Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Gm24231-201ENSMUST00000104315 133 ntBASIC15.22■□□□□ 0.03
Col3a1P08121 Gm23200-201ENSMUST00000104379 132 ntBASIC15.22■□□□□ 0.03
Col3a1P08121 Pom121l12-201ENSMUST00000117584 1039 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
Col3a1P08121 Hmgcll1-202ENSMUST00000117981 1189 ntTSL 5 BASIC15.22■□□□□ 0.03
Col3a1P08121 Gm14760-201ENSMUST00000121831 999 ntBASIC15.22■□□□□ 0.03
Col3a1P08121 Pdxk-ps-202ENSMUST00000160550 876 ntBASIC15.22■□□□□ 0.03
Col3a1P08121 Rps28-202ENSMUST00000166693 271 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
Col3a1P08121 Arf4os-201ENSMUST00000166902 566 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Col3a1P08121 Gm44651-201ENSMUST00000207343 372 ntBASIC15.22■□□□□ 0.03
Col3a1P08121 Gm3898-202ENSMUST00000216905 328 ntTSL 2 BASIC15.22■□□□□ 0.03
Col3a1P08121 Pglyrp1-201ENSMUST00000032573 694 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col3a1P08121 Prorsd1-201ENSMUST00000039900 918 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col3a1P08121 Olfr398-201ENSMUST00000053874 945 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
Col3a1P08121 Rpl10a-ps2-201ENSMUST00000071184 642 ntBASIC15.22■□□□□ 0.03
Col3a1P08121 Taar7e-201ENSMUST00000092656 1077 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
Col3a1P08121 Mapk8ip2-201ENSMUST00000023291 5558 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col3a1P08121 Plekhg6-201ENSMUST00000042647 3299 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col3a1P08121 Pcdhgb8-202ENSMUST00000208907 2796 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col3a1P08121 Ttc33-203ENSMUST00000118193 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col3a1P08121 Lrrc30-201ENSMUST00000097290 1759 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
Col3a1P08121 Syk-203ENSMUST00000120135 5363 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col3a1P08121 Txndc11-202ENSMUST00000118362 4248 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Col3a1P08121 BC006965-201ENSMUST00000124028 1952 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Col3a1P08121 Serp1-201ENSMUST00000029385 4611 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col3a1P08121 Glud1-201ENSMUST00000022322 3390 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col3a1P08121 Lctl-201ENSMUST00000034969 2171 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col3a1P08121 Endov-203ENSMUST00000106245 5126 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Col3a1P08121 D6Ertd527e-203ENSMUST00000203747 2216 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
Col3a1P08121 Fgfr3-203ENSMUST00000114411 4225 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
Col3a1P08121 Pxn-202ENSMUST00000086523 2667 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
Col3a1P08121 D230025D16Rik-201ENSMUST00000034361 2916 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col3a1P08121 Gabpb1-202ENSMUST00000089745 3254 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Col3a1P08121 Ptbp2-201ENSMUST00000029780 3364 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col3a1P08121 Hlf-201ENSMUST00000004051 5642 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col3a1P08121 Pax5-204ENSMUST00000107826 1228 ntTSL 5 BASIC15.21■□□□□ 0.03
Col3a1P08121 Gm14064-201ENSMUST00000134833 727 ntTSL 3 BASIC15.21■□□□□ 0.03
Col3a1P08121 Gm454-201ENSMUST00000160126 751 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Col3a1P08121 Sema6b-202ENSMUST00000167545 3847 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col3a1P08121 Gm5070-201ENSMUST00000177599 862 ntBASIC15.21■□□□□ 0.03
Col3a1P08121 Pmvk-203ENSMUST00000184515 1156 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Col3a1P08121 Gm18304-201ENSMUST00000189162 546 ntBASIC15.21■□□□□ 0.03
Col3a1P08121 Gm29787-201ENSMUST00000222129 849 ntBASIC15.21■□□□□ 0.03
Col3a1P08121 Gm12132-201ENSMUST00000130945 1391 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Col3a1P08121 Ikzf1-201ENSMUST00000018798 1542 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Col3a1P08121 Ttc23l-201ENSMUST00000022857 1931 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col3a1P08121 Dolpp1-202ENSMUST00000113612 1958 ntTSL 3 BASIC15.21■□□□□ 0.03
Col3a1P08121 Gm26685-201ENSMUST00000181831 2023 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Col3a1P08121 Gprc5a-201ENSMUST00000050104 2083 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col3a1P08121 Gm26519-201ENSMUST00000181193 2249 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Col3a1P08121 Dpysl4-202ENSMUST00000121184 2727 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Col3a1P08121 Speg-205ENSMUST00000113590 3393 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Col3a1P08121 Il1rapl2-202ENSMUST00000113063 3437 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col3a1P08121 Zfp618-202ENSMUST00000064814 2868 ntAPPRIS P2 TSL 5 BASIC15.21■□□□□ 0.02
Col3a1P08121 Fancc-202ENSMUST00000099444 2288 ntTSL 5 BASIC15.21■□□□□ 0.02
Col3a1P08121 Ssr1-203ENSMUST00000225246 1825 ntBASIC15.21■□□□□ 0.02
Col3a1P08121 Olfm2-201ENSMUST00000034692 1836 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.02
Col3a1P08121 Fnbp1-202ENSMUST00000075326 1761 ntTSL 5 BASIC15.21■□□□□ 0.02
Col3a1P08121 H2-T10-202ENSMUST00000174382 1699 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
Col3a1P08121 Gm11596-201ENSMUST00000105058 1079 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
Col3a1P08121 Gm24749-201ENSMUST00000157838 343 ntBASIC15.2■□□□□ 0.02
Col3a1P08121 Mir5120-201ENSMUST00000175020 78 ntBASIC15.2■□□□□ 0.02
Col3a1P08121 1700125G22Rik-201ENSMUST00000181124 861 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Col3a1P08121 Phgdh-ps1-201ENSMUST00000207540 754 ntBASIC15.2■□□□□ 0.02
Col3a1P08121 Phpt1-201ENSMUST00000039156 937 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col3a1P08121 Asb18-202ENSMUST00000097656 788 ntTSL 5 BASIC15.2■□□□□ 0.02
Col3a1P08121 B430305J03Rik-201ENSMUST00000066298 3702 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
Col3a1P08121 Nfkb1-206ENSMUST00000164430 3007 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col3a1P08121 Miga1-202ENSMUST00000073089 4965 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col3a1P08121 Cacna1b-204ENSMUST00000102939 9736 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
Col3a1P08121 Fam20a-201ENSMUST00000020938 2541 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col3a1P08121 Adal-205ENSMUST00000119031 2477 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
Col3a1P08121 Luc7l2-207ENSMUST00000161227 2405 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Col3a1P08121 Gins2-201ENSMUST00000034278 3900 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col3a1P08121 Capn9-201ENSMUST00000093033 2330 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col3a1P08121 Fcrls-201ENSMUST00000090986 2273 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col3a1P08121 Inpp4a-209ENSMUST00000140264 3676 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Col3a1P08121 Rgs20-202ENSMUST00000118000 2125 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
Col3a1P08121 Fuca2-201ENSMUST00000060212 2007 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col3a1P08121 Srr-202ENSMUST00000108447 3138 ntTSL 5 BASIC15.2■□□□□ 0.02
Col3a1P08121 Gcom1-201ENSMUST00000163998 1726 ntAPPRIS P5 TSL 5 BASIC15.2■□□□□ 0.02
Col3a1P08121 Slc7a6-201ENSMUST00000034378 3750 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col3a1P08121 Crcp-201ENSMUST00000026608 1492 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col3a1P08121 Megf11-210ENSMUST00000164113 6018 ntTSL 5 BASIC15.2■□□□□ 0.02
Col3a1P08121 Gm42840-201ENSMUST00000200303 2251 ntBASIC15.2■□□□□ 0.02
Col3a1P08121 Nmb-202ENSMUST00000119428 678 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
Col3a1P08121 B9d1os-201ENSMUST00000137010 674 ntBASIC15.2■□□□□ 0.02
Col3a1P08121 Gm13832-202ENSMUST00000151159 370 ntTSL 3 BASIC15.2■□□□□ 0.02
Col3a1P08121 4930539M17Rik-201ENSMUST00000194792 846 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Col3a1P08121 Gm7003-201ENSMUST00000195089 312 ntBASIC15.2■□□□□ 0.02
Col3a1P08121 Gm38094-201ENSMUST00000195864 2978 ntBASIC15.2■□□□□ 0.02
Col3a1P08121 4930589O11Rik-201ENSMUST00000200768 920 ntBASIC15.2■□□□□ 0.02
Col3a1P08121 Prr13-201ENSMUST00000023810 1224 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col3a1P08121 Atp6v1g1-201ENSMUST00000035301 1135 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col3a1P08121 U2af1l4-201ENSMUST00000043273 884 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col3a1P08121 Gm8385-201ENSMUST00000058999 643 ntBASIC15.2■□□□□ 0.02
Col3a1P08121 Gm17080-201ENSMUST00000087588 811 ntTSL 5 BASIC15.2■□□□□ 0.02
Col3a1P08121 Mybphl-201ENSMUST00000090563 1276 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col3a1P08121 Cd37-202ENSMUST00000098461 1227 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col3a1P08121 Hk3-208ENSMUST00000153665 2945 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Col3a1P08121 Slc6a20a-201ENSMUST00000040960 2732 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 58.7 ms