Protein–RNA interactions for Protein: D3Z4R1

Hfm1, Probable ATP-dependent DNA helicase HFM1, mousemouse

Predictions only

Length 1,434 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hfm1D3Z4R1 Hsh2d-202ENSMUST00000165324 1238 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Hfm1D3Z4R1 Glmp-208ENSMUST00000176519 447 ntTSL 5 BASIC17.81■□□□□ 0.44
Hfm1D3Z4R1 Gm28516-201ENSMUST00000190257 663 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Hfm1D3Z4R1 Ighv4-2-201ENSMUST00000192975 362 ntBASIC17.81■□□□□ 0.44
Hfm1D3Z4R1 U2af1l4-201ENSMUST00000043273 884 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Hfm1D3Z4R1 Krtap19-9b-201ENSMUST00000077715 461 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
Hfm1D3Z4R1 Suv39h1-201ENSMUST00000115636 2707 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Hfm1D3Z4R1 Tmem220-201ENSMUST00000061786 1597 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Hfm1D3Z4R1 Gpr135-201ENSMUST00000050649 3150 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
Hfm1D3Z4R1 Pja1-204ENSMUST00000113797 1676 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
Hfm1D3Z4R1 Slc6a9-210ENSMUST00000169885 1876 ntTSL 5 BASIC17.8■□□□□ 0.44
Hfm1D3Z4R1 Rfx7-202ENSMUST00000163401 7880 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
Hfm1D3Z4R1 Pla2g4c-204ENSMUST00000167232 2154 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
Hfm1D3Z4R1 Tnrc6c-202ENSMUST00000106344 8847 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
Hfm1D3Z4R1 Esrrb-202ENSMUST00000110203 2363 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Hfm1D3Z4R1 Zkscan4-201ENSMUST00000062609 2400 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
Hfm1D3Z4R1 Kif1c-201ENSMUST00000072187 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Hfm1D3Z4R1 Zfp575-201ENSMUST00000094705 2741 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Hfm1D3Z4R1 Fosl2-201ENSMUST00000031017 6537 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Hfm1D3Z4R1 Atxn7-201ENSMUST00000022257 6853 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Hfm1D3Z4R1 Cela3b-201ENSMUST00000102522 926 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Hfm1D3Z4R1 Mfge8-202ENSMUST00000107409 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Hfm1D3Z4R1 Flrt2-202ENSMUST00000110117 3223 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Hfm1D3Z4R1 Odf2-203ENSMUST00000113755 2305 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Hfm1D3Z4R1 Hnrnpm-202ENSMUST00000114385 2550 ntTSL 2 BASIC17.8■□□□□ 0.44
Hfm1D3Z4R1 Rbm18-202ENSMUST00000122456 781 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Hfm1D3Z4R1 Dnmt3l-202ENSMUST00000123940 1452 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Hfm1D3Z4R1 Gm13073-201ENSMUST00000134059 486 ntTSL 3 BASIC17.8■□□□□ 0.44
Hfm1D3Z4R1 Lnx1-209ENSMUST00000153543 2208 ntTSL 5 BASIC17.8■□□□□ 0.44
Hfm1D3Z4R1 Poli-205ENSMUST00000161542 2736 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Hfm1D3Z4R1 9330159M07Rik-202ENSMUST00000180783 1044 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Hfm1D3Z4R1 Gm26685-201ENSMUST00000181831 2023 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Hfm1D3Z4R1 Gm37419-201ENSMUST00000210705 114 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
Hfm1D3Z4R1 AC169511.2-201ENSMUST00000226674 2063 ntBASIC17.8■□□□□ 0.44
Hfm1D3Z4R1 AC130671.2-201ENSMUST00000227224 1621 ntBASIC17.8■□□□□ 0.44
Hfm1D3Z4R1 Csnk2b-201ENSMUST00000025246 961 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Hfm1D3Z4R1 Tmem258-201ENSMUST00000040372 606 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Hfm1D3Z4R1 Mdm4-201ENSMUST00000067398 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Hfm1D3Z4R1 Yaf2-201ENSMUST00000080299 1676 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Hfm1D3Z4R1 Catip-201ENSMUST00000097697 2101 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Hfm1D3Z4R1 Sema6c-203ENSMUST00000107217 3595 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Hfm1D3Z4R1 Wwox-202ENSMUST00000109107 2383 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Hfm1D3Z4R1 Cdk5rap1-203ENSMUST00000109731 2160 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
Hfm1D3Z4R1 Gm5847-201ENSMUST00000178959 1595 ntBASIC17.79■□□□□ 0.44
Hfm1D3Z4R1 Cdk10-212ENSMUST00000213005 1580 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Hfm1D3Z4R1 Pax2-201ENSMUST00000004340 3095 ntTSL 5 BASIC17.79■□□□□ 0.44
Hfm1D3Z4R1 Ncbp1-201ENSMUST00000030014 3010 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Hfm1D3Z4R1 Gm37165-201ENSMUST00000193815 1463 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Hfm1D3Z4R1 Pisd-ps2-201ENSMUST00000127960 1424 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Hfm1D3Z4R1 E530011L22Rik-201ENSMUST00000181325 5282 ntBASIC17.79■□□□□ 0.44
Hfm1D3Z4R1 Tprkb-203ENSMUST00000113751 692 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Hfm1D3Z4R1 Gm13809-201ENSMUST00000117921 597 ntBASIC17.79■□□□□ 0.44
Hfm1D3Z4R1 Mir1901-201ENSMUST00000122616 78 ntBASIC17.79■□□□□ 0.44
Hfm1D3Z4R1 Immp2l-202ENSMUST00000132121 1147 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
Hfm1D3Z4R1 2310057J18Rik-204ENSMUST00000152363 1043 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Hfm1D3Z4R1 Gm16251-201ENSMUST00000162649 338 ntTSL 3 BASIC17.79■□□□□ 0.44
Hfm1D3Z4R1 Ssty2-201ENSMUST00000179136 684 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
Hfm1D3Z4R1 Gm8100-201ENSMUST00000182906 988 ntBASIC17.79■□□□□ 0.44
Hfm1D3Z4R1 Gm9358-201ENSMUST00000183067 927 ntBASIC17.79■□□□□ 0.44
Hfm1D3Z4R1 Ssty2-202ENSMUST00000190565 1216 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Hfm1D3Z4R1 Gm44958-201ENSMUST00000203734 736 ntBASIC17.79■□□□□ 0.44
Hfm1D3Z4R1 Gm9132-201ENSMUST00000210182 832 ntBASIC17.79■□□□□ 0.44
Hfm1D3Z4R1 CT030637.1-201ENSMUST00000228016 669 ntBASIC17.79■□□□□ 0.44
Hfm1D3Z4R1 Nsd3-204ENSMUST00000139966 5261 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
Hfm1D3Z4R1 Nectin3-202ENSMUST00000023335 9116 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Hfm1D3Z4R1 Arhgap44-203ENSMUST00000093002 3982 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
Hfm1D3Z4R1 Il11ra1-203ENSMUST00000108041 1953 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Hfm1D3Z4R1 Cbl-201ENSMUST00000037644 4901 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Hfm1D3Z4R1 Arhgap42-201ENSMUST00000093893 6116 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Hfm1D3Z4R1 Gm10785-201ENSMUST00000156242 1583 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Hfm1D3Z4R1 Col27a1-201ENSMUST00000036300 7612 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Hfm1D3Z4R1 Diras2-201ENSMUST00000057442 4786 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Hfm1D3Z4R1 B430119L08Rik-201ENSMUST00000130054 1994 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Hfm1D3Z4R1 Gm24891-201ENSMUST00000104391 136 ntBASIC17.78■□□□□ 0.44
Hfm1D3Z4R1 Gm11752-201ENSMUST00000143291 510 ntTSL 2 BASIC17.78■□□□□ 0.44
Hfm1D3Z4R1 4933421O10Rik-201ENSMUST00000155691 3847 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Hfm1D3Z4R1 Ager-207ENSMUST00000173992 1248 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Hfm1D3Z4R1 Gm8343-201ENSMUST00000182705 994 ntBASIC17.78■□□□□ 0.44
Hfm1D3Z4R1 Mir7076-201ENSMUST00000183519 74 ntBASIC17.78■□□□□ 0.44
Hfm1D3Z4R1 Gm29155-201ENSMUST00000185910 269 ntBASIC17.78■□□□□ 0.44
Hfm1D3Z4R1 Rpl36-ps9-201ENSMUST00000196458 277 ntBASIC17.78■□□□□ 0.44
Hfm1D3Z4R1 Gm2965-201ENSMUST00000198365 343 ntBASIC17.78■□□□□ 0.44
Hfm1D3Z4R1 Gm6145-204ENSMUST00000210902 1266 ntTSL 5 BASIC17.78■□□□□ 0.44
Hfm1D3Z4R1 AC158523.3-201ENSMUST00000220664 864 ntTSL 5 BASIC17.78■□□□□ 0.44
Hfm1D3Z4R1 Gm9785-201ENSMUST00000062642 1006 ntBASIC17.78■□□□□ 0.44
Hfm1D3Z4R1 Snora73b-201ENSMUST00000083419 205 ntBASIC17.78■□□□□ 0.44
Hfm1D3Z4R1 Polr3g-201ENSMUST00000048993 3054 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Hfm1D3Z4R1 Mmgt2-203ENSMUST00000129162 1828 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
Hfm1D3Z4R1 Olfm2-201ENSMUST00000034692 1836 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Hfm1D3Z4R1 Lpar1-201ENSMUST00000055018 3512 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
Hfm1D3Z4R1 Shmt2-206ENSMUST00000219239 2238 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Hfm1D3Z4R1 Pde3b-201ENSMUST00000032909 6573 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Hfm1D3Z4R1 Kcnma1-228ENSMUST00000224468 3753 ntAPPRIS ALT2 BASIC17.78■□□□□ 0.44
Hfm1D3Z4R1 Sez6-202ENSMUST00000093995 4239 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
Hfm1D3Z4R1 Capn15-205ENSMUST00000212520 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Hfm1D3Z4R1 Ankle2-206ENSMUST00000197188 4077 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
Hfm1D3Z4R1 Cd72-205ENSMUST00000107926 1419 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
Hfm1D3Z4R1 Cd72-203ENSMUST00000098105 1420 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Hfm1D3Z4R1 Klhl29-201ENSMUST00000020958 7041 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Hfm1D3Z4R1 Plxnd1-201ENSMUST00000015511 6907 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Retrieved 100 of 76,532 protein–RNA pairs in 36.6 ms