Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Tmem17-201ENSMUST00000059319 1568 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col6a1Q04857 Hdac5-203ENSMUST00000107151 4852 ntTSL 5 BASIC14.29□□□□□ -0.12
Col6a1Q04857 Slc25a54-201ENSMUST00000029478 1673 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col6a1Q04857 Nfasc-201ENSMUST00000043189 5072 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col6a1Q04857 Gm13016-201ENSMUST00000126252 1720 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Col6a1Q04857 Vapb-201ENSMUST00000067530 7029 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col6a1Q04857 Gga3-202ENSMUST00000106508 3582 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col6a1Q04857 Il11ra1-203ENSMUST00000108041 1953 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col6a1Q04857 Slc35c2-202ENSMUST00000109298 1991 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col6a1Q04857 Gm13305-201ENSMUST00000098121 1953 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col6a1Q04857 Pdcd6ip-201ENSMUST00000035086 5951 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col6a1Q04857 Gm13848-201ENSMUST00000130777 2047 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Col6a1Q04857 Pfkfb3-212ENSMUST00000170196 2163 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Col6a1Q04857 Prr33-201ENSMUST00000054910 2251 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Col6a1Q04857 Samd11-202ENSMUST00000217934 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col6a1Q04857 Adgrg3-201ENSMUST00000051259 2439 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col6a1Q04857 Tcf3-205ENSMUST00000105341 2451 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
Col6a1Q04857 Parp16-202ENSMUST00000213396 2518 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col6a1Q04857 Hk3-208ENSMUST00000153665 2945 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Col6a1Q04857 B3gnt3-201ENSMUST00000034260 3055 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col6a1Q04857 Ptger3-201ENSMUST00000041175 3148 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col6a1Q04857 Ppp3cb-205ENSMUST00000161445 3298 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col6a1Q04857 Grm6-201ENSMUST00000000631 4291 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
Col6a1Q04857 Cplx2-201ENSMUST00000026985 4928 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
Col6a1Q04857 Rap1gap2-202ENSMUST00000102521 6565 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
Col6a1Q04857 Skap1-202ENSMUST00000100519 1100 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Col6a1Q04857 Kcnq2-208ENSMUST00000103051 4200 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
Col6a1Q04857 Prr29-202ENSMUST00000106816 771 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col6a1Q04857 Glipr2-202ENSMUST00000107855 1816 ntTSL 2 BASIC14.28□□□□□ -0.12
Col6a1Q04857 Mrpl55-203ENSMUST00000108785 792 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col6a1Q04857 Prdx2-203ENSMUST00000109734 1612 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
Col6a1Q04857 Gucy1a2-201ENSMUST00000115733 2243 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
Col6a1Q04857 Gm11531-201ENSMUST00000117614 555 ntBASIC14.28□□□□□ -0.12
Col6a1Q04857 Gm15897-201ENSMUST00000117770 1486 ntBASIC14.28□□□□□ -0.12
Col6a1Q04857 Gm11930-201ENSMUST00000117788 190 ntBASIC14.28□□□□□ -0.12
Col6a1Q04857 Nipa2-204ENSMUST00000119201 3925 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col6a1Q04857 Fam160a2-204ENSMUST00000122327 3521 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col6a1Q04857 Smg5-201ENSMUST00000001451 4448 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col6a1Q04857 Lpar2-202ENSMUST00000164890 5800 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col6a1Q04857 Gm17518-201ENSMUST00000181232 1346 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Col6a1Q04857 Kansl3-205ENSMUST00000186470 2801 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Col6a1Q04857 Gm28450-201ENSMUST00000187349 638 ntBASIC14.28□□□□□ -0.12
Col6a1Q04857 Gm43298-201ENSMUST00000200887 866 ntTSL 3 BASIC14.28□□□□□ -0.12
Col6a1Q04857 Gm44100-201ENSMUST00000204329 436 ntBASIC14.28□□□□□ -0.12
Col6a1Q04857 Gm29961-201ENSMUST00000214692 644 ntTSL 5 BASIC14.28□□□□□ -0.12
Col6a1Q04857 AC167669.2-201ENSMUST00000224417 1620 ntBASIC14.28□□□□□ -0.12
Col6a1Q04857 Slc4a5-201ENSMUST00000039212 5123 ntAPPRIS P2 TSL 5 BASIC14.28□□□□□ -0.12
Col6a1Q04857 Elovl3-201ENSMUST00000043739 1494 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col6a1Q04857 Atrip-201ENSMUST00000045011 2572 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col6a1Q04857 Agrp-201ENSMUST00000005849 661 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col6a1Q04857 Yipf1-201ENSMUST00000075693 1321 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col6a1Q04857 Tnpo2-201ENSMUST00000093360 4863 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col6a1Q04857 Srrm1-202ENSMUST00000084846 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col6a1Q04857 D930019O06Rik-201ENSMUST00000181841 3663 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Col6a1Q04857 Il12rb1-205ENSMUST00000212657 2741 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
Col6a1Q04857 Serpinb2-201ENSMUST00000009356 1970 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Col6a1Q04857 Pnrc2-201ENSMUST00000030436 1919 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Col6a1Q04857 E230013L22Rik-201ENSMUST00000180408 1856 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Col6a1Q04857 Exosc2-201ENSMUST00000038474 1686 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Col6a1Q04857 Slc22a13b-ps-201ENSMUST00000173185 1458 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Col6a1Q04857 Kansl2-ps-201ENSMUST00000181818 1461 ntBASIC14.27□□□□□ -0.12
Col6a1Q04857 Chrnd-202ENSMUST00000186373 2949 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Col6a1Q04857 AC096628.2-201ENSMUST00000225443 1413 ntBASIC14.27□□□□□ -0.12
Col6a1Q04857 Gmppb-201ENSMUST00000047947 1429 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Col6a1Q04857 Kcnh7-202ENSMUST00000112452 2849 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Col6a1Q04857 Ntrk2-208ENSMUST00000225583 2719 ntBASIC14.27□□□□□ -0.12
Col6a1Q04857 Nudt18-201ENSMUST00000089049 3926 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Col6a1Q04857 Gm25214-201ENSMUST00000104573 129 ntBASIC14.27□□□□□ -0.13
Col6a1Q04857 n-R5s14-201ENSMUST00000122688 107 ntBASIC14.27□□□□□ -0.13
Col6a1Q04857 Gm2445-201ENSMUST00000182798 989 ntBASIC14.27□□□□□ -0.13
Col6a1Q04857 Mocs2-215ENSMUST00000184335 646 ntTSL 5 BASIC14.27□□□□□ -0.13
Col6a1Q04857 Gm3508-201ENSMUST00000186012 792 ntBASIC14.27□□□□□ -0.13
Col6a1Q04857 Gm8885-201ENSMUST00000189382 598 ntBASIC14.27□□□□□ -0.13
Col6a1Q04857 Gm28693-202ENSMUST00000190758 331 ntBASIC14.27□□□□□ -0.13
Col6a1Q04857 Saa2-202ENSMUST00000210272 511 ntTSL 3 BASIC14.27□□□□□ -0.13
Col6a1Q04857 Gm5950-201ENSMUST00000213337 772 ntBASIC14.27□□□□□ -0.13
Col6a1Q04857 4930502A04Rik-201ENSMUST00000214059 865 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Col6a1Q04857 Treml1-205ENSMUST00000225849 974 ntAPPRIS ALT2 BASIC14.27□□□□□ -0.13
Col6a1Q04857 Lypd2-201ENSMUST00000023260 513 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Col6a1Q04857 Cym-201ENSMUST00000029504 1236 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Col6a1Q04857 Tmem215-202ENSMUST00000179526 2276 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Col6a1Q04857 Troap-201ENSMUST00000039665 2264 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Col6a1Q04857 Prrc2a-206ENSMUST00000174805 6741 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Col6a1Q04857 Sema6c-201ENSMUST00000090821 3933 ntAPPRIS P3 TSL 5 BASIC14.27□□□□□ -0.13
Col6a1Q04857 Hlcs-202ENSMUST00000163193 5371 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Col6a1Q04857 Gm5884-201ENSMUST00000036712 1479 ntBASIC14.26□□□□□ -0.13
Col6a1Q04857 Pkp3-202ENSMUST00000106039 2919 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col6a1Q04857 Grb10-201ENSMUST00000093321 5061 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col6a1Q04857 Trim27-205ENSMUST00000221464 1400 ntTSL 5 BASIC14.26□□□□□ -0.13
Col6a1Q04857 Plch2-210ENSMUST00000176194 5619 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
Col6a1Q04857 Hk2-204ENSMUST00000170833 2792 ntTSL 5 BASIC14.26□□□□□ -0.13
Col6a1Q04857 Slc7a7-202ENSMUST00000195970 2057 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
Col6a1Q04857 Mob1b-201ENSMUST00000006424 2705 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col6a1Q04857 Dlg4-201ENSMUST00000018700 3204 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col6a1Q04857 Gm23200-201ENSMUST00000104379 132 ntBASIC14.26□□□□□ -0.13
Col6a1Q04857 Ndufs5-203ENSMUST00000106207 680 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col6a1Q04857 Cyb5d1-202ENSMUST00000108660 1034 ntTSL 5 BASIC14.26□□□□□ -0.13
Col6a1Q04857 P2rx4-204ENSMUST00000139631 1030 ntTSL 5 BASIC14.26□□□□□ -0.13
Col6a1Q04857 P2rx4-206ENSMUST00000142664 1111 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Col6a1Q04857 Tmem116-209ENSMUST00000156080 1184 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 55.2 ms