Protein–RNA interactions for Protein: P48381

Rfx3, Transcription factor RFX3, mousemouse

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx3P48381 Serpinb6d-201ENSMUST00000059637 1463 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Rfx3P48381 Mlx-202ENSMUST00000107302 1826 ntAPPRIS ALT1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Rfx3P48381 Dlg4-204ENSMUST00000108589 3271 ntTSL 5 BASIC11.7□□□□□ -0.54
Rfx3P48381 Gale-202ENSMUST00000102541 1430 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Rfx3P48381 Zic4-209ENSMUST00000173933 1764 ntAPPRIS P1 TSL 5 BASIC11.69□□□□□ -0.54
Rfx3P48381 Sipa1l2-204ENSMUST00000212987 6690 ntAPPRIS P2 TSL 5 BASIC11.69□□□□□ -0.54
Rfx3P48381 Cxadr-202ENSMUST00000114229 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC11.69□□□□□ -0.54
Rfx3P48381 Arnt-203ENSMUST00000102749 2699 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Rfx3P48381 A630014C17Rik-201ENSMUST00000150973 2984 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Rfx3P48381 Syne3-203ENSMUST00000109927 5263 ntAPPRIS ALT2 TSL 5 BASIC11.69□□□□□ -0.54
Rfx3P48381 F630040K05Rik-202ENSMUST00000180558 2633 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Rfx3P48381 Ugt1a6a-201ENSMUST00000014263 2265 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Rfx3P48381 Pik3r1-201ENSMUST00000035532 2923 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Rfx3P48381 Unc5c-202ENSMUST00000106236 9646 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Rfx3P48381 Sfxn3-203ENSMUST00000111954 2867 ntTSL 5 BASIC11.69□□□□□ -0.54
Rfx3P48381 Ctnnbip1-202ENSMUST00000105692 634 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Rfx3P48381 Gm12341-201ENSMUST00000119724 503 ntBASIC11.69□□□□□ -0.54
Rfx3P48381 Gm16342-201ENSMUST00000124025 1025 ntBASIC11.69□□□□□ -0.54
Rfx3P48381 Gm15945-201ENSMUST00000146755 810 ntTSL 3 BASIC11.69□□□□□ -0.54
Rfx3P48381 1600014C23Rik-201ENSMUST00000178179 518 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Rfx3P48381 Gm26600-201ENSMUST00000181637 1256 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Rfx3P48381 2410002F23Rik-214ENSMUST00000186606 748 ntAPPRIS ALT2 TSL 5 BASIC11.69□□□□□ -0.54
Rfx3P48381 Ip6k2-210ENSMUST00000194875 748 ntTSL 2 BASIC11.69□□□□□ -0.54
Rfx3P48381 AC099934.3-201ENSMUST00000223192 1147 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Rfx3P48381 Mpc1-201ENSMUST00000046754 920 ntAPPRIS P1 TSL 5 BASIC11.69□□□□□ -0.54
Rfx3P48381 Olfr750-201ENSMUST00000048478 1132 ntAPPRIS P1 BASIC11.69□□□□□ -0.54
Rfx3P48381 Rn7sk-201ENSMUST00000083103 331 ntBASIC11.69□□□□□ -0.54
Rfx3P48381 Gm26315-201ENSMUST00000083890 321 ntBASIC11.69□□□□□ -0.54
Rfx3P48381 Gpatch4-203ENSMUST00000193398 2210 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Rfx3P48381 Ptp4a1-201ENSMUST00000027232 4145 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Rfx3P48381 Fam217a-204ENSMUST00000225242 1811 ntAPPRIS ALT2 BASIC11.69□□□□□ -0.54
Rfx3P48381 Map4k1-203ENSMUST00000208227 2720 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Rfx3P48381 Map4k1-201ENSMUST00000085835 2724 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Rfx3P48381 Cyb5rl-201ENSMUST00000030364 2360 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Rfx3P48381 A930007I19Rik-203ENSMUST00000181726 2099 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Rfx3P48381 Haus8-202ENSMUST00000110071 1452 ntAPPRIS P3 TSL 1 (best) BASIC11.69□□□□□ -0.54
Rfx3P48381 Rapsn-202ENSMUST00000111445 1450 ntTSL 5 BASIC11.69□□□□□ -0.54
Rfx3P48381 Zc3h18-201ENSMUST00000017622 3810 ntAPPRIS P4 TSL 1 (best) BASIC11.69□□□□□ -0.54
Rfx3P48381 Usp20-211ENSMUST00000170476 4970 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Rfx3P48381 Tulp2-201ENSMUST00000024233 1749 ntAPPRIS P5 TSL 1 (best) BASIC11.69□□□□□ -0.54
Rfx3P48381 Stk33-204ENSMUST00000121748 2295 ntAPPRIS P1 TSL 5 BASIC11.69□□□□□ -0.54
Rfx3P48381 Gm37324-201ENSMUST00000194500 4504 ntBASIC11.68□□□□□ -0.54
Rfx3P48381 Prpf40a-206ENSMUST00000209364 2833 ntAPPRIS ALT2 TSL 5 BASIC11.68□□□□□ -0.54
Rfx3P48381 Sept10-201ENSMUST00000165971 2532 ntAPPRIS P2 TSL 1 (best) BASIC11.68□□□□□ -0.54
Rfx3P48381 H2-T22-202ENSMUST00000077960 1694 ntAPPRIS P3 TSL 1 (best) BASIC11.68□□□□□ -0.54
Rfx3P48381 Tufm-201ENSMUST00000098048 1679 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Rfx3P48381 Pde4d-220ENSMUST00000177907 2244 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Rfx3P48381 Duox1-201ENSMUST00000099461 5267 ntAPPRIS P1 TSL 2 BASIC11.68□□□□□ -0.54
Rfx3P48381 Setdb1-201ENSMUST00000015841 4658 ntAPPRIS P3 TSL 1 (best) BASIC11.68□□□□□ -0.54
Rfx3P48381 Terf2ip-201ENSMUST00000052138 3560 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Rfx3P48381 Slc7a11-205ENSMUST00000194462 2419 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Rfx3P48381 Rpe-201ENSMUST00000027157 2692 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Rfx3P48381 Tfe3-204ENSMUST00000115677 2943 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Rfx3P48381 Auts2-208ENSMUST00000161374 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC11.68□□□□□ -0.54
Rfx3P48381 Ppp6r3-202ENSMUST00000113997 4952 ntAPPRIS ALT1 TSL 5 BASIC11.68□□□□□ -0.54
Rfx3P48381 Lcn5-202ENSMUST00000100312 660 ntAPPRIS ALT2 TSL 1 (best) BASIC11.68□□□□□ -0.54
Rfx3P48381 Cox16-202ENSMUST00000110340 668 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Rfx3P48381 Gm15317-201ENSMUST00000129569 699 ntTSL 3 BASIC11.68□□□□□ -0.54
Rfx3P48381 Gm15491-201ENSMUST00000133963 751 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Rfx3P48381 Fbxw4-204ENSMUST00000160018 931 ntTSL 3 BASIC11.68□□□□□ -0.54
Rfx3P48381 Flg-208ENSMUST00000180308 1076 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Rfx3P48381 AI463170-203ENSMUST00000219353 430 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Rfx3P48381 AC132467.2-202ENSMUST00000227726 559 ntBASIC11.68□□□□□ -0.54
Rfx3P48381 Cd302-201ENSMUST00000028356 1257 ntAPPRIS P3 TSL 1 (best) BASIC11.68□□□□□ -0.54
Rfx3P48381 Duoxa1-201ENSMUST00000028653 1026 ntAPPRIS P1 TSL 3 BASIC11.68□□□□□ -0.54
Rfx3P48381 Hfe-201ENSMUST00000006787 516 ntTSL 5 BASIC11.68□□□□□ -0.54
Rfx3P48381 Hfe-203ENSMUST00000091707 816 ntTSL 5 BASIC11.68□□□□□ -0.54
Rfx3P48381 7420426K07Rik-201ENSMUST00000098460 1504 ntAPPRIS P1 BASIC11.68□□□□□ -0.54
Rfx3P48381 Acad12-202ENSMUST00000111776 2269 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Rfx3P48381 Rab39-201ENSMUST00000068449 2971 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Rfx3P48381 Nup160-201ENSMUST00000057481 5684 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Rfx3P48381 Astn1-202ENSMUST00000170718 2927 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Rfx3P48381 Gatad2a-206ENSMUST00000212478 3622 ntAPPRIS ALT2 TSL 5 BASIC11.68□□□□□ -0.54
Rfx3P48381 Psd-210ENSMUST00000225323 3398 ntAPPRIS ALT2 BASIC11.68□□□□□ -0.54
Rfx3P48381 Cyb561d1-202ENSMUST00000106654 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Rfx3P48381 Oprm1-205ENSMUST00000078634 1695 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Rfx3P48381 Adamtsl4-202ENSMUST00000117782 4036 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Rfx3P48381 Gm13722-201ENSMUST00000117964 3066 ntBASIC11.68□□□□□ -0.54
Rfx3P48381 Gtf2i-201ENSMUST00000059042 4455 ntAPPRIS P4 TSL 1 (best) BASIC11.68□□□□□ -0.54
Rfx3P48381 Gm9866-202ENSMUST00000182473 1882 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Rfx3P48381 Zbtb44-201ENSMUST00000115222 8861 ntTSL 5 BASIC11.68□□□□□ -0.54
Rfx3P48381 Itfg2-201ENSMUST00000001559 2320 ntAPPRIS P2 TSL 1 (best) BASIC11.68□□□□□ -0.54
Rfx3P48381 Gprc5a-201ENSMUST00000050104 2083 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Rfx3P48381 Lrrc20-201ENSMUST00000049242 3216 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Rfx3P48381 Adm-201ENSMUST00000033054 1390 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Rfx3P48381 Zmym1-202ENSMUST00000106099 2982 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
Rfx3P48381 Sh3pxd2a-202ENSMUST00000111800 10380 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
Rfx3P48381 Pbld2-201ENSMUST00000020262 2212 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Rfx3P48381 Abo-201ENSMUST00000102900 1779 ntAPPRIS P2 TSL 1 (best) BASIC11.67□□□□□ -0.54
Rfx3P48381 AC122840.1-201ENSMUST00000220915 3334 ntBASIC11.67□□□□□ -0.54
Rfx3P48381 Ccdc106-202ENSMUST00000108571 1318 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Rfx3P48381 Sipa1l3-207ENSMUST00000182484 2420 ntTSL 5 BASIC11.67□□□□□ -0.54
Rfx3P48381 Clcn3-201ENSMUST00000004430 4175 ntAPPRIS ALT1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Rfx3P48381 Cyth2-208ENSMUST00000211783 1983 ntTSL 5 BASIC11.67□□□□□ -0.54
Rfx3P48381 Glis3-202ENSMUST00000112612 3016 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
Rfx3P48381 Nudt18-202ENSMUST00000228554 3619 ntBASIC11.67□□□□□ -0.54
Rfx3P48381 Gfpt1-202ENSMUST00000113655 1255 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Rfx3P48381 Gm7488-201ENSMUST00000117148 684 ntBASIC11.67□□□□□ -0.54
Rfx3P48381 Gm11400-201ENSMUST00000120853 1214 ntBASIC11.67□□□□□ -0.54
Rfx3P48381 Pax5-213ENSMUST00000173821 996 ntTSL 5 BASIC11.67□□□□□ -0.54
Retrieved 100 of 76,532 protein–RNA pairs in 39.7 ms