Protein–RNA interactions for Protein: Q06831

Sox4, Transcription factor SOX-4, mousemouse

Predictions only

Length 440 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox4Q06831 D230025D16Rik-201ENSMUST00000034361 2916 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Sox4Q06831 5330406M23Rik-201ENSMUST00000195672 2094 ntBASIC12.72□□□□□ -0.37
Sox4Q06831 Chst3-201ENSMUST00000068690 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Sox4Q06831 Nlrp6-204ENSMUST00000184560 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Sox4Q06831 Hk2-204ENSMUST00000170833 2792 ntTSL 5 BASIC12.72□□□□□ -0.37
Sox4Q06831 Polrmt-202ENSMUST00000159016 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Sox4Q06831 Cacna1g-202ENSMUST00000100561 8125 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
Sox4Q06831 Naga-201ENSMUST00000023088 1913 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Sox4Q06831 Klhl30-201ENSMUST00000027533 3089 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Sox4Q06831 Nr2c2-201ENSMUST00000113460 7647 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
Sox4Q06831 Golim4-202ENSMUST00000117242 4551 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Sox4Q06831 Pgghg-204ENSMUST00000164580 3001 ntAPPRIS ALT2 TSL 5 BASIC12.72□□□□□ -0.37
Sox4Q06831 Galnt6-202ENSMUST00000159715 3796 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Sox4Q06831 Zfp541-202ENSMUST00000209369 4879 ntAPPRIS P2 TSL 5 BASIC12.72□□□□□ -0.37
Sox4Q06831 AC238940.1-201ENSMUST00000225106 1858 ntBASIC12.72□□□□□ -0.37
Sox4Q06831 Gm43666-201ENSMUST00000197116 2989 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Sox4Q06831 Gnaz-202ENSMUST00000159991 3331 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Sox4Q06831 Gpr12-203ENSMUST00000197431 1455 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Sox4Q06831 Zfp28-201ENSMUST00000081022 4447 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Sox4Q06831 Pole3-201ENSMUST00000030091 1805 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Sox4Q06831 Mfsd4a-205ENSMUST00000144548 3288 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Sox4Q06831 Zfp429-202ENSMUST00000181071 2117 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Sox4Q06831 Col9a3-201ENSMUST00000103059 2846 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Sox4Q06831 Slc4a1ap-209ENSMUST00000202214 2806 ntAPPRIS P3 TSL 5 BASIC12.71□□□□□ -0.37
Sox4Q06831 Gucd1-201ENSMUST00000039796 3500 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Sox4Q06831 Spib-201ENSMUST00000035323 2788 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Sox4Q06831 Dhx58-201ENSMUST00000017974 2412 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Sox4Q06831 Zfp236-201ENSMUST00000171071 9626 ntAPPRIS P2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Sox4Q06831 Cbx6-202ENSMUST00000109625 3056 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Sox4Q06831 Copb2-201ENSMUST00000035033 3050 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Sox4Q06831 Mgat1-202ENSMUST00000101293 2729 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Sox4Q06831 Kdm5c-203ENSMUST00000112588 6449 ntAPPRIS P2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Sox4Q06831 Mpp3-202ENSMUST00000100400 2997 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Sox4Q06831 Zscan29-205ENSMUST00000163766 3611 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.37
Sox4Q06831 Noto-201ENSMUST00000089578 1602 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Sox4Q06831 Bpi-203ENSMUST00000109500 1911 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.37
Sox4Q06831 Gm34006-202ENSMUST00000216467 1918 ntTSL 2 BASIC12.71□□□□□ -0.37
Sox4Q06831 Qdpr-202ENSMUST00000117425 1231 ntTSL 3 BASIC12.71□□□□□ -0.37
Sox4Q06831 4933427G23Rik-202ENSMUST00000126393 544 ntBASIC12.71□□□□□ -0.37
Sox4Q06831 Gm11851-201ENSMUST00000132219 692 ntTSL 5 BASIC12.71□□□□□ -0.37
Sox4Q06831 Gm15420-201ENSMUST00000133274 382 ntTSL 3 BASIC12.71□□□□□ -0.37
Sox4Q06831 Gm25261-201ENSMUST00000157416 134 ntBASIC12.71□□□□□ -0.37
Sox4Q06831 Spdye4b-202ENSMUST00000159781 1128 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Sox4Q06831 Gm22121-201ENSMUST00000175148 54 ntBASIC12.71□□□□□ -0.37
Sox4Q06831 Msra-205ENSMUST00000210428 1180 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Sox4Q06831 AC159263.1-201ENSMUST00000220746 482 ntTSL 5 BASIC12.71□□□□□ -0.37
Sox4Q06831 Gm4935-201ENSMUST00000221316 1198 ntBASIC12.71□□□□□ -0.37
Sox4Q06831 Bcdin3d-201ENSMUST00000040313 1271 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Sox4Q06831 Vmn1r213-201ENSMUST00000076897 1155 ntAPPRIS P2 BASIC12.71□□□□□ -0.37
Sox4Q06831 Gm10544-201ENSMUST00000180516 2239 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Sox4Q06831 Pex12-207ENSMUST00000176518 2501 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Sox4Q06831 Asic3-202ENSMUST00000196296 1593 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.37
Sox4Q06831 Napsa-201ENSMUST00000002274 1560 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Sox4Q06831 Spred3-201ENSMUST00000048923 4056 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Sox4Q06831 C530008M17Rik-202ENSMUST00000120639 6826 ntAPPRIS P2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Sox4Q06831 C530008M17Rik-211ENSMUST00000163347 6835 ntAPPRIS P2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Sox4Q06831 Hspb7-201ENSMUST00000102486 2769 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Sox4Q06831 Tnpo2-202ENSMUST00000166592 4884 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.38
Sox4Q06831 Trp53-202ENSMUST00000108657 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.38
Sox4Q06831 Necab1-202ENSMUST00000108273 2135 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Sox4Q06831 Misp-201ENSMUST00000046833 2414 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Sox4Q06831 G2e3-201ENSMUST00000054308 6803 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.38
Sox4Q06831 Fnbp1-206ENSMUST00000113555 1776 ntTSL 5 BASIC12.71□□□□□ -0.38
Sox4Q06831 Ranbp17-202ENSMUST00000102815 5001 ntAPPRIS P2 TSL 1 (best) BASIC12.71□□□□□ -0.38
Sox4Q06831 Stox2-201ENSMUST00000079195 10467 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Sox4Q06831 Tars2-202ENSMUST00000074339 2313 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.38
Sox4Q06831 Arid1b-202ENSMUST00000115797 11325 ntAPPRIS P2 TSL 5 BASIC12.71□□□□□ -0.38
Sox4Q06831 Atg16l1-203ENSMUST00000113190 3102 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
Sox4Q06831 Cnot3-201ENSMUST00000038913 2822 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Sox4Q06831 Trappc2l-201ENSMUST00000015157 1659 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Sox4Q06831 Olfr649-202ENSMUST00000106859 1382 ntAPPRIS P1 TSL 3 BASIC12.7□□□□□ -0.38
Sox4Q06831 Vax2os-203ENSMUST00000155159 4063 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Sox4Q06831 Ap2a1-203ENSMUST00000166972 3449 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Sox4Q06831 Fbxo44-208ENSMUST00000167160 1572 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
Sox4Q06831 Gm4780-202ENSMUST00000215200 2644 ntBASIC12.7□□□□□ -0.38
Sox4Q06831 Mtnr1a-201ENSMUST00000067984 1576 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Sox4Q06831 Kifc3-202ENSMUST00000169353 2898 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Sox4Q06831 Gm28551-201ENSMUST00000144660 3142 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Sox4Q06831 Lztr1-201ENSMUST00000023444 3112 ntAPPRIS P2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Sox4Q06831 Hmx2-201ENSMUST00000051997 3102 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Sox4Q06831 Gm36995-201ENSMUST00000126170 5727 ntTSL 2 BASIC12.7□□□□□ -0.38
Sox4Q06831 Gm22018-201ENSMUST00000104357 131 ntBASIC12.7□□□□□ -0.38
Sox4Q06831 Snord83b-201ENSMUST00000104546 94 ntBASIC12.7□□□□□ -0.38
Sox4Q06831 Pkig-203ENSMUST00000109400 1059 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Sox4Q06831 Gm13392-201ENSMUST00000117708 150 ntBASIC12.7□□□□□ -0.38
Sox4Q06831 Rpl19-ps12-201ENSMUST00000121251 591 ntBASIC12.7□□□□□ -0.38
Sox4Q06831 Ict1os-201ENSMUST00000125653 1052 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Sox4Q06831 Gm12347-201ENSMUST00000127883 470 ntTSL 3 BASIC12.7□□□□□ -0.38
Sox4Q06831 Gm17420-201ENSMUST00000164753 153 ntBASIC12.7□□□□□ -0.38
Sox4Q06831 Gm27572-201ENSMUST00000183702 255 ntBASIC12.7□□□□□ -0.38
Sox4Q06831 Gm26728-201ENSMUST00000185268 595 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Sox4Q06831 Pced1c-ps-201ENSMUST00000187740 751 ntBASIC12.7□□□□□ -0.38
Sox4Q06831 Gm37008-201ENSMUST00000195712 319 ntBASIC12.7□□□□□ -0.38
Sox4Q06831 Gm32025-201ENSMUST00000217960 307 ntBASIC12.7□□□□□ -0.38
Sox4Q06831 Gm18041-201ENSMUST00000218210 618 ntBASIC12.7□□□□□ -0.38
Sox4Q06831 Otos-201ENSMUST00000053144 704 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Sox4Q06831 Mdk-203ENSMUST00000090602 714 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
Sox4Q06831 Neurog3-201ENSMUST00000050103 1540 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Sox4Q06831 H2-T22-201ENSMUST00000058801 1534 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Sox4Q06831 Suv39h1-201ENSMUST00000115636 2707 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Retrieved 100 of 76,532 protein–RNA pairs in 62.3 ms