□□□ -0.23
Shmt1P50431 Ddx23-201ENSMUST00000003450 3187 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
Shmt1P50431 Olfr56-201ENSMUST00000056759 1925 ntTSL 5 BASIC13.62□□□□□ -0.23
Shmt1P50431 Il12rb1-201ENSMUST00000000808 2873 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Shmt1P50431 Gm8228-201ENSMUST00000189949 2192 ntBASIC13.62□□□□□ -0.23
Shmt1P50431 Otx2-209ENSMUST00000226501 2592 ntAPPRIS P1 BASIC13.62□□□□□ -0.23
Shmt1P50431 Cd247-201ENSMUST00000005907 1632 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Shmt1P50431 Tex9-206ENSMUST00000183574 1264 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Shmt1P50431 Gm27501-201ENSMUST00000183599 107 ntBASIC13.62□□□□□ -0.23
Shmt1P50431 2010310C07Rik-202ENSMUST00000190889 842 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Shmt1P50431 Gm18916-201ENSMUST00000198264 1246 ntBASIC13.62□□□□□ -0.23
Shmt1P50431 Gm44702-201ENSMUST00000209194 592 ntTSL 3 BASIC13.62□□□□□ -0.23
Shmt1P50431 Gm45338-203ENSMUST00000210371 1009 ntTSL 5 BASIC13.62□□□□□ -0.23
Shmt1P50431 Oxr1-204ENSMUST00000110297 4596 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Shmt1P50431 Wiz-201ENSMUST00000064694 2871 ntAPPRIS P4 TSL 1 (best) BASIC13.62□□□□□ -0.23
Shmt1P50431 Ildr1-202ENSMUST00000089618 2850 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Shmt1P50431 Gns-201ENSMUST00000040344 3855 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Shmt1P50431 Sox11-201ENSMUST00000079063 8311 ntAPPRIS P1 BASIC13.62□□□□□ -0.23
Shmt1P50431 Khdrbs2-205ENSMUST00000189878 3259 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Shmt1P50431 Fam49b-201ENSMUST00000063838 3797 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Shmt1P50431 Vmn1r65-201ENSMUST00000086338 2682 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Shmt1P50431 Rab15-201ENSMUST00000021459 3158 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Shmt1P50431 Aldh9a1-201ENSMUST00000028004 2835 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Shmt1P50431 Gm14703-201ENSMUST00000145894 1820 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Shmt1P50431 Zfp740-201ENSMUST00000118729 4241 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Shmt1P50431 Slc6a8-201ENSMUST00000033752 3964 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Shmt1P50431 Sacs-202ENSMUST00000119509 3468 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
Shmt1P50431 Dcaf6-201ENSMUST00000027856 4110 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Shmt1P50431 Gatad2a-206ENSMUST00000212478 3622 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
Shmt1P50431 Scara5-201ENSMUST00000022610 3794 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Shmt1P50431 Zbtb49-202ENSMUST00000114113 2645 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Shmt1P50431 Gm43364-201ENSMUST00000196046 3274 ntBASIC13.61□□□□□ -0.23
Shmt1P50431 Ext1-201ENSMUST00000077273 7663 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Shmt1P50431 Hectd2-208ENSMUST00000169036 3842 ntAPPRIS ALT1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Shmt1P50431 Sec62-201ENSMUST00000029256 3967 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Shmt1P50431 Wsb2-202ENSMUST00000111959 1526 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Shmt1P50431 Tekt4-201ENSMUST00000025002 1532 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Shmt1P50431 E130114P18Rik-202ENSMUST00000107068 1132 ntAPPRIS P5 TSL 3 BASIC13.61□□□□□ -0.23
Shmt1P50431 Tmem219-203ENSMUST00000120007 1087 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Shmt1P50431 Nr2f1-203ENSMUST00000127137 991 ntTSL 5 BASIC13.61□□□□□ -0.23
Shmt1P50431 Gm13850-201ENSMUST00000140465 623 ntTSL 3 BASIC13.61□□□□□ -0.23
Retrieved 100 of 76,532 protein–RNA pairs in 28.7 ms