Protein–RNA interactions for Protein: Q8BI79

Ccdc40, Coiled-coil domain-containing protein 40, mousemouse

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40Q8BI79 Ift27-201ENSMUST00000016781 1012 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Ccdc40Q8BI79 Ly6g6e-203ENSMUST00000172678 750 ntAPPRIS P2 TSL 3 BASIC13.54□□□□□ -0.24
Ccdc40Q8BI79 Il31-203ENSMUST00000198901 984 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Ccdc40Q8BI79 Mpv17-207ENSMUST00000201491 923 ntTSL 2 BASIC13.54□□□□□ -0.24
Ccdc40Q8BI79 Uqcr10-201ENSMUST00000058407 434 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Ccdc40Q8BI79 Gm10188-201ENSMUST00000086544 720 ntAPPRIS P1 BASIC13.54□□□□□ -0.24
Ccdc40Q8BI79 Ccdc22-201ENSMUST00000033483 2353 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Ccdc40Q8BI79 Insrr-201ENSMUST00000029711 5102 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Ccdc40Q8BI79 Gm45332-201ENSMUST00000210508 1949 ntTSL 5 BASIC13.54□□□□□ -0.24
Ccdc40Q8BI79 Polr3g-201ENSMUST00000048993 3054 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Ccdc40Q8BI79 Tmtc3-201ENSMUST00000058154 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Ccdc40Q8BI79 Sdc1-201ENSMUST00000020911 3157 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Ccdc40Q8BI79 Hadhb-203ENSMUST00000114786 2048 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Ccdc40Q8BI79 Traf6-201ENSMUST00000004949 6169 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Ccdc40Q8BI79 Gm14342-201ENSMUST00000137629 2119 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Ccdc40Q8BI79 Eme2-201ENSMUST00000119848 5226 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Ccdc40Q8BI79 Cd163l1-203ENSMUST00000209398 3437 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Ccdc40Q8BI79 Rita1-201ENSMUST00000031599 1573 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Ccdc40Q8BI79 Muc1-201ENSMUST00000041142 2242 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Ccdc40Q8BI79 Rgs12-207ENSMUST00000114285 2924 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
Ccdc40Q8BI79 Cep41-203ENSMUST00000115131 2256 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
Ccdc40Q8BI79 Zfp536-203ENSMUST00000176114 4341 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Ccdc40Q8BI79 H2-T22-202ENSMUST00000077960 1694 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
Ccdc40Q8BI79 Slc22a5-201ENSMUST00000019044 3062 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Ccdc40Q8BI79 Gm26747-201ENSMUST00000180597 1716 ntTSL 5 BASIC13.53□□□□□ -0.24
Ccdc40Q8BI79 Zfand2a-202ENSMUST00000110851 3121 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Ccdc40Q8BI79 Mapt-204ENSMUST00000106992 5253 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Ccdc40Q8BI79 4930563D23Rik-201ENSMUST00000062638 2646 ntAPPRIS P1 BASIC13.53□□□□□ -0.24
Ccdc40Q8BI79 Gm15459-201ENSMUST00000117405 1941 ntBASIC13.53□□□□□ -0.24
Ccdc40Q8BI79 Gm8355-201ENSMUST00000177767 1941 ntBASIC13.53□□□□□ -0.24
Ccdc40Q8BI79 Trim29-201ENSMUST00000034511 2735 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Ccdc40Q8BI79 Rp2-201ENSMUST00000033372 4417 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Ccdc40Q8BI79 Pi4kb-201ENSMUST00000072287 3692 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Ccdc40Q8BI79 Pias3-202ENSMUST00000107076 2858 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Ccdc40Q8BI79 Gm6161-201ENSMUST00000121942 1102 ntBASIC13.53□□□□□ -0.24
Ccdc40Q8BI79 4933427I22Rik-201ENSMUST00000138672 393 ntTSL 3 BASIC13.53□□□□□ -0.24
Ccdc40Q8BI79 Gm11574-201ENSMUST00000139752 946 ntTSL 5 BASIC13.53□□□□□ -0.24
Ccdc40Q8BI79 Hnrnpa3-207ENSMUST00000164947 1074 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
Ccdc40Q8BI79 Gm6254-201ENSMUST00000168178 1072 ntBASIC13.53□□□□□ -0.24
Ccdc40Q8BI79 Gm6153-201ENSMUST00000172004 1058 ntBASIC13.53□□□□□ -0.24
Ccdc40Q8BI79 Gm9242-201ENSMUST00000177820 1074 ntAPPRIS P1 BASIC13.53□□□□□ -0.24
Ccdc40Q8BI79 Rab10os-207ENSMUST00000179924 823 ntTSL 5 BASIC13.53□□□□□ -0.24
Ccdc40Q8BI79 Gm5641-202ENSMUST00000198699 1080 ntBASIC13.53□□□□□ -0.24
Ccdc40Q8BI79 Gm45785-201ENSMUST00000209690 988 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
Ccdc40Q8BI79 Bpnt1-205ENSMUST00000210277 1226 ntTSL 5 BASIC13.53□□□□□ -0.24
Ccdc40Q8BI79 Gm45668-201ENSMUST00000211271 493 ntBASIC13.53□□□□□ -0.24
Ccdc40Q8BI79 4930502A04Rik-201ENSMUST00000214059 865 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Ccdc40Q8BI79 Tspan3-203ENSMUST00000215906 842 ntTSL 3 BASIC13.53□□□□□ -0.24
Ccdc40Q8BI79 CT573086.1-201ENSMUST00000227202 1074 ntBASIC13.53□□□□□ -0.24
Ccdc40Q8BI79 AC134335.2-201ENSMUST00000227660 440 ntBASIC13.53□□□□□ -0.24
Ccdc40Q8BI79 Brdt-201ENSMUST00000031215 4745 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Ccdc40Q8BI79 Ccdc170-201ENSMUST00000019901 2151 ntAPPRIS P2 TSL 5 BASIC13.53□□□□□ -0.24
Ccdc40Q8BI79 Nt5c3b-203ENSMUST00000107397 1348 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Ccdc40Q8BI79 Gm44891-201ENSMUST00000208817 2223 ntBASIC13.53□□□□□ -0.24
Ccdc40Q8BI79 Rgs6-204ENSMUST00000185674 1362 ntTSL 5 BASIC13.53□□□□□ -0.24
Ccdc40Q8BI79 Gm16244-201ENSMUST00000159313 2327 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Ccdc40Q8BI79 Plekha7-203ENSMUST00000181998 5149 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Ccdc40Q8BI79 Crx-203ENSMUST00000172758 1469 ntTSL 3 BASIC13.53□□□□□ -0.24
Ccdc40Q8BI79 Tekt2-201ENSMUST00000030658 1492 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Ccdc40Q8BI79 Slc2a4-201ENSMUST00000018710 2524 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Ccdc40Q8BI79 Ccdc160-201ENSMUST00000101588 1536 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Ccdc40Q8BI79 Map4k2-201ENSMUST00000025897 4644 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Ccdc40Q8BI79 Gm8994-202ENSMUST00000204530 1573 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Ccdc40Q8BI79 Srrm1-202ENSMUST00000084846 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Ccdc40Q8BI79 Rnf180-201ENSMUST00000069686 1728 ntAPPRIS P2 TSL 5 BASIC13.53□□□□□ -0.24
Ccdc40Q8BI79 Gm4858-202ENSMUST00000194595 1810 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Ccdc40Q8BI79 Slc25a42-201ENSMUST00000063788 3081 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
Ccdc40Q8BI79 Acbd5-213ENSMUST00000227809 1986 ntAPPRIS ALT2 BASIC13.52□□□□□ -0.24
Ccdc40Q8BI79 Tbx3-203ENSMUST00000121021 4777 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Ccdc40Q8BI79 Myoc-201ENSMUST00000028020 2074 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Ccdc40Q8BI79 Myo6-204ENSMUST00000113268 7927 ntTSL 5 BASIC13.52□□□□□ -0.24
Ccdc40Q8BI79 Sv2c-203ENSMUST00000182289 2197 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
Ccdc40Q8BI79 Ctdspl2-201ENSMUST00000036647 5053 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.24
Ccdc40Q8BI79 Bmp7-201ENSMUST00000009143 3670 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Ccdc40Q8BI79 B3gat1-204ENSMUST00000160899 3801 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
Ccdc40Q8BI79 Chst3-201ENSMUST00000068690 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.24
Ccdc40Q8BI79 Ntsr1-202ENSMUST00000170448 2594 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Ccdc40Q8BI79 Pla2g6-206ENSMUST00000173163 3018 ntTSL 5 BASIC13.52□□□□□ -0.24
Ccdc40Q8BI79 Ddx19b-202ENSMUST00000065784 3104 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
Ccdc40Q8BI79 Ssh1-201ENSMUST00000077689 3164 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.24
Ccdc40Q8BI79 Usp53-202ENSMUST00000197314 3586 ntTSL 5 BASIC13.52□□□□□ -0.25
Ccdc40Q8BI79 Ighv5-17-201ENSMUST00000103459 405 ntAPPRIS P1 BASIC13.52□□□□□ -0.25
Ccdc40Q8BI79 0610010K14Rik-205ENSMUST00000108575 643 ntTSL 2 BASIC13.52□□□□□ -0.25
Ccdc40Q8BI79 Rab4a-201ENSMUST00000117702 1080 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Ccdc40Q8BI79 Rpl17-ps5-201ENSMUST00000121001 555 ntBASIC13.52□□□□□ -0.25
Ccdc40Q8BI79 4930407G08Rik-201ENSMUST00000145831 698 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Ccdc40Q8BI79 Gm16000-201ENSMUST00000146657 447 ntTSL 2 BASIC13.52□□□□□ -0.25
Ccdc40Q8BI79 Dhrs2-202ENSMUST00000165432 849 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.25
Ccdc40Q8BI79 Gm43714-201ENSMUST00000198351 1204 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Ccdc40Q8BI79 Gm44985-201ENSMUST00000206202 1016 ntBASIC13.52□□□□□ -0.25
Ccdc40Q8BI79 Myl6-205ENSMUST00000217969 608 ntTSL 2 BASIC13.52□□□□□ -0.25
Ccdc40Q8BI79 Gm4129-201ENSMUST00000220083 625 ntTSL 3 BASIC13.52□□□□□ -0.25
Ccdc40Q8BI79 Ccdc58-201ENSMUST00000099937 747 ntTSL 3 BASIC13.52□□□□□ -0.25
Ccdc40Q8BI79 Shisa9-201ENSMUST00000023138 4326 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
Ccdc40Q8BI79 Gif-201ENSMUST00000025585 1537 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Ccdc40Q8BI79 Fip1l1-201ENSMUST00000080164 4673 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.25
Ccdc40Q8BI79 Nepn-201ENSMUST00000067085 1844 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Ccdc40Q8BI79 Rfx6-204ENSMUST00000219364 2682 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Ccdc40Q8BI79 Gm10097-201ENSMUST00000180100 2784 ntAPPRIS P1 BASIC13.52□□□□□ -0.25
Ccdc40Q8BI79 Tfe3-204ENSMUST00000115677 2943 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Retrieved 100 of 76,532 protein–RNA pairs in 46.2 ms