Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Mtus2-203ENSMUST00000085558 7543 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Lire1P11260 A930024N18Rik-201ENSMUST00000181251 3955 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Lire1P11260 Stau2-215ENSMUST00000162435 2735 ntTSL 5 BASIC12.3□□□□□ -0.44
Lire1P11260 Map3k8-201ENSMUST00000025078 2507 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Lire1P11260 AC154527.2-201ENSMUST00000225256 1466 ntBASIC12.3□□□□□ -0.44
Lire1P11260 Mir692-1-201ENSMUST00000102263 109 ntBASIC12.3□□□□□ -0.44
Lire1P11260 Brsk2-204ENSMUST00000105989 2149 ntAPPRIS P4 TSL 5 BASIC12.3□□□□□ -0.44
Lire1P11260 Mir1894-201ENSMUST00000122802 81 ntBASIC12.3□□□□□ -0.44
Lire1P11260 2210408F21Rik-214ENSMUST00000155345 1022 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Lire1P11260 Ndufaf2-201ENSMUST00000163558 678 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Lire1P11260 1700037F24Rik-201ENSMUST00000181254 973 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Lire1P11260 Gm11214-201ENSMUST00000184252 552 ntAPPRIS P1 BASIC12.3□□□□□ -0.44
Lire1P11260 2810429I04Rik-210ENSMUST00000189464 868 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Lire1P11260 Rpl18-208ENSMUST00000211061 552 ntTSL 5 BASIC12.3□□□□□ -0.44
Lire1P11260 Gm8225-201ENSMUST00000090257 879 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Lire1P11260 Pef1-202ENSMUST00000118199 1915 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
Lire1P11260 Atxn2l-201ENSMUST00000040202 3853 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
Lire1P11260 Alkbh4-202ENSMUST00000100568 1714 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
Lire1P11260 Ccdc22-201ENSMUST00000033483 2353 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Lire1P11260 Pnck-201ENSMUST00000002087 1536 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Lire1P11260 Fn1-216ENSMUST00000189821 7410 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Lire1P11260 Stx3-203ENSMUST00000075304 2430 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Lire1P11260 Tmem86b-202ENSMUST00000205360 1344 ntTSL 2 BASIC12.3□□□□□ -0.44
Lire1P11260 Med4-201ENSMUST00000022705 1328 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Lire1P11260 Dnm1-202ENSMUST00000091089 3764 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Lire1P11260 Tmub2-205ENSMUST00000156326 2249 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Lire1P11260 Nphs2-201ENSMUST00000027896 3116 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Lire1P11260 Pdlim2-210ENSMUST00000153735 1578 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
Lire1P11260 Gm9195-201ENSMUST00000208955 8870 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
Lire1P11260 Gm9200-201ENSMUST00000118513 1354 ntBASIC12.3□□□□□ -0.44
Lire1P11260 CK137956-201ENSMUST00000030614 2319 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Lire1P11260 Kif1a-210ENSMUST00000190723 6141 ntTSL 5 BASIC12.29□□□□□ -0.44
Lire1P11260 Gm45706-201ENSMUST00000213063 2136 ntBASIC12.29□□□□□ -0.44
Lire1P11260 Morn1-201ENSMUST00000030915 1659 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Lire1P11260 Sfxn3-203ENSMUST00000111954 2867 ntTSL 5 BASIC12.29□□□□□ -0.44
Lire1P11260 Sh3bp2-201ENSMUST00000067638 2885 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
Lire1P11260 Prnd-203ENSMUST00000110171 1938 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Lire1P11260 Ago1-201ENSMUST00000097888 7227 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Lire1P11260 Wnt7b-201ENSMUST00000023015 3371 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
Lire1P11260 Rap1gds1-202ENSMUST00000098574 3669 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
Lire1P11260 Ascc1-201ENSMUST00000050516 1450 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Lire1P11260 4930534D22Rik-201ENSMUST00000181438 2715 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Lire1P11260 Ero1lb-201ENSMUST00000071973 4239 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Lire1P11260 Mettl3-201ENSMUST00000022767 2025 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Lire1P11260 Acsl6-210ENSMUST00000108905 5807 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Lire1P11260 Egfem1-201ENSMUST00000118531 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Lire1P11260 Ckmt1-202ENSMUST00000078222 1518 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Lire1P11260 Rpl36al-203ENSMUST00000110620 757 ntAPPRIS P1 TSL 2 BASIC12.29□□□□□ -0.44
Lire1P11260 Slc2a9-207ENSMUST00000143758 1296 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Lire1P11260 Mir1982-201ENSMUST00000157368 74 ntBASIC12.29□□□□□ -0.44
Lire1P11260 Gm15853-201ENSMUST00000160268 556 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Lire1P11260 Gm17409-201ENSMUST00000167423 962 ntAPPRIS P1 BASIC12.29□□□□□ -0.44
Lire1P11260 Arf5-202ENSMUST00000169841 768 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
Lire1P11260 Rnf2-203ENSMUST00000186415 1106 ntTSL 5 BASIC12.29□□□□□ -0.44
Lire1P11260 Gm44608-201ENSMUST00000206827 855 ntBASIC12.29□□□□□ -0.44
Lire1P11260 Gm44799-201ENSMUST00000207639 1202 ntBASIC12.29□□□□□ -0.44
Lire1P11260 Ntsr1-202ENSMUST00000170448 2594 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Lire1P11260 Ticam2-201ENSMUST00000070084 2340 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Lire1P11260 Rit2-203ENSMUST00000153060 1806 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Lire1P11260 Hck-204ENSMUST00000191431 1575 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
Lire1P11260 Chst4-202ENSMUST00000211894 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Lire1P11260 Anxa7-202ENSMUST00000100844 2904 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Lire1P11260 C1qtnf6-201ENSMUST00000023075 2402 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Lire1P11260 Grm4-202ENSMUST00000118489 2976 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Lire1P11260 Smtn-202ENSMUST00000020721 3335 ntAPPRIS P2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Lire1P11260 Rbm10-207ENSMUST00000177738 2790 ntAPPRIS ALT2 TSL 5 BASIC12.29□□□□□ -0.44
Lire1P11260 Rbm10-201ENSMUST00000064911 2793 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
Lire1P11260 Dct-201ENSMUST00000022725 2202 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Lire1P11260 Wwox-201ENSMUST00000004756 2244 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Lire1P11260 Heatr3-202ENSMUST00000121949 3086 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Lire1P11260 Ptbp2-201ENSMUST00000029780 3364 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
Lire1P11260 Pfkfb3-205ENSMUST00000114845 1971 ntTSL 5 BASIC12.29□□□□□ -0.44
Lire1P11260 Sncaip-209ENSMUST00000179625 2568 ntTSL 5 BASIC12.28□□□□□ -0.44
Lire1P11260 Nono-201ENSMUST00000033673 2562 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Lire1P11260 Evi5l-208ENSMUST00000176825 3728 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
Lire1P11260 Srrm1-202ENSMUST00000084846 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Lire1P11260 BC003331-203ENSMUST00000097546 3174 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
Lire1P11260 Tbc1d14-210ENSMUST00000140607 4649 ntAPPRIS P3 TSL 5 BASIC12.28□□□□□ -0.44
Lire1P11260 Wls-205ENSMUST00000198878 2050 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Lire1P11260 Ccdc126-202ENSMUST00000114491 2372 ntTSL 5 BASIC12.28□□□□□ -0.44
Lire1P11260 Psap-201ENSMUST00000004316 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Lire1P11260 Vps52-201ENSMUST00000025178 3332 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Lire1P11260 Ildr1-201ENSMUST00000023617 3042 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Lire1P11260 Runx1t1-204ENSMUST00000105566 6090 ntAPPRIS ALT1 TSL 5 BASIC12.28□□□□□ -0.44
Lire1P11260 Vezf1-201ENSMUST00000018521 4583 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Lire1P11260 Per2-201ENSMUST00000069620 5833 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Lire1P11260 Cerk-203ENSMUST00000156546 2162 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Lire1P11260 Igsf23-204ENSMUST00000208974 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Lire1P11260 Wfs1-201ENSMUST00000043964 3787 ntAPPRIS P2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Lire1P11260 0610010F05Rik-208ENSMUST00000180260 4128 ntAPPRIS P2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Lire1P11260 Uqcrq-203ENSMUST00000109021 405 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Lire1P11260 Gm12742-201ENSMUST00000117326 410 ntBASIC12.28□□□□□ -0.44
Lire1P11260 Cenpa-206ENSMUST00000149759 346 ntTSL 3 BASIC12.28□□□□□ -0.44
Lire1P11260 Tac2-202ENSMUST00000179960 852 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Lire1P11260 Gm17795-201ENSMUST00000214505 757 ntBASIC12.28□□□□□ -0.44
Lire1P11260 AC125117.1-201ENSMUST00000228121 468 ntBASIC12.28□□□□□ -0.44
Lire1P11260 Prss41-201ENSMUST00000024926 1128 ntAPPRIS P2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Lire1P11260 Tac2-201ENSMUST00000026466 678 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Lire1P11260 Oxt-201ENSMUST00000028764 537 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Lire1P11260 1700016D06Rik-201ENSMUST00000033906 1263 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Retrieved 100 of 76,532 protein–RNA pairs in 40.5 ms