Protein–RNA interactions for Protein: Q811S7

Ubp1, Upstream-binding protein 1, mousemouse

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubp1Q811S7 Gm37497-201ENSMUST00000195830 798 ntBASIC12.79□□□□□ -0.36
Ubp1Q811S7 Gm9299-201ENSMUST00000206392 1140 ntBASIC12.79□□□□□ -0.36
Ubp1Q811S7 Gm20219-201ENSMUST00000209718 1269 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
Ubp1Q811S7 AC135669.1-202ENSMUST00000216742 540 ntBASIC12.79□□□□□ -0.36
Ubp1Q811S7 AC122459.1-201ENSMUST00000228373 885 ntBASIC12.79□□□□□ -0.36
Ubp1Q811S7 Sh3bgrl3-201ENSMUST00000030651 743 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Ubp1Q811S7 Tomm7-201ENSMUST00000030851 1125 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Ubp1Q811S7 Cenpm-202ENSMUST00000089157 1201 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Ubp1Q811S7 Mixl1-201ENSMUST00000027778 2294 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Ubp1Q811S7 Kif13a-201ENSMUST00000056978 6866 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Ubp1Q811S7 Rph3a-203ENSMUST00000202326 2621 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Ubp1Q811S7 Ociad1-202ENSMUST00000071081 1311 ntTSL 3 BASIC12.79□□□□□ -0.36
Ubp1Q811S7 Gria4-203ENSMUST00000163309 2338 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Ubp1Q811S7 Bscl2-203ENSMUST00000159634 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Ubp1Q811S7 Gm38049-201ENSMUST00000195698 1372 ntBASIC12.79□□□□□ -0.36
Ubp1Q811S7 Pnoc-202ENSMUST00000224594 1388 ntAPPRIS ALT2 BASIC12.79□□□□□ -0.36
Ubp1Q811S7 Mcm8-201ENSMUST00000028831 3179 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Ubp1Q811S7 Otx2-201ENSMUST00000118578 2144 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Ubp1Q811S7 Arhgap20os-204ENSMUST00000152203 2113 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Ubp1Q811S7 Myh3-202ENSMUST00000108689 6031 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
Ubp1Q811S7 Riox2-203ENSMUST00000120674 1753 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Ubp1Q811S7 Ddo-203ENSMUST00000213503 1759 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Ubp1Q811S7 Rnft2-202ENSMUST00000121369 4431 ntAPPRIS ALT1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ubp1Q811S7 Sirt3-201ENSMUST00000026559 1461 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ubp1Q811S7 Tbkbp1-201ENSMUST00000066078 3338 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
Ubp1Q811S7 Itgal-201ENSMUST00000106306 5195 ntAPPRIS P4 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ubp1Q811S7 Alg2-201ENSMUST00000044148 3021 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ubp1Q811S7 Abi1-201ENSMUST00000078977 3027 ntAPPRIS ALT1 TSL 5 BASIC12.78□□□□□ -0.36
Ubp1Q811S7 Rnf214-205ENSMUST00000160699 2287 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ubp1Q811S7 Has3-203ENSMUST00000176144 4150 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ubp1Q811S7 Cngb1-201ENSMUST00000093268 1512 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Ubp1Q811S7 Ahdc1-201ENSMUST00000044521 6105 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ubp1Q811S7 Def8-203ENSMUST00000093049 1909 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ubp1Q811S7 Npepps-215ENSMUST00000167806 2307 ntTSL 5 BASIC12.78□□□□□ -0.36
Ubp1Q811S7 Setdb1-201ENSMUST00000015841 4658 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ubp1Q811S7 Gart-201ENSMUST00000023684 3518 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ubp1Q811S7 Adat1-203ENSMUST00000139820 2762 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Ubp1Q811S7 Ubqln1-202ENSMUST00000076454 3561 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ubp1Q811S7 Vash2-201ENSMUST00000047409 4032 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ubp1Q811S7 E230029C05Rik-202ENSMUST00000207458 2445 ntTSL 5 BASIC12.78□□□□□ -0.36
Ubp1Q811S7 AC137842.1-201ENSMUST00000227896 2064 ntBASIC12.78□□□□□ -0.36
Ubp1Q811S7 Ppl-201ENSMUST00000035672 6277 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ubp1Q811S7 Tufm-201ENSMUST00000098048 1679 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ubp1Q811S7 Folr1-205ENSMUST00000106986 1286 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ubp1Q811S7 Gm11425-201ENSMUST00000119608 498 ntBASIC12.78□□□□□ -0.36
Ubp1Q811S7 Crb3-204ENSMUST00000163763 868 ntAPPRIS P3 TSL 2 BASIC12.78□□□□□ -0.36
Ubp1Q811S7 Pdzd11-202ENSMUST00000059099 1041 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ubp1Q811S7 Gm9396-201ENSMUST00000076703 567 ntBASIC12.78□□□□□ -0.36
Ubp1Q811S7 Shisa9-202ENSMUST00000170672 3421 ntAPPRIS P4 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ubp1Q811S7 Bbof1-201ENSMUST00000081828 2187 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ubp1Q811S7 Plagl1-201ENSMUST00000121325 3946 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ubp1Q811S7 Brms1-201ENSMUST00000116567 1338 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ubp1Q811S7 Suv39h1-201ENSMUST00000115636 2707 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Ubp1Q811S7 2310007B03Rik-201ENSMUST00000043718 2299 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ubp1Q811S7 Gm20683-201ENSMUST00000176751 2790 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
Ubp1Q811S7 Dag1-204ENSMUST00000191899 5662 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ubp1Q811S7 Psmc3-203ENSMUST00000111441 1419 ntTSL 5 BASIC12.78□□□□□ -0.36
Ubp1Q811S7 Wnt9a-201ENSMUST00000000128 3320 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
Ubp1Q811S7 Ildr1-202ENSMUST00000089618 2850 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ubp1Q811S7 Eme1-201ENSMUST00000039949 2444 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ubp1Q811S7 Ptch2-201ENSMUST00000030443 4382 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ubp1Q811S7 Urgcp-204ENSMUST00000120306 3972 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ubp1Q811S7 Lrig2-201ENSMUST00000046316 7099 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ubp1Q811S7 Vps36-201ENSMUST00000033866 3574 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Ubp1Q811S7 Siglecf-203ENSMUST00000122423 2607 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.36
Ubp1Q811S7 Krt17-201ENSMUST00000080893 1551 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Ubp1Q811S7 Necab1-202ENSMUST00000108273 2135 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Ubp1Q811S7 Agrn-201ENSMUST00000071248 4831 ntTSL 5 BASIC12.77□□□□□ -0.36
Ubp1Q811S7 Cacna2d1-209ENSMUST00000199704 3861 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
Ubp1Q811S7 Lgals8-202ENSMUST00000099821 2792 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Ubp1Q811S7 Ackr4-204ENSMUST00000219146 1654 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.36
Ubp1Q811S7 Wnt9b-201ENSMUST00000018630 4518 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Ubp1Q811S7 Clec11a-201ENSMUST00000004587 2978 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Ubp1Q811S7 Saraf-201ENSMUST00000033933 1860 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Ubp1Q811S7 Kif5a-201ENSMUST00000099172 6295 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Ubp1Q811S7 Cox4i2-201ENSMUST00000010020 727 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Ubp1Q811S7 Zfp157-202ENSMUST00000100524 869 ntTSL 3 BASIC12.77□□□□□ -0.37
Ubp1Q811S7 Gm14127-201ENSMUST00000117906 678 ntBASIC12.77□□□□□ -0.37
Ubp1Q811S7 Gm14019-201ENSMUST00000131514 403 ntTSL 3 BASIC12.77□□□□□ -0.37
Ubp1Q811S7 Ccdc103-202ENSMUST00000159834 1156 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Ubp1Q811S7 Aif1-206ENSMUST00000173324 875 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Ubp1Q811S7 Pfdn6-205ENSMUST00000174426 396 ntTSL 2 BASIC12.77□□□□□ -0.37
Ubp1Q811S7 Gm29127-201ENSMUST00000188304 517 ntBASIC12.77□□□□□ -0.37
Ubp1Q811S7 Gm28693-202ENSMUST00000190758 331 ntBASIC12.77□□□□□ -0.37
Ubp1Q811S7 Gnb4-208ENSMUST00000193050 423 ntTSL 5 BASIC12.77□□□□□ -0.37
Ubp1Q811S7 9430007M09Rik-201ENSMUST00000201947 804 ntBASIC12.77□□□□□ -0.37
Ubp1Q811S7 Gm2824-203ENSMUST00000226189 1228 ntBASIC12.77□□□□□ -0.37
Ubp1Q811S7 Lamtor2-201ENSMUST00000029698 668 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Ubp1Q811S7 Tmem107-201ENSMUST00000075980 779 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Ubp1Q811S7 Mlkl-202ENSMUST00000120432 1976 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.37
Ubp1Q811S7 Ap4b1-203ENSMUST00000106823 2741 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Ubp1Q811S7 Ifi35-201ENSMUST00000010502 1362 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Ubp1Q811S7 Ube2j2-204ENSMUST00000105582 1394 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Ubp1Q811S7 Lrp1-202ENSMUST00000118455 2097 ntTSL 5 BASIC12.77□□□□□ -0.37
Ubp1Q811S7 Irs4-201ENSMUST00000067841 6294 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Ubp1Q811S7 Cnot3-201ENSMUST00000038913 2822 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Ubp1Q811S7 Fuca2-203ENSMUST00000121465 5741 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Ubp1Q811S7 Ccnc-204ENSMUST00000120679 1453 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Ubp1Q811S7 Gm38094-201ENSMUST00000195864 2978 ntBASIC12.77□□□□□ -0.37
Ubp1Q811S7 Gm10176-201ENSMUST00000159707 2264 ntBASIC12.77□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 40.6 ms