Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Entpd4b-204ENSMUST00000185072 3589 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Trim40Q3UWA4 Car3-201ENSMUST00000029076 1679 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Trim40Q3UWA4 Extl3-203ENSMUST00000225633 6013 ntAPPRIS P1 BASIC12.13□□□□□ -0.47
Trim40Q3UWA4 Ppargc1b-202ENSMUST00000075299 3656 ntAPPRIS P2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Trim40Q3UWA4 Wwox-203ENSMUST00000109108 1771 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Trim40Q3UWA4 Ndufaf7-201ENSMUST00000024887 2303 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Trim40Q3UWA4 Kcnb1-204ENSMUST00000207917 11153 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Trim40Q3UWA4 Syne3-203ENSMUST00000109927 5263 ntAPPRIS ALT2 TSL 5 BASIC12.12□□□□□ -0.47
Trim40Q3UWA4 Lipe-208ENSMUST00000206861 3171 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Trim40Q3UWA4 Gga3-201ENSMUST00000019135 3816 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
Trim40Q3UWA4 Arhgap30-201ENSMUST00000056449 4494 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Trim40Q3UWA4 Ywhaq-201ENSMUST00000049531 1515 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Trim40Q3UWA4 Bbof1-201ENSMUST00000081828 2187 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Trim40Q3UWA4 Gm38037-201ENSMUST00000192600 1624 ntBASIC12.12□□□□□ -0.47
Trim40Q3UWA4 Gjb5-201ENSMUST00000046498 1721 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Trim40Q3UWA4 Cyp2b10-201ENSMUST00000005477 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Trim40Q3UWA4 Mylk-201ENSMUST00000023538 7824 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Trim40Q3UWA4 Grm7-202ENSMUST00000172951 4197 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
Trim40Q3UWA4 Ptpn2-203ENSMUST00000122412 2667 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Trim40Q3UWA4 Gm37437-201ENSMUST00000194451 1937 ntBASIC12.12□□□□□ -0.47
Trim40Q3UWA4 Gm6210-201ENSMUST00000204734 1942 ntBASIC12.12□□□□□ -0.47
Trim40Q3UWA4 Pla2g2e-203ENSMUST00000105804 786 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Trim40Q3UWA4 Tagln2-201ENSMUST00000111228 716 ntAPPRIS P1 TSL 3 BASIC12.12□□□□□ -0.47
Trim40Q3UWA4 Apoo-203ENSMUST00000113897 1218 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Trim40Q3UWA4 Gm12537-201ENSMUST00000119266 1002 ntBASIC12.12□□□□□ -0.47
Trim40Q3UWA4 Gm12070-201ENSMUST00000119551 1002 ntBASIC12.12□□□□□ -0.47
Trim40Q3UWA4 Gm12671-201ENSMUST00000119978 1002 ntBASIC12.12□□□□□ -0.47
Trim40Q3UWA4 Gm13292-201ENSMUST00000120014 1000 ntBASIC12.12□□□□□ -0.47
Trim40Q3UWA4 Gm7820-201ENSMUST00000121012 1052 ntBASIC12.12□□□□□ -0.47
Trim40Q3UWA4 Gm12403-201ENSMUST00000121384 959 ntBASIC12.12□□□□□ -0.47
Trim40Q3UWA4 Mansc4-202ENSMUST00000123367 542 ntAPPRIS ALT2 TSL 2 BASIC12.12□□□□□ -0.47
Trim40Q3UWA4 Rasd2-201ENSMUST00000132133 1299 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Trim40Q3UWA4 Hpca-207ENSMUST00000139450 812 ntAPPRIS P1 TSL 3 BASIC12.12□□□□□ -0.47
Trim40Q3UWA4 Rab40c-203ENSMUST00000164982 789 ntTSL 5 BASIC12.12□□□□□ -0.47
Trim40Q3UWA4 Gm10359-201ENSMUST00000180167 1002 ntBASIC12.12□□□□□ -0.47
Trim40Q3UWA4 Gm12033-201ENSMUST00000180654 1002 ntBASIC12.12□□□□□ -0.47
Trim40Q3UWA4 Gm5559-201ENSMUST00000180755 1002 ntBASIC12.12□□□□□ -0.47
Trim40Q3UWA4 Gm10605-201ENSMUST00000182342 665 ntTSL 3 BASIC12.12□□□□□ -0.47
Trim40Q3UWA4 Gm4335-201ENSMUST00000182581 1004 ntBASIC12.12□□□□□ -0.47
Trim40Q3UWA4 Gm29585-201ENSMUST00000185270 514 ntTSL 5 BASIC12.12□□□□□ -0.47
Trim40Q3UWA4 Tssc1-207ENSMUST00000222407 489 ntTSL 3 BASIC12.12□□□□□ -0.47
Trim40Q3UWA4 Pla2g2e-201ENSMUST00000030531 854 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Trim40Q3UWA4 Tmem116-202ENSMUST00000060004 1297 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
Trim40Q3UWA4 Smim4-202ENSMUST00000064032 791 ntTSL 3 BASIC12.12□□□□□ -0.47
Trim40Q3UWA4 1190007I07Rik-201ENSMUST00000079648 716 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Trim40Q3UWA4 Pcna-ps2-201ENSMUST00000088040 1257 ntAPPRIS P1 BASIC12.12□□□□□ -0.47
Trim40Q3UWA4 Lnx1-209ENSMUST00000153543 2208 ntTSL 5 BASIC12.12□□□□□ -0.47
Trim40Q3UWA4 Utp4-201ENSMUST00000047629 2232 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Trim40Q3UWA4 Ctdspl2-201ENSMUST00000036647 5053 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
Trim40Q3UWA4 Rnf25-201ENSMUST00000027357 1479 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
Trim40Q3UWA4 Taf1a-201ENSMUST00000097043 1472 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
Trim40Q3UWA4 Chodl-203ENSMUST00000114216 1550 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Trim40Q3UWA4 Rnf43-203ENSMUST00000121782 2640 ntTSL 5 BASIC12.12□□□□□ -0.47
Trim40Q3UWA4 Rasgrp4-214ENSMUST00000205027 2717 ntTSL 5 BASIC12.12□□□□□ -0.47
Trim40Q3UWA4 Camk2b-206ENSMUST00000101585 1650 ntTSL 5 BASIC12.12□□□□□ -0.47
Trim40Q3UWA4 Cyb561d1-201ENSMUST00000065664 4058 ntAPPRIS ALT1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Trim40Q3UWA4 Fam234b-202ENSMUST00000111916 2927 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Trim40Q3UWA4 Usp3-205ENSMUST00000127569 5607 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Trim40Q3UWA4 1700001L05Rik-201ENSMUST00000100370 2270 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Trim40Q3UWA4 Zyg11a-201ENSMUST00000043793 2289 ntAPPRIS P2 TSL 5 BASIC12.12□□□□□ -0.47
Trim40Q3UWA4 Nemp1-203ENSMUST00000118728 2362 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Trim40Q3UWA4 Ccdc71-201ENSMUST00000061209 3092 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Trim40Q3UWA4 Ptgdr-201ENSMUST00000095959 3187 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Trim40Q3UWA4 Lef1-204ENSMUST00000106341 3357 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Trim40Q3UWA4 Lef1-202ENSMUST00000066849 3398 ntAPPRIS ALT1 TSL 5 BASIC12.12□□□□□ -0.47
Trim40Q3UWA4 March7-203ENSMUST00000102748 3594 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Trim40Q3UWA4 Gja5-203ENSMUST00000199597 3668 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Trim40Q3UWA4 4933430H06Rik-201ENSMUST00000200924 1343 ntBASIC12.11□□□□□ -0.47
Trim40Q3UWA4 AC154262.2-202ENSMUST00000225158 1331 ntBASIC12.11□□□□□ -0.47
Trim40Q3UWA4 Duoxa1-202ENSMUST00000110537 1506 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Trim40Q3UWA4 AC161252.3-201ENSMUST00000225465 1549 ntBASIC12.11□□□□□ -0.47
Trim40Q3UWA4 Efcab8-203ENSMUST00000175856 1703 ntAPPRIS ALT2 TSL 2 BASIC12.11□□□□□ -0.47
Trim40Q3UWA4 St6galnac6-202ENSMUST00000081879 2345 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Trim40Q3UWA4 Ubxn10-203ENSMUST00000105811 2926 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Trim40Q3UWA4 Bcl2l13-201ENSMUST00000009256 6925 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Trim40Q3UWA4 Col14a1-201ENSMUST00000023053 6457 ntAPPRIS ALT1 TSL 5 BASIC12.11□□□□□ -0.47
Trim40Q3UWA4 Mrvi1-201ENSMUST00000005751 6198 ntAPPRIS P3 TSL 1 (best) BASIC12.11□□□□□ -0.47
Trim40Q3UWA4 Foxj3-202ENSMUST00000106310 4660 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Trim40Q3UWA4 Pdzrn4-202ENSMUST00000169942 3851 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Trim40Q3UWA4 Nt5c2-202ENSMUST00000168536 3769 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Trim40Q3UWA4 Tinf2-201ENSMUST00000007733 2956 ntAPPRIS P2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Trim40Q3UWA4 Map3k4-201ENSMUST00000089058 5305 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Trim40Q3UWA4 Rita1-207ENSMUST00000177800 1668 ntAPPRIS P1 TSL 5 BASIC12.11□□□□□ -0.47
Trim40Q3UWA4 Prickle1-202ENSMUST00000109255 4144 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Trim40Q3UWA4 Gm7336-201ENSMUST00000107041 1232 ntBASIC12.11□□□□□ -0.47
Trim40Q3UWA4 Gm15851-201ENSMUST00000160564 662 ntTSL 3 BASIC12.11□□□□□ -0.47
Trim40Q3UWA4 Gm26771-201ENSMUST00000180472 1082 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Trim40Q3UWA4 1190007I07Rik-203ENSMUST00000183363 406 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Trim40Q3UWA4 Smim22-206ENSMUST00000184256 381 ntTSL 3 BASIC12.11□□□□□ -0.47
Trim40Q3UWA4 Tmem86b-204ENSMUST00000206610 522 ntTSL 3 BASIC12.11□□□□□ -0.47
Trim40Q3UWA4 AC147241.1-201ENSMUST00000222173 785 ntTSL 3 BASIC12.11□□□□□ -0.47
Trim40Q3UWA4 Gm648-201ENSMUST00000081133 1040 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Trim40Q3UWA4 Chrdl1-202ENSMUST00000074660 4096 ntAPPRIS P3 TSL 1 (best) BASIC12.11□□□□□ -0.47
Trim40Q3UWA4 Tfdp2-205ENSMUST00000179416 2408 ntAPPRIS P3 TSL 1 (best) BASIC12.11□□□□□ -0.47
Trim40Q3UWA4 Apol6-206ENSMUST00000149569 2315 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Trim40Q3UWA4 Prr18-202ENSMUST00000163887 3251 ntAPPRIS P1 TSL 3 BASIC12.11□□□□□ -0.47
Trim40Q3UWA4 Arid4a-201ENSMUST00000046305 4998 ntAPPRIS P1 TSL 5 BASIC12.11□□□□□ -0.47
Trim40Q3UWA4 Gm5320-201ENSMUST00000207163 1519 ntBASIC12.11□□□□□ -0.47
Trim40Q3UWA4 Ccdc114-201ENSMUST00000038720 2460 ntAPPRIS P2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Trim40Q3UWA4 Tanc2-202ENSMUST00000100330 11855 ntAPPRIS P1 TSL 5 BASIC12.11□□□□□ -0.47
Retrieved 100 of 76,532 protein–RNA pairs in 78.7 ms