Protein–RNA interactions for Protein: Q60641

Nr1h4, Bile acid receptor, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1h4Q60641 Ntrk2-202ENSMUST00000109838 6846 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Nr1h4Q60641 Rhbdd3-203ENSMUST00000109878 1611 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Nr1h4Q60641 Lmntd1-201ENSMUST00000111706 2350 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Nr1h4Q60641 Tapbp-201ENSMUST00000025161 2894 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Nr1h4Q60641 Psmc3-202ENSMUST00000067663 1636 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Nr1h4Q60641 Zfp536-203ENSMUST00000176114 4341 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Nr1h4Q60641 Pebp1-202ENSMUST00000111973 779 ntTSL 3 BASIC12.34□□□□□ -0.43
Nr1h4Q60641 Apoc3-203ENSMUST00000121916 709 ntTSL 2 BASIC12.34□□□□□ -0.43
Nr1h4Q60641 Cdpf1-202ENSMUST00000125947 706 ntAPPRIS P1 TSL 2 BASIC12.34□□□□□ -0.43
Nr1h4Q60641 Gssos1-201ENSMUST00000142509 716 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Nr1h4Q60641 B230217C12Rik-204ENSMUST00000170806 1118 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Nr1h4Q60641 Gm21854-201ENSMUST00000179901 471 ntBASIC12.34□□□□□ -0.43
Nr1h4Q60641 Gm9522-201ENSMUST00000182394 926 ntBASIC12.34□□□□□ -0.43
Nr1h4Q60641 Pecr-201ENSMUST00000027381 1186 ntAPPRIS P2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Nr1h4Q60641 Pdzd11-202ENSMUST00000059099 1041 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Nr1h4Q60641 Mrps21-202ENSMUST00000072587 405 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Nr1h4Q60641 Carmil1-201ENSMUST00000072889 4988 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.43
Nr1h4Q60641 Fastkd3-201ENSMUST00000051784 2421 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Nr1h4Q60641 Urm1-201ENSMUST00000091142 2196 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Nr1h4Q60641 Fam160a2-202ENSMUST00000074686 3212 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
Nr1h4Q60641 A330093E20Rik-202ENSMUST00000184994 2327 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Nr1h4Q60641 Capn9-201ENSMUST00000093033 2330 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Nr1h4Q60641 Mtr-201ENSMUST00000099856 8294 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Nr1h4Q60641 Slc26a5-201ENSMUST00000030878 2962 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Nr1h4Q60641 Tmem168-201ENSMUST00000031554 4587 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Nr1h4Q60641 Bahcc1-202ENSMUST00000118987 10712 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Nr1h4Q60641 Ldha-202ENSMUST00000048209 1588 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Nr1h4Q60641 Zfp219-202ENSMUST00000166169 3017 ntAPPRIS P2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Nr1h4Q60641 AC159621.2-201ENSMUST00000223519 1326 ntBASIC12.34□□□□□ -0.43
Nr1h4Q60641 Cidec-201ENSMUST00000032416 1703 ntAPPRIS P2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Nr1h4Q60641 Zc3h6-202ENSMUST00000110320 4916 ntAPPRIS P1 TSL 2 BASIC12.34□□□□□ -0.43
Nr1h4Q60641 Adcy8-201ENSMUST00000023007 6990 ntAPPRIS P2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Nr1h4Q60641 Washc5-201ENSMUST00000022976 4033 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Nr1h4Q60641 Cds2-201ENSMUST00000089461 8073 ntTSL 1 (best) BASIC12.33□□□□□ -0.43
Nr1h4Q60641 Srr-202ENSMUST00000108447 3138 ntTSL 5 BASIC12.33□□□□□ -0.44
Nr1h4Q60641 Treh-202ENSMUST00000071219 1927 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Nr1h4Q60641 Gm42957-201ENSMUST00000137564 3624 ntAPPRIS P1 TSL 2 BASIC12.33□□□□□ -0.44
Nr1h4Q60641 Gm16793-201ENSMUST00000181322 1680 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Nr1h4Q60641 Ccdc126-202ENSMUST00000114491 2372 ntTSL 5 BASIC12.33□□□□□ -0.44
Nr1h4Q60641 Rpl9-203ENSMUST00000120094 680 ntAPPRIS P1 TSL 2 BASIC12.33□□□□□ -0.44
Nr1h4Q60641 Gm11400-201ENSMUST00000120853 1214 ntBASIC12.33□□□□□ -0.44
Nr1h4Q60641 Ube2m-208ENSMUST00000165394 1228 ntTSL 5 BASIC12.33□□□□□ -0.44
Nr1h4Q60641 2310040G24Rik-202ENSMUST00000189386 775 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Nr1h4Q60641 AC073947.2-201ENSMUST00000215888 1130 ntBASIC12.33□□□□□ -0.44
Nr1h4Q60641 AC154305.4-201ENSMUST00000224520 614 ntBASIC12.33□□□□□ -0.44
Nr1h4Q60641 Rgs10-201ENSMUST00000033133 880 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Nr1h4Q60641 Arrdc5-201ENSMUST00000097303 1054 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Nr1h4Q60641 Armc7-201ENSMUST00000035240 2260 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Nr1h4Q60641 Slitrk3-201ENSMUST00000059407 3587 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Nr1h4Q60641 Acoxl-202ENSMUST00000110344 1573 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Nr1h4Q60641 Hck-204ENSMUST00000191431 1575 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
Nr1h4Q60641 Ckm-203ENSMUST00000208710 2742 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Nr1h4Q60641 Glis3-202ENSMUST00000112612 3016 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Nr1h4Q60641 Cyth1-204ENSMUST00000106305 3179 ntAPPRIS ALT1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Nr1h4Q60641 Kiss1r-201ENSMUST00000045529 3163 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Nr1h4Q60641 AC123834.1-201ENSMUST00000225346 2043 ntBASIC12.33□□□□□ -0.44
Nr1h4Q60641 Crybg3-201ENSMUST00000044604 5231 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Nr1h4Q60641 Kcnt1-211ENSMUST00000171268 3771 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Nr1h4Q60641 1200007C13Rik-201ENSMUST00000143649 2455 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Nr1h4Q60641 Kdm2b-203ENSMUST00000086200 4999 ntAPPRIS ALT2 TSL 5 BASIC12.33□□□□□ -0.44
Nr1h4Q60641 Cers6-201ENSMUST00000028426 7038 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
Nr1h4Q60641 4930458D05Rik-201ENSMUST00000142871 3055 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Nr1h4Q60641 Nfkb2-202ENSMUST00000111881 3205 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Nr1h4Q60641 Unc45bos-201ENSMUST00000156395 1306 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Nr1h4Q60641 Zfp647-201ENSMUST00000048854 1608 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Nr1h4Q60641 Pcnt-202ENSMUST00000217838 9341 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Nr1h4Q60641 Rad9b-202ENSMUST00000117263 2371 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Nr1h4Q60641 2810430I11Rik-201ENSMUST00000154246 3416 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Nr1h4Q60641 Gja8-201ENSMUST00000062944 6940 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Nr1h4Q60641 Slc38a10-216ENSMUST00000179094 4052 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
Nr1h4Q60641 Tcf4-249ENSMUST00000202435 2427 ntTSL 5 BASIC12.32□□□□□ -0.44
Nr1h4Q60641 Armc6-201ENSMUST00000019679 2263 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Nr1h4Q60641 Stx17-201ENSMUST00000064765 1531 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
Nr1h4Q60641 Rab11fip1-201ENSMUST00000033878 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Nr1h4Q60641 Pik3r1-201ENSMUST00000035532 2923 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Nr1h4Q60641 Aff3-203ENSMUST00000095027 5857 ntAPPRIS P2 TSL 5 BASIC12.32□□□□□ -0.44
Nr1h4Q60641 Vmn2r-ps25-201ENSMUST00000202322 2321 ntBASIC12.32□□□□□ -0.44
Nr1h4Q60641 Zfp954-201ENSMUST00000056246 2042 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Nr1h4Q60641 Chrna3-201ENSMUST00000034851 4358 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Nr1h4Q60641 Gjb5-201ENSMUST00000046498 1721 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Nr1h4Q60641 Nhlh2-203ENSMUST00000198675 3943 ntAPPRIS P1 TSL 2 BASIC12.32□□□□□ -0.44
Nr1h4Q60641 Cbln3-201ENSMUST00000063871 4866 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Nr1h4Q60641 Rbm11-203ENSMUST00000114253 2699 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Nr1h4Q60641 Epb41l2-204ENSMUST00000217929 3621 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Nr1h4Q60641 Apol7e-201ENSMUST00000096358 2227 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Nr1h4Q60641 Polr3e-202ENSMUST00000106483 3001 ntAPPRIS P3 TSL 5 BASIC12.32□□□□□ -0.44
Nr1h4Q60641 Pla2g2e-202ENSMUST00000105803 381 ntTSL 5 BASIC12.32□□□□□ -0.44
Nr1h4Q60641 Selenoh-203ENSMUST00000117299 747 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Nr1h4Q60641 Vamp2-202ENSMUST00000117780 1113 ntTSL 2 BASIC12.32□□□□□ -0.44
Nr1h4Q60641 Nexmif-203ENSMUST00000118314 11476 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Nr1h4Q60641 Tbx3os1-203ENSMUST00000140101 490 ntTSL 3 BASIC12.32□□□□□ -0.44
Nr1h4Q60641 Gm11752-201ENSMUST00000143291 510 ntTSL 2 BASIC12.32□□□□□ -0.44
Nr1h4Q60641 Rpl18a-ps1-201ENSMUST00000161190 523 ntBASIC12.32□□□□□ -0.44
Nr1h4Q60641 Gm15294-202ENSMUST00000182079 366 ntAPPRIS P1 BASIC12.32□□□□□ -0.44
Nr1h4Q60641 Gm29608-201ENSMUST00000190444 463 ntBASIC12.32□□□□□ -0.44
Nr1h4Q60641 AC158987.1-201ENSMUST00000214586 961 ntTSL 5 BASIC12.32□□□□□ -0.44
Nr1h4Q60641 Myl6-205ENSMUST00000217969 608 ntTSL 2 BASIC12.32□□□□□ -0.44
Nr1h4Q60641 Exosc7-201ENSMUST00000026891 1053 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Nr1h4Q60641 Syce1l-202ENSMUST00000095173 791 ntAPPRIS P4 TSL 1 (best) BASIC12.32□□□□□ -0.44
Nr1h4Q60641 Tspan13-201ENSMUST00000020896 1932 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Retrieved 100 of 76,532 protein–RNA pairs in 27.1 ms