Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Cyp2a4-201ENSMUST00000098657 1738 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Hmgb3O54879 Arl11-201ENSMUST00000055159 1482 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Hmgb3O54879 Sqle-202ENSMUST00000100640 2636 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
Hmgb3O54879 Lmntd1-201ENSMUST00000111706 2350 ntAPPRIS ALT2 TSL 1 (best) BASIC10.66□□□□□ -0.7
Hmgb3O54879 Zkscan3-207ENSMUST00000223831 2101 ntBASIC10.66□□□□□ -0.7
Hmgb3O54879 Plekhd1-201ENSMUST00000140770 3535 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Hmgb3O54879 Fen1-201ENSMUST00000025651 2341 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Hmgb3O54879 Gabpb1-206ENSMUST00000110425 4153 ntAPPRIS ALT1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Hmgb3O54879 Mon1b-202ENSMUST00000179926 3470 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Hmgb3O54879 Tnik-201ENSMUST00000159236 12276 ntAPPRIS ALT2 TSL 1 (best) BASIC10.65□□□□□ -0.7
Hmgb3O54879 Tmem116-203ENSMUST00000094357 1366 ntAPPRIS ALT2 TSL 5 BASIC10.65□□□□□ -0.7
Hmgb3O54879 Eya1-202ENSMUST00000080664 3426 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
Hmgb3O54879 Il11ra1-202ENSMUST00000108040 1837 ntAPPRIS P1 TSL 5 BASIC10.65□□□□□ -0.7
Hmgb3O54879 Cpn1-201ENSMUST00000026210 1828 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Hmgb3O54879 Tom1-202ENSMUST00000165630 2267 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Hmgb3O54879 Thap1-201ENSMUST00000036807 2295 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Hmgb3O54879 Trim29-201ENSMUST00000034511 2735 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Hmgb3O54879 Nupl1-206ENSMUST00000225111 2936 ntBASIC10.65□□□□□ -0.7
Hmgb3O54879 Egr1-202ENSMUST00000165033 3036 ntAPPRIS P1 TSL 5 BASIC10.65□□□□□ -0.7
Hmgb3O54879 Cyp27b1-201ENSMUST00000165764 2380 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Hmgb3O54879 Cyb5rl-201ENSMUST00000030364 2360 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
Hmgb3O54879 Plcb2-206ENSMUST00000159756 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC10.65□□□□□ -0.7
Hmgb3O54879 Gm5566-201ENSMUST00000116118 459 ntBASIC10.65□□□□□ -0.7
Hmgb3O54879 Gm11508-201ENSMUST00000129337 440 ntTSL 2 BASIC10.65□□□□□ -0.7
Hmgb3O54879 Gm11201-201ENSMUST00000143473 701 ntTSL 3 BASIC10.65□□□□□ -0.7
Hmgb3O54879 Gm9824-201ENSMUST00000178707 561 ntBASIC10.65□□□□□ -0.7
Hmgb3O54879 Gm18766-201ENSMUST00000189811 808 ntBASIC10.65□□□□□ -0.7
Hmgb3O54879 Csrnp1-204ENSMUST00000215916 2956 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Hmgb3O54879 AC154806.6-201ENSMUST00000228192 202 ntBASIC10.65□□□□□ -0.7
Hmgb3O54879 Clps-201ENSMUST00000025062 550 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Hmgb3O54879 Lce1g-201ENSMUST00000029527 925 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Hmgb3O54879 Timm10b-201ENSMUST00000058333 694 ntAPPRIS P2 TSL 1 (best) BASIC10.65□□□□□ -0.7
Hmgb3O54879 Zbtb49-201ENSMUST00000094833 2978 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Hmgb3O54879 Tmem139-201ENSMUST00000095987 1147 ntAPPRIS P1 TSL 2 BASIC10.65□□□□□ -0.7
Hmgb3O54879 Lipe-208ENSMUST00000206861 3171 ntAPPRIS ALT2 TSL 1 (best) BASIC10.65□□□□□ -0.7
Hmgb3O54879 Gm29052-201ENSMUST00000187700 1451 ntTSL 5 BASIC10.65□□□□□ -0.7
Hmgb3O54879 Smarcd2-203ENSMUST00000106843 2548 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
Hmgb3O54879 Lypla1-201ENSMUST00000027036 2507 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Hmgb3O54879 Trappc2l-201ENSMUST00000015157 1659 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Hmgb3O54879 Cry2-201ENSMUST00000090559 3976 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Hmgb3O54879 Heatr6-201ENSMUST00000001002 5614 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Hmgb3O54879 Dus2-201ENSMUST00000034375 1860 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Hmgb3O54879 Trpv4-204ENSMUST00000112222 2475 ntTSL 5 BASIC10.65□□□□□ -0.7
Hmgb3O54879 Col24a1-201ENSMUST00000029848 7143 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Hmgb3O54879 Trp53-202ENSMUST00000108657 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC10.65□□□□□ -0.71
Hmgb3O54879 Hspb8-201ENSMUST00000036991 1816 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.71
Hmgb3O54879 Vsx2-202ENSMUST00000169934 3249 ntTSL 1 (best) BASIC10.65□□□□□ -0.71
Hmgb3O54879 Glrx3-203ENSMUST00000211496 3440 ntAPPRIS ALT2 TSL 1 (best) BASIC10.65□□□□□ -0.71
Hmgb3O54879 Pofut1-201ENSMUST00000049863 5600 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.71
Hmgb3O54879 Gck-203ENSMUST00000109823 2361 ntTSL 5 BASIC10.65□□□□□ -0.71
Hmgb3O54879 Gm44292-201ENSMUST00000205194 2364 ntBASIC10.65□□□□□ -0.71
Hmgb3O54879 Ankrd26-201ENSMUST00000112830 6930 ntAPPRIS P1 TSL 5 BASIC10.65□□□□□ -0.71
Hmgb3O54879 Sirt4-201ENSMUST00000112066 1794 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.71
Hmgb3O54879 Mfap3l-203ENSMUST00000161421 4142 ntTSL 1 (best) BASIC10.65□□□□□ -0.71
Hmgb3O54879 Gm34016-201ENSMUST00000222678 1384 ntTSL 1 (best) BASIC10.65□□□□□ -0.71
Hmgb3O54879 Pik3cd-203ENSMUST00000105689 3132 ntAPPRIS ALT1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Hmgb3O54879 Foxp1-205ENSMUST00000113324 2121 ntTSL 5 BASIC10.64□□□□□ -0.71
Hmgb3O54879 Foxp1-207ENSMUST00000113328 2121 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
Hmgb3O54879 Foxp1-228ENSMUST00000177307 2121 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
Hmgb3O54879 Gm33543-203ENSMUST00000211096 1722 ntAPPRIS P5 TSL 5 BASIC10.64□□□□□ -0.71
Hmgb3O54879 Abhd18-202ENSMUST00000108078 2492 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Hmgb3O54879 Vdr-201ENSMUST00000023119 4370 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Hmgb3O54879 Hdac6-201ENSMUST00000033501 4142 ntAPPRIS P1 TSL 5 BASIC10.64□□□□□ -0.71
Hmgb3O54879 Gabra1-201ENSMUST00000020707 4688 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Hmgb3O54879 Tal1-203ENSMUST00000161601 3703 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Hmgb3O54879 Pnpla5-201ENSMUST00000019012 1694 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Hmgb3O54879 Neil1-203ENSMUST00000190245 1693 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Hmgb3O54879 Scrn1-201ENSMUST00000019268 4810 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Hmgb3O54879 Gm26770-201ENSMUST00000180586 2237 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
Hmgb3O54879 AC164702.1-201ENSMUST00000220135 2212 ntBASIC10.64□□□□□ -0.71
Hmgb3O54879 Zap70-201ENSMUST00000027291 2245 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Hmgb3O54879 Accsl-201ENSMUST00000099690 2224 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Hmgb3O54879 Usp2-201ENSMUST00000034508 3867 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
Hmgb3O54879 Myg1-202ENSMUST00000113682 1480 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Hmgb3O54879 Pak6-202ENSMUST00000110853 3677 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Hmgb3O54879 Tor1aip1-202ENSMUST00000097527 4234 ntAPPRIS ALT2 TSL 1 (best) BASIC10.64□□□□□ -0.71
Hmgb3O54879 Gtf3c1-201ENSMUST00000055506 6961 ntAPPRIS P2 TSL 1 (best) BASIC10.64□□□□□ -0.71
Hmgb3O54879 Rgs12-207ENSMUST00000114285 2924 ntAPPRIS ALT2 TSL 5 BASIC10.64□□□□□ -0.71
Hmgb3O54879 Cnn1-201ENSMUST00000001384 2381 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Hmgb3O54879 Pianp-206ENSMUST00000162000 2396 ntAPPRIS ALT2 TSL 5 BASIC10.64□□□□□ -0.71
Hmgb3O54879 Lenep-201ENSMUST00000057431 1806 ntAPPRIS P1 BASIC10.64□□□□□ -0.71
Hmgb3O54879 Wfdc3-201ENSMUST00000103096 911 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Hmgb3O54879 Rabepk-202ENSMUST00000113086 1106 ntTSL 5 BASIC10.64□□□□□ -0.71
Hmgb3O54879 Ifnar2-203ENSMUST00000117836 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC10.64□□□□□ -0.71
Hmgb3O54879 Gm11723-201ENSMUST00000155505 466 ntTSL 3 BASIC10.64□□□□□ -0.71
Hmgb3O54879 Mfap2-203ENSMUST00000166376 890 ntAPPRIS P1 TSL 2 BASIC10.64□□□□□ -0.71
Hmgb3O54879 9130230N09Rik-201ENSMUST00000174568 663 ntTSL 3 BASIC10.64□□□□□ -0.71
Hmgb3O54879 4930519L02Rik-201ENSMUST00000197683 619 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
Hmgb3O54879 Gm45841-201ENSMUST00000207700 164 ntBASIC10.64□□□□□ -0.71
Hmgb3O54879 Gm45612-201ENSMUST00000211320 160 ntBASIC10.64□□□□□ -0.71
Hmgb3O54879 9430081H08Rik-201ENSMUST00000217460 818 ntBASIC10.64□□□□□ -0.71
Hmgb3O54879 Gm16476-201ENSMUST00000221544 139 ntBASIC10.64□□□□□ -0.71
Hmgb3O54879 Gm2270-201ENSMUST00000222858 797 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
Hmgb3O54879 Ly6g6f-201ENSMUST00000038507 1141 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Hmgb3O54879 Lce3c-201ENSMUST00000055375 567 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Hmgb3O54879 Rph3a-201ENSMUST00000079204 4150 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Hmgb3O54879 Cd276-202ENSMUST00000165365 3603 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Hmgb3O54879 Ctsl-201ENSMUST00000021933 1971 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Hmgb3O54879 Gm37391-201ENSMUST00000194891 2318 ntBASIC10.64□□□□□ -0.71
Hmgb3O54879 Cul5-201ENSMUST00000034529 3585 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Retrieved 100 of 76,532 protein–RNA pairs in 85.5 ms