Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Dcst1-201ENSMUST00000070820 2342 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Upf3bQ3ULL6 Ccr7-201ENSMUST00000103134 1978 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Upf3bQ3ULL6 Slc7a6-201ENSMUST00000034378 3750 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Upf3bQ3ULL6 Epb41l5-201ENSMUST00000027632 2523 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Upf3bQ3ULL6 4931440F15Rik-201ENSMUST00000104962 3274 ntAPPRIS P1 BASIC13.84□□□□□ -0.19
Upf3bQ3ULL6 Naa60-209ENSMUST00000175809 279 ntTSL 5 BASIC13.84□□□□□ -0.19
Upf3bQ3ULL6 1700094J05Rik-202ENSMUST00000190491 997 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Upf3bQ3ULL6 Gm40466-201ENSMUST00000212174 422 ntBASIC13.84□□□□□ -0.19
Upf3bQ3ULL6 Gm5186-201ENSMUST00000218781 920 ntBASIC13.84□□□□□ -0.19
Upf3bQ3ULL6 Lamtor2-201ENSMUST00000029698 668 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Upf3bQ3ULL6 Gm9955-201ENSMUST00000067987 309 ntAPPRIS P1 BASIC13.84□□□□□ -0.19
Upf3bQ3ULL6 Rpl10-202ENSMUST00000074085 855 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Upf3bQ3ULL6 Ggnbp1-203ENSMUST00000133257 5012 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
Upf3bQ3ULL6 Chia1-201ENSMUST00000079132 1681 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Upf3bQ3ULL6 Npc1-201ENSMUST00000025279 5224 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Upf3bQ3ULL6 Fam49b-201ENSMUST00000063838 3797 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Upf3bQ3ULL6 H2-DMb2-201ENSMUST00000041982 1347 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Upf3bQ3ULL6 Tspan12-201ENSMUST00000031678 2490 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Upf3bQ3ULL6 Shank2-203ENSMUST00000105902 8988 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
Upf3bQ3ULL6 Ahdc1-203ENSMUST00000105915 6341 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Upf3bQ3ULL6 Pcdh8-201ENSMUST00000039568 4000 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
Upf3bQ3ULL6 Podn-201ENSMUST00000044248 2885 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
Upf3bQ3ULL6 Myc-205ENSMUST00000161976 2338 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Upf3bQ3ULL6 Myc-201ENSMUST00000022971 2338 ntAPPRIS ALT1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Upf3bQ3ULL6 Zyx-201ENSMUST00000070635 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
Upf3bQ3ULL6 Plekhg2-202ENSMUST00000119990 4880 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
Upf3bQ3ULL6 Abo-201ENSMUST00000102900 1779 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.19
Upf3bQ3ULL6 Parp10-202ENSMUST00000165738 3367 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
Upf3bQ3ULL6 Gzf1-201ENSMUST00000028928 4232 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
Upf3bQ3ULL6 Dct-201ENSMUST00000022725 2202 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Upf3bQ3ULL6 Slc6a18-208ENSMUST00000222029 2005 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
Upf3bQ3ULL6 Trp53-202ENSMUST00000108657 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
Upf3bQ3ULL6 Sirt2-202ENSMUST00000122915 1828 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
Upf3bQ3ULL6 Avpr2-201ENSMUST00000033765 1812 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Upf3bQ3ULL6 Phactr3-205ENSMUST00000108917 4858 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Upf3bQ3ULL6 Gm2885-201ENSMUST00000181895 1442 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Upf3bQ3ULL6 Evc2-201ENSMUST00000056365 4091 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Upf3bQ3ULL6 Esr2-201ENSMUST00000076634 3288 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Upf3bQ3ULL6 Egr3-204ENSMUST00000225200 3940 ntAPPRIS P2 BASIC13.83□□□□□ -0.2
Upf3bQ3ULL6 Ptch2-201ENSMUST00000030443 4382 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Upf3bQ3ULL6 Sirt3-201ENSMUST00000026559 1461 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.2
Upf3bQ3ULL6 Cyth1-204ENSMUST00000106305 3179 ntAPPRIS ALT1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Upf3bQ3ULL6 Psme2b-201ENSMUST00000104958 837 ntAPPRIS P1 BASIC13.83□□□□□ -0.2
Upf3bQ3ULL6 A430005L14Rik-202ENSMUST00000105645 977 ntTSL 3 BASIC13.83□□□□□ -0.2
Upf3bQ3ULL6 Timm10-202ENSMUST00000111631 564 ntAPPRIS P1 TSL 3 BASIC13.83□□□□□ -0.2
Upf3bQ3ULL6 1700016P03Rik-201ENSMUST00000134252 863 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Upf3bQ3ULL6 9130604C24Rik-201ENSMUST00000197965 956 ntBASIC13.83□□□□□ -0.2
Upf3bQ3ULL6 Tgif2-ps1-201ENSMUST00000203590 713 ntBASIC13.83□□□□□ -0.2
Upf3bQ3ULL6 Pfdn1-201ENSMUST00000025204 1077 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Upf3bQ3ULL6 Ier3-201ENSMUST00000003635 1131 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Upf3bQ3ULL6 Pdzd11-202ENSMUST00000059099 1041 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Upf3bQ3ULL6 n-R5s77-201ENSMUST00000083757 119 ntBASIC13.83□□□□□ -0.2
Upf3bQ3ULL6 Tpd52-204ENSMUST00000094381 1074 ntTSL 3 BASIC13.83□□□□□ -0.2
Upf3bQ3ULL6 Tmc6-201ENSMUST00000026659 2865 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Upf3bQ3ULL6 Dcun1d3-201ENSMUST00000059851 5985 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Upf3bQ3ULL6 Dctn2-201ENSMUST00000026479 1784 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Upf3bQ3ULL6 Rnps1-201ENSMUST00000088512 1798 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Upf3bQ3ULL6 Uspl1-205ENSMUST00000121416 3792 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
Upf3bQ3ULL6 Snx13-201ENSMUST00000048519 6231 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Upf3bQ3ULL6 Auts2-208ENSMUST00000161374 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
Upf3bQ3ULL6 Naaladl1-201ENSMUST00000044451 2491 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
Upf3bQ3ULL6 Tfap2c-202ENSMUST00000099058 2985 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Upf3bQ3ULL6 Pou5f2-201ENSMUST00000175955 1394 ntAPPRIS P1 BASIC13.83□□□□□ -0.2
Upf3bQ3ULL6 Mettl17-201ENSMUST00000047899 1623 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Upf3bQ3ULL6 Grip1-202ENSMUST00000077871 3720 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Upf3bQ3ULL6 Gart-201ENSMUST00000023684 3518 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Upf3bQ3ULL6 Kif13a-201ENSMUST00000056978 6866 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Upf3bQ3ULL6 Hectd2-208ENSMUST00000169036 3842 ntAPPRIS ALT1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Upf3bQ3ULL6 Scarf1-201ENSMUST00000042808 2887 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Upf3bQ3ULL6 Chfr-202ENSMUST00000112519 3159 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Upf3bQ3ULL6 Gm10305-201ENSMUST00000195331 2475 ntBASIC13.82□□□□□ -0.2
Upf3bQ3ULL6 Eif4g3-204ENSMUST00000105830 3252 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Upf3bQ3ULL6 Lcn5-203ENSMUST00000100313 660 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Upf3bQ3ULL6 Timm10b-202ENSMUST00000106780 671 ntAPPRIS P2 TSL 2 BASIC13.82□□□□□ -0.2
Upf3bQ3ULL6 Snap25-202ENSMUST00000110098 1014 ntAPPRIS ALT1 TSL 3 BASIC13.82□□□□□ -0.2
Upf3bQ3ULL6 Emd-204ENSMUST00000119197 768 ntTSL 3 BASIC13.82□□□□□ -0.2
Upf3bQ3ULL6 Gm1335-201ENSMUST00000121653 386 ntBASIC13.82□□□□□ -0.2
Upf3bQ3ULL6 BC023719-201ENSMUST00000174728 978 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Upf3bQ3ULL6 Gm32926-201ENSMUST00000214043 681 ntTSL 3 BASIC13.82□□□□□ -0.2
Upf3bQ3ULL6 AC159263.1-201ENSMUST00000220746 482 ntTSL 5 BASIC13.82□□□□□ -0.2
Upf3bQ3ULL6 Cdk7-205ENSMUST00000225990 1159 ntBASIC13.82□□□□□ -0.2
Upf3bQ3ULL6 Utp23-201ENSMUST00000059599 740 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Upf3bQ3ULL6 Fam241b-202ENSMUST00000064050 1096 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
Upf3bQ3ULL6 Gm10268-201ENSMUST00000085340 555 ntBASIC13.82□□□□□ -0.2
Upf3bQ3ULL6 Cbx6-202ENSMUST00000109625 3056 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Upf3bQ3ULL6 Neurl3-201ENSMUST00000056946 2598 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Upf3bQ3ULL6 Gm44851-201ENSMUST00000205735 2309 ntBASIC13.82□□□□□ -0.2
Upf3bQ3ULL6 Gatad2a-206ENSMUST00000212478 3622 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
Upf3bQ3ULL6 Pkp1-201ENSMUST00000027667 4669 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Upf3bQ3ULL6 Fetub-201ENSMUST00000023587 1573 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Upf3bQ3ULL6 Sdccag8-202ENSMUST00000056773 1551 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Upf3bQ3ULL6 Mark2-215ENSMUST00000168872 2124 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
Upf3bQ3ULL6 Mrpl50-201ENSMUST00000057829 2114 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Upf3bQ3ULL6 4933417C20Rik-201ENSMUST00000193962 1874 ntBASIC13.82□□□□□ -0.2
Upf3bQ3ULL6 Igsf23-204ENSMUST00000208974 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Upf3bQ3ULL6 Atp6ap1-202ENSMUST00000114171 2157 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Upf3bQ3ULL6 Wasl-201ENSMUST00000031695 4352 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Upf3bQ3ULL6 Phrf1-201ENSMUST00000106027 5248 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
Upf3bQ3ULL6 Tmem159-202ENSMUST00000118737 1395 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
Upf3bQ3ULL6 Ywhab-201ENSMUST00000018470 3013 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Retrieved 100 of 76,532 protein–RNA pairs in 47.6 ms