Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Fam173a-201ENSMUST00000072735 800 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Limch1Q3UH68 Coro6-203ENSMUST00000079770 1298 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Limch1Q3UH68 Gm39377-201ENSMUST00000214587 2533 ntTSL 5 BASIC15.23■□□□□ 0.03
Limch1Q3UH68 Trim26-202ENSMUST00000123715 1406 ntTSL 5 BASIC15.23■□□□□ 0.03
Limch1Q3UH68 Sostdc1-201ENSMUST00000041407 1781 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Limch1Q3UH68 Gcdh-202ENSMUST00000109745 2114 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
Limch1Q3UH68 Cdc45-201ENSMUST00000000028 2143 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
Limch1Q3UH68 Epb41l5-208ENSMUST00000191046 6870 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Limch1Q3UH68 Gzf1-201ENSMUST00000028928 4232 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Limch1Q3UH68 Xrcc3-201ENSMUST00000021715 2422 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Limch1Q3UH68 Agt-201ENSMUST00000063278 1891 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Limch1Q3UH68 Kcnk2-202ENSMUST00000110920 3572 ntAPPRIS ALT1 TSL 5 BASIC15.23■□□□□ 0.03
Limch1Q3UH68 Grip1-202ENSMUST00000077871 3720 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Limch1Q3UH68 Slc8a2-201ENSMUST00000168693 4171 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Limch1Q3UH68 Nup88-203ENSMUST00000108531 2453 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Limch1Q3UH68 Etl4-201ENSMUST00000045555 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Limch1Q3UH68 Ralgds-202ENSMUST00000100241 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Limch1Q3UH68 Wipf3-201ENSMUST00000126637 4414 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
Limch1Q3UH68 Draxin-201ENSMUST00000030862 5200 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Limch1Q3UH68 Mixl1-201ENSMUST00000027778 2294 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Limch1Q3UH68 Mecom-206ENSMUST00000172694 4381 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Limch1Q3UH68 Trp53i11-202ENSMUST00000111266 2703 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Limch1Q3UH68 Tcf12-201ENSMUST00000034755 4621 ntAPPRIS ALT1 TSL 5 BASIC15.22■□□□□ 0.03
Limch1Q3UH68 Spatc1l-202ENSMUST00000105414 1060 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Limch1Q3UH68 Fgf18-202ENSMUST00000109363 991 ntTSL 3 BASIC15.22■□□□□ 0.03
Limch1Q3UH68 Gm10156-201ENSMUST00000122364 462 ntBASIC15.22■□□□□ 0.03
Limch1Q3UH68 Sct-204ENSMUST00000211667 506 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
Limch1Q3UH68 AC122305.4-201ENSMUST00000216159 1206 ntBASIC15.22■□□□□ 0.03
Limch1Q3UH68 Bphl-201ENSMUST00000040656 1253 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Limch1Q3UH68 Il27-201ENSMUST00000058429 1021 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Limch1Q3UH68 Dmrtc1c2-201ENSMUST00000087896 1255 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Limch1Q3UH68 Kctd20-202ENSMUST00000117672 2219 ntTSL 5 BASIC15.22■□□□□ 0.03
Limch1Q3UH68 Gm16010-202ENSMUST00000145410 4427 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Limch1Q3UH68 Dhtkd1-202ENSMUST00000095147 5480 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
Limch1Q3UH68 Lmf2-201ENSMUST00000023283 2906 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Limch1Q3UH68 Fosb-207ENSMUST00000208505 3523 ntTSL 5 BASIC15.22■□□□□ 0.03
Limch1Q3UH68 Ralgapb-203ENSMUST00000109486 8383 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Limch1Q3UH68 Nudt21-201ENSMUST00000034204 5010 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Limch1Q3UH68 Tmem254a-204ENSMUST00000185006 2147 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Limch1Q3UH68 Mest-211ENSMUST00000163949 2561 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
Limch1Q3UH68 Scarf1-201ENSMUST00000042808 2887 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Limch1Q3UH68 Ankfn1-201ENSMUST00000050983 2665 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Limch1Q3UH68 Mansc1-201ENSMUST00000047443 2376 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Limch1Q3UH68 Pphln1-202ENSMUST00000068457 3816 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Limch1Q3UH68 Gm43796-201ENSMUST00000202853 2012 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
Limch1Q3UH68 Cyth1-204ENSMUST00000106305 3179 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Limch1Q3UH68 Dus2-201ENSMUST00000034375 1860 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Limch1Q3UH68 Gcom1-201ENSMUST00000163998 1726 ntAPPRIS P5 TSL 5 BASIC15.21■□□□□ 0.03
Limch1Q3UH68 Nphp4-201ENSMUST00000056567 4583 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Limch1Q3UH68 Trim27-205ENSMUST00000221464 1400 ntTSL 5 BASIC15.21■□□□□ 0.03
Limch1Q3UH68 Nfatc4-201ENSMUST00000024179 3267 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
Limch1Q3UH68 Myh3-201ENSMUST00000007301 5992 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
Limch1Q3UH68 Arpc3-203ENSMUST00000111713 708 ntTSL 3 BASIC15.21■□□□□ 0.03
Limch1Q3UH68 Litaf-202ENSMUST00000117360 763 ntAPPRIS P1 TSL 3 BASIC15.21■□□□□ 0.03
Limch1Q3UH68 Gm8213-201ENSMUST00000118191 441 ntBASIC15.21■□□□□ 0.03
Limch1Q3UH68 1700069L16Rik-203ENSMUST00000162388 706 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Limch1Q3UH68 Tspan17-208ENSMUST00000163915 459 ntTSL 5 BASIC15.21■□□□□ 0.03
Limch1Q3UH68 Glo1-202ENSMUST00000167624 895 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
Limch1Q3UH68 Aif1-206ENSMUST00000173324 875 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Limch1Q3UH68 Gm27331-201ENSMUST00000183705 60 ntBASIC15.21■□□□□ 0.03
Limch1Q3UH68 Ssr2-202ENSMUST00000192495 620 ntTSL 5 BASIC15.21■□□□□ 0.03
Limch1Q3UH68 Trmt112-ps1-201ENSMUST00000202320 375 ntBASIC15.21■□□□□ 0.03
Limch1Q3UH68 Gm20083-202ENSMUST00000206663 1008 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Limch1Q3UH68 Gm18054-201ENSMUST00000207539 555 ntBASIC15.21■□□□□ 0.03
Limch1Q3UH68 Gm29154-230ENSMUST00000215044 1165 ntTSL 5 BASIC15.21■□□□□ 0.03
Limch1Q3UH68 Gas7-201ENSMUST00000041611 2968 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Limch1Q3UH68 Gm13199-201ENSMUST00000071016 747 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Limch1Q3UH68 Fxyd1-202ENSMUST00000071697 522 ntAPPRIS P1 TSL 3 BASIC15.21■□□□□ 0.03
Limch1Q3UH68 Trpm4-209ENSMUST00000211743 3673 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Limch1Q3UH68 Mlkl-202ENSMUST00000120432 1976 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
Limch1Q3UH68 Klhdc7b-201ENSMUST00000166926 1818 ntAPPRIS P2 BASIC15.21■□□□□ 0.03
Limch1Q3UH68 Rnf220-202ENSMUST00000094853 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Limch1Q3UH68 Abhd6-202ENSMUST00000166497 2226 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Limch1Q3UH68 Gm26519-201ENSMUST00000181193 2249 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Limch1Q3UH68 Sugp2-201ENSMUST00000093458 3874 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Limch1Q3UH68 D430019H16Rik-201ENSMUST00000178224 5786 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Limch1Q3UH68 Stk25-201ENSMUST00000027498 4249 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Limch1Q3UH68 Uspl1-205ENSMUST00000121416 3792 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.02
Limch1Q3UH68 Fbxl5-211ENSMUST00000196483 2814 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Limch1Q3UH68 Whamm-203ENSMUST00000209044 1879 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Limch1Q3UH68 Syt12-201ENSMUST00000059295 3581 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Limch1Q3UH68 Rbm14-201ENSMUST00000006625 3165 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Limch1Q3UH68 Irak1-204ENSMUST00000114352 3825 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
Limch1Q3UH68 Ptpn7-203ENSMUST00000187985 1990 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
Limch1Q3UH68 Adamts7-207ENSMUST00000147250 4833 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Limch1Q3UH68 Mtmr2-201ENSMUST00000034396 3788 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Limch1Q3UH68 Ints3-202ENSMUST00000071488 4038 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Limch1Q3UH68 Gm36445-201ENSMUST00000209344 1432 ntTSL 5 BASIC15.2■□□□□ 0.02
Limch1Q3UH68 Zmynd15-201ENSMUST00000039093 2804 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Limch1Q3UH68 Snap25-202ENSMUST00000110098 1014 ntAPPRIS ALT1 TSL 3 BASIC15.2■□□□□ 0.02
Limch1Q3UH68 Gm42420-201ENSMUST00000126621 634 ntAPPRIS P1 TSL 3 BASIC15.2■□□□□ 0.02
Limch1Q3UH68 Gm26542-201ENSMUST00000180443 1235 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Limch1Q3UH68 1700113H08Rik-202ENSMUST00000189456 974 ntTSL 5 BASIC15.2■□□□□ 0.02
Limch1Q3UH68 2610300A13Rik-201ENSMUST00000192930 503 ntBASIC15.2■□□□□ 0.02
Limch1Q3UH68 C030018K13Rik-202ENSMUST00000196829 712 ntTSL 3 BASIC15.2■□□□□ 0.02
Limch1Q3UH68 Gm29705-201ENSMUST00000212598 474 ntBASIC15.2■□□□□ 0.02
Limch1Q3UH68 AC153937.1-201ENSMUST00000218734 412 ntBASIC15.2■□□□□ 0.02
Limch1Q3UH68 Gm9257-201ENSMUST00000221254 232 ntBASIC15.2■□□□□ 0.02
Limch1Q3UH68 AC155237.1-201ENSMUST00000226196 1279 ntBASIC15.2■□□□□ 0.02
Limch1Q3UH68 Klc2-204ENSMUST00000116563 3169 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 45.7 ms