Protein–RNA interactions for Protein: Q99LI9

Clp1, Polyribonucleotide 5'-hydroxyl-kinase Clp1, mousemouse

Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clp1Q99LI9 4930550C17Rik-201ENSMUST00000181629 1411 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Clp1Q99LI9 Ank3-234ENSMUST00000182993 1233 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Clp1Q99LI9 Ralyl-206ENSMUST00000193117 2933 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
Clp1Q99LI9 Gm37835-201ENSMUST00000193305 361 ntBASIC13.6□□□□□ -0.23
Clp1Q99LI9 Gm37666-201ENSMUST00000194110 866 ntBASIC13.6□□□□□ -0.23
Clp1Q99LI9 Zfp706-203ENSMUST00000226453 517 ntAPPRIS P1 BASIC13.6□□□□□ -0.23
Clp1Q99LI9 Dnajc4-201ENSMUST00000025915 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
Clp1Q99LI9 Ly6g5c-201ENSMUST00000037849 509 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Clp1Q99LI9 Taf2-201ENSMUST00000041733 5031 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Clp1Q99LI9 Snx10-201ENSMUST00000049152 2480 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Clp1Q99LI9 Mir339-201ENSMUST00000083659 96 ntBASIC13.6□□□□□ -0.23
Clp1Q99LI9 Nfatc1-202ENSMUST00000078049 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
Clp1Q99LI9 Zbtb5-201ENSMUST00000055028 4316 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Clp1Q99LI9 Wdfy3-206ENSMUST00000174698 3858 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Clp1Q99LI9 Hmga2-201ENSMUST00000072777 3710 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Clp1Q99LI9 Tbc1d22b-201ENSMUST00000048677 3592 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Clp1Q99LI9 Ppp1r15a-202ENSMUST00000167273 2809 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
Clp1Q99LI9 Cpne1-203ENSMUST00000109608 3492 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Clp1Q99LI9 Kcna5-201ENSMUST00000060972 2862 ntAPPRIS P1 BASIC13.6□□□□□ -0.23
Clp1Q99LI9 Fam149b-211ENSMUST00000224930 2716 ntAPPRIS ALT2 BASIC13.6□□□□□ -0.23
Clp1Q99LI9 Gm8206-201ENSMUST00000164139 1956 ntTSL 5 BASIC13.6□□□□□ -0.23
Clp1Q99LI9 Ate1-202ENSMUST00000035458 4685 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
Clp1Q99LI9 Cybrd1-201ENSMUST00000028403 5339 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Clp1Q99LI9 Mslnl-201ENSMUST00000047098 2628 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Clp1Q99LI9 Slc3a2-207ENSMUST00000206598 1393 ntTSL 2 BASIC13.59□□□□□ -0.23
Clp1Q99LI9 Carmil3-201ENSMUST00000076236 4602 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
Clp1Q99LI9 Chodl-201ENSMUST00000023568 2535 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Clp1Q99LI9 Ccny-201ENSMUST00000053917 4017 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Clp1Q99LI9 Dlg4-201ENSMUST00000018700 3204 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
Clp1Q99LI9 Cacna1g-209ENSMUST00000107791 8002 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.23
Clp1Q99LI9 Gpr19-204ENSMUST00000116515 2075 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Clp1Q99LI9 C030005K06Rik-201ENSMUST00000129164 2076 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Clp1Q99LI9 Acot3-201ENSMUST00000021653 3431 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
Clp1Q99LI9 Sdha-201ENSMUST00000022062 2900 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Clp1Q99LI9 Rbpsuh-rs3-201ENSMUST00000182751 1441 ntBASIC13.59□□□□□ -0.23
Clp1Q99LI9 Stx5a-201ENSMUST00000010254 1780 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.23
Clp1Q99LI9 Gm43738-201ENSMUST00000200659 2635 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
Clp1Q99LI9 Mir874-201ENSMUST00000104769 76 ntBASIC13.59□□□□□ -0.23
Clp1Q99LI9 Gm11568-201ENSMUST00000107434 1145 ntAPPRIS P1 BASIC13.59□□□□□ -0.23
Clp1Q99LI9 Gm6335-201ENSMUST00000118081 1194 ntBASIC13.59□□□□□ -0.23
Clp1Q99LI9 Gm7816-201ENSMUST00000119884 1194 ntBASIC13.59□□□□□ -0.23
Clp1Q99LI9 Gm15542-201ENSMUST00000121585 1194 ntBASIC13.59□□□□□ -0.23
Clp1Q99LI9 Gm10714-201ENSMUST00000131346 874 ntTSL 2 BASIC13.59□□□□□ -0.23
Clp1Q99LI9 Gm11630-201ENSMUST00000152825 382 ntTSL 2 BASIC13.59□□□□□ -0.23
Clp1Q99LI9 Tmem116-209ENSMUST00000156080 1184 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Clp1Q99LI9 Gm9550-201ENSMUST00000161130 862 ntBASIC13.59□□□□□ -0.23
Clp1Q99LI9 Rps28-202ENSMUST00000166693 271 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
Clp1Q99LI9 Gm43584-201ENSMUST00000199762 605 ntTSL 3 BASIC13.59□□□□□ -0.23
Clp1Q99LI9 C230062I16Rik-204ENSMUST00000208342 643 ntTSL 3 BASIC13.59□□□□□ -0.23
Clp1Q99LI9 Aprt-203ENSMUST00000211823 590 ntTSL 3 BASIC13.59□□□□□ -0.23
Clp1Q99LI9 Cotl1-203ENSMUST00000211873 826 ntTSL 5 BASIC13.59□□□□□ -0.23
Clp1Q99LI9 Tpd52l1-203ENSMUST00000213639 827 ntAPPRIS ALT2 TSL 2 BASIC13.59□□□□□ -0.23
Clp1Q99LI9 Gm3898-202ENSMUST00000216905 328 ntTSL 2 BASIC13.59□□□□□ -0.23
Clp1Q99LI9 Gm9826-201ENSMUST00000029124 1299 ntBASIC13.59□□□□□ -0.23
Clp1Q99LI9 Gdap1l1-202ENSMUST00000109420 2475 ntAPPRIS P2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Clp1Q99LI9 AC122197.2-201ENSMUST00000219196 1635 ntBASIC13.59□□□□□ -0.23
Clp1Q99LI9 Sntb2-203ENSMUST00000212524 9945 ntAPPRIS P2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Clp1Q99LI9 Dnajc6-204ENSMUST00000106930 5127 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
Clp1Q99LI9 Atf7-202ENSMUST00000108828 2887 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Clp1Q99LI9 Thap2-202ENSMUST00000218842 4970 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Clp1Q99LI9 Tpr-201ENSMUST00000119161 7480 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.23
Clp1Q99LI9 Atat1-212ENSMUST00000141662 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Clp1Q99LI9 Kmt2e-202ENSMUST00000115128 7317 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
Clp1Q99LI9 Gm17518-201ENSMUST00000181232 1346 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Clp1Q99LI9 Flt4-201ENSMUST00000020617 6255 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Clp1Q99LI9 Epha1-201ENSMUST00000073387 3273 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Clp1Q99LI9 Mief1-201ENSMUST00000023048 5081 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Clp1Q99LI9 Zfp422-202ENSMUST00000079749 3187 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Clp1Q99LI9 Bop1-201ENSMUST00000023217 2476 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
Clp1Q99LI9 Mrap2-201ENSMUST00000049457 1931 ntAPPRIS P1 TSL 3 BASIC13.58□□□□□ -0.23
Clp1Q99LI9 Nfasc-201ENSMUST00000043189 5072 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.23
Clp1Q99LI9 Nr4a2-203ENSMUST00000112629 3422 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.23
Clp1Q99LI9 Tmem198b-201ENSMUST00000051011 2335 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
Clp1Q99LI9 F2-201ENSMUST00000028681 1988 ntAPPRIS P2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Clp1Q99LI9 Dcun1d3-206ENSMUST00000207233 2917 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
Clp1Q99LI9 Pfkfb3-212ENSMUST00000170196 2163 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Clp1Q99LI9 Cfl1-202ENSMUST00000209469 2354 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Clp1Q99LI9 Bcat1-202ENSMUST00000048252 1642 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Clp1Q99LI9 Gpr137c-201ENSMUST00000146150 3917 ntAPPRIS P2 TSL 5 BASIC13.58□□□□□ -0.24
Clp1Q99LI9 Ubiad1-201ENSMUST00000051633 2992 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Clp1Q99LI9 Nat8f3-201ENSMUST00000050780 1821 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Clp1Q99LI9 Pfkfb3-203ENSMUST00000100411 2008 ntTSL 5 BASIC13.58□□□□□ -0.24
Clp1Q99LI9 Slc46a3-201ENSMUST00000031655 2434 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Clp1Q99LI9 Scn4b-201ENSMUST00000060125 4982 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Clp1Q99LI9 Slc5a6-202ENSMUST00000114668 3436 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Clp1Q99LI9 Limd2-203ENSMUST00000106875 936 ntAPPRIS P1 TSL 3 BASIC13.58□□□□□ -0.24
Clp1Q99LI9 Qdpr-202ENSMUST00000117425 1231 ntTSL 3 BASIC13.58□□□□□ -0.24
Clp1Q99LI9 Gm17227-202ENSMUST00000170286 1016 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Clp1Q99LI9 Gm18734-201ENSMUST00000172937 808 ntBASIC13.58□□□□□ -0.24
Clp1Q99LI9 1110002L01Rik-203ENSMUST00000179637 586 ntTSL 5 BASIC13.58□□□□□ -0.24
Clp1Q99LI9 AU022133-201ENSMUST00000200601 873 ntBASIC13.58□□□□□ -0.24
Clp1Q99LI9 Gm17812-201ENSMUST00000204935 318 ntBASIC13.58□□□□□ -0.24
Clp1Q99LI9 Gm45118-201ENSMUST00000208928 825 ntBASIC13.58□□□□□ -0.24
Clp1Q99LI9 Gm18730-201ENSMUST00000218038 343 ntBASIC13.58□□□□□ -0.24
Clp1Q99LI9 Gm6991-201ENSMUST00000218475 1178 ntBASIC13.58□□□□□ -0.24
Clp1Q99LI9 AC131743.2-201ENSMUST00000221031 968 ntTSL 5 BASIC13.58□□□□□ -0.24
Clp1Q99LI9 AC132446.1-201ENSMUST00000222655 226 ntBASIC13.58□□□□□ -0.24
Clp1Q99LI9 4930447K03Rik-201ENSMUST00000222745 1033 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Clp1Q99LI9 Hnrnpf-203ENSMUST00000167182 2271 ntAPPRIS P1 TSL 3 BASIC13.58□□□□□ -0.24
Clp1Q99LI9 Slc39a11-203ENSMUST00000106633 2688 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Retrieved 100 of 76,532 protein–RNA pairs in 46.9 ms