Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Map3k12-201ENSMUST00000023812 5182 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Cdx1P18111 Oxr1-204ENSMUST00000110297 4596 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
Cdx1P18111 Gm11738-201ENSMUST00000134069 2158 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
Cdx1P18111 Igsf9-201ENSMUST00000052629 4133 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Cdx1P18111 Serpinb12-202ENSMUST00000112724 1623 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Cdx1P18111 Srp54b-202ENSMUST00000218879 3642 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Cdx1P18111 Zcchc11-202ENSMUST00000097925 5865 ntAPPRIS ALT2 TSL 5 BASIC10.47□□□□□ -0.73
Cdx1P18111 Nfe2l1-211ENSMUST00000167149 4596 ntAPPRIS P3 TSL 1 (best) BASIC10.47□□□□□ -0.73
Cdx1P18111 Leprot-202ENSMUST00000106927 1754 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
Cdx1P18111 Ncapd3-201ENSMUST00000073127 5499 ntAPPRIS P2 TSL 5 BASIC10.47□□□□□ -0.73
Cdx1P18111 Tcf4-252ENSMUST00000202477 1873 ntTSL 5 BASIC10.47□□□□□ -0.73
Cdx1P18111 Ctbs-201ENSMUST00000029840 2629 ntAPPRIS P3 TSL 1 (best) BASIC10.47□□□□□ -0.73
Cdx1P18111 Rcan2-202ENSMUST00000044895 3363 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
Cdx1P18111 Kifc5b-201ENSMUST00000078961 2627 ntAPPRIS P1 TSL 5 BASIC10.47□□□□□ -0.73
Cdx1P18111 Tcf25-203ENSMUST00000211932 5002 ntAPPRIS ALT2 TSL 1 (best) BASIC10.47□□□□□ -0.73
Cdx1P18111 Chst15-201ENSMUST00000077472 5041 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Cdx1P18111 Klhl29-202ENSMUST00000218384 2716 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
Cdx1P18111 Hkdc1-201ENSMUST00000020277 3517 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Cdx1P18111 Tmem129-201ENSMUST00000019439 2828 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Cdx1P18111 Dhdds-204ENSMUST00000105887 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Cdx1P18111 Rgs11-202ENSMUST00000122058 2005 ntAPPRIS ALT2 TSL 2 BASIC10.47□□□□□ -0.73
Cdx1P18111 Dstyk-201ENSMUST00000045110 6282 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Cdx1P18111 Plekhg2-201ENSMUST00000094644 4623 ntAPPRIS P3 TSL 1 (best) BASIC10.47□□□□□ -0.73
Cdx1P18111 Pebp1-202ENSMUST00000111973 779 ntTSL 3 BASIC10.47□□□□□ -0.73
Cdx1P18111 Kif16bos-201ENSMUST00000124774 495 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
Cdx1P18111 Gm12212-201ENSMUST00000141032 378 ntTSL 3 BASIC10.47□□□□□ -0.73
Cdx1P18111 Gm20412-201ENSMUST00000173249 633 ntTSL 5 BASIC10.47□□□□□ -0.73
Cdx1P18111 Gm43691-201ENSMUST00000196625 697 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
Cdx1P18111 B9d2-202ENSMUST00000205325 593 ntTSL 2 BASIC10.47□□□□□ -0.73
Cdx1P18111 Slc10a7-204ENSMUST00000209992 939 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
Cdx1P18111 AC151971.1-201ENSMUST00000217329 993 ntTSL 5 BASIC10.47□□□□□ -0.73
Cdx1P18111 Pdlim7-203ENSMUST00000069968 1006 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
Cdx1P18111 Ftl1-201ENSMUST00000094434 968 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Cdx1P18111 Tyk2-206ENSMUST00000216874 4828 ntAPPRIS P2 TSL 1 (best) BASIC10.47□□□□□ -0.73
Cdx1P18111 Lnx1-209ENSMUST00000153543 2208 ntTSL 5 BASIC10.47□□□□□ -0.73
Cdx1P18111 Fam214b-202ENSMUST00000107956 3107 ntAPPRIS P1 TSL 5 BASIC10.47□□□□□ -0.73
Cdx1P18111 Cyp21a2-ps-201ENSMUST00000172970 1383 ntBASIC10.47□□□□□ -0.73
Cdx1P18111 Nt5c3b-201ENSMUST00000092688 1399 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Cdx1P18111 Mylk-201ENSMUST00000023538 7824 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Cdx1P18111 Ptpn6-201ENSMUST00000004377 2308 ntAPPRIS ALT2 TSL 1 (best) BASIC10.47□□□□□ -0.73
Cdx1P18111 Wnt16-202ENSMUST00000128245 3285 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
Cdx1P18111 Kif1a-210ENSMUST00000190723 6141 ntTSL 5 BASIC10.47□□□□□ -0.73
Cdx1P18111 Ccdc126-202ENSMUST00000114491 2372 ntTSL 5 BASIC10.47□□□□□ -0.73
Cdx1P18111 Acer1-201ENSMUST00000056113 2429 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Cdx1P18111 Sergef-201ENSMUST00000033127 1465 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Cdx1P18111 Galnt11-202ENSMUST00000114950 2493 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Cdx1P18111 Alkbh3os1-201ENSMUST00000028621 1549 ntTSL 5 BASIC10.47□□□□□ -0.73
Cdx1P18111 Kalrn-210ENSMUST00000114964 2693 ntTSL 5 BASIC10.47□□□□□ -0.73
Cdx1P18111 Crhr2-201ENSMUST00000003568 2695 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
Cdx1P18111 Sesn3-204ENSMUST00000208222 9125 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Cdx1P18111 Tufm-201ENSMUST00000098048 1679 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Cdx1P18111 Sin3a-206ENSMUST00000168177 5086 ntAPPRIS ALT1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Cdx1P18111 Speg-201ENSMUST00000087122 10801 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Cdx1P18111 Pabpc4-204ENSMUST00000106243 3111 ntAPPRIS ALT1 TSL 5 BASIC10.47□□□□□ -0.73
Cdx1P18111 Mirg-208ENSMUST00000182499 3187 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
Cdx1P18111 Nagk-202ENSMUST00000113850 1918 ntTSL 5 BASIC10.46□□□□□ -0.73
Cdx1P18111 Cngb1-203ENSMUST00000120044 3243 ntAPPRIS ALT2 TSL 5 BASIC10.46□□□□□ -0.73
Cdx1P18111 Zfp593-201ENSMUST00000030644 1994 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.73
Cdx1P18111 Ptgr2-207ENSMUST00000146377 2073 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.73
Cdx1P18111 Slc7a7-202ENSMUST00000195970 2057 ntAPPRIS P1 TSL 5 BASIC10.46□□□□□ -0.73
Cdx1P18111 Cplx1-201ENSMUST00000046892 2189 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.73
Cdx1P18111 Ddah1-202ENSMUST00000120310 2291 ntTSL 1 (best) BASIC10.46□□□□□ -0.73
Cdx1P18111 Hnrnpf-203ENSMUST00000167182 2271 ntAPPRIS P1 TSL 3 BASIC10.46□□□□□ -0.73
Cdx1P18111 Bcl9l-201ENSMUST00000074989 5339 ntAPPRIS P2 TSL 1 (best) BASIC10.46□□□□□ -0.73
Cdx1P18111 Ralgps2-207ENSMUST00000188656 2481 ntTSL 1 (best) BASIC10.46□□□□□ -0.73
Cdx1P18111 B930036N10Rik-202ENSMUST00000181170 3544 ntBASIC10.46□□□□□ -0.73
Cdx1P18111 Gm15321-201ENSMUST00000121290 288 ntBASIC10.46□□□□□ -0.73
Cdx1P18111 Gm12454-201ENSMUST00000139119 978 ntTSL 2 BASIC10.46□□□□□ -0.73
Cdx1P18111 Spata3-209ENSMUST00000152501 743 ntTSL 1 (best) BASIC10.46□□□□□ -0.73
Cdx1P18111 Il11-202ENSMUST00000163481 990 ntTSL 1 (best) BASIC10.46□□□□□ -0.73
Cdx1P18111 Rab40c-203ENSMUST00000164982 789 ntTSL 5 BASIC10.46□□□□□ -0.73
Cdx1P18111 Mrps18c-201ENSMUST00000016977 638 ntAPPRIS P2 TSL 1 (best) BASIC10.46□□□□□ -0.73
Cdx1P18111 Gm3436-201ENSMUST00000179930 840 ntBASIC10.46□□□□□ -0.73
Cdx1P18111 Gm35549-203ENSMUST00000204619 644 ntAPPRIS P1 TSL 5 BASIC10.46□□□□□ -0.73
Cdx1P18111 Mrpl36-201ENSMUST00000022098 923 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.73
Cdx1P18111 Nt5c3b-205ENSMUST00000107399 1427 ntTSL 1 (best) BASIC10.46□□□□□ -0.74
Cdx1P18111 Ccdc160-201ENSMUST00000101588 1536 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.74
Cdx1P18111 Olfr160-203ENSMUST00000215727 1667 ntAPPRIS P1 TSL 5 BASIC10.46□□□□□ -0.74
Cdx1P18111 Map4-205ENSMUST00000165876 5573 ntAPPRIS ALT2 TSL 5 BASIC10.46□□□□□ -0.74
Cdx1P18111 Prkcsh-202ENSMUST00000115331 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC10.46□□□□□ -0.74
Cdx1P18111 Plekhn1-202ENSMUST00000105571 2004 ntTSL 5 BASIC10.46□□□□□ -0.74
Cdx1P18111 Lax1-201ENSMUST00000169295 2309 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.74
Cdx1P18111 Acin1-219ENSMUST00000148754 2373 ntAPPRIS ALT2 TSL 5 BASIC10.46□□□□□ -0.74
Cdx1P18111 Traf7-201ENSMUST00000070777 2384 ntTSL 5 BASIC10.46□□□□□ -0.74
Cdx1P18111 Mrpl45-201ENSMUST00000019026 2431 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.74
Cdx1P18111 Pcgf2-207ENSMUST00000179765 2485 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.74
Cdx1P18111 Rnf4-201ENSMUST00000030992 2895 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.74
Cdx1P18111 Zfp618-202ENSMUST00000064814 2868 ntAPPRIS P2 TSL 5 BASIC10.46□□□□□ -0.74
Cdx1P18111 Tmem246-201ENSMUST00000042750 2989 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.74
Cdx1P18111 Gm34425-201ENSMUST00000216269 3079 ntTSL 5 BASIC10.46□□□□□ -0.74
Cdx1P18111 Apopt1-203ENSMUST00000162316 3107 ntTSL 1 (best) BASIC10.46□□□□□ -0.74
Cdx1P18111 Mbtps1-201ENSMUST00000081381 4195 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.74
Cdx1P18111 Kdm5c-201ENSMUST00000082177 5520 ntAPPRIS ALT2 TSL 5 BASIC10.46□□□□□ -0.74
Cdx1P18111 Six4-202ENSMUST00000175693 6817 ntAPPRIS ALT2 TSL 5 BASIC10.45□□□□□ -0.74
Cdx1P18111 Gpd2-201ENSMUST00000028167 5620 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
Cdx1P18111 Camsap3-203ENSMUST00000207077 3832 ntAPPRIS ALT2 TSL 1 (best) BASIC10.45□□□□□ -0.74
Cdx1P18111 Rnf180-205ENSMUST00000226044 3279 ntAPPRIS ALT2 BASIC10.45□□□□□ -0.74
Cdx1P18111 AU022754-201ENSMUST00000180441 2976 ntTSL 1 (best) BASIC10.45□□□□□ -0.74
Cdx1P18111 Gm32479-201ENSMUST00000204226 2739 ntTSL 2 BASIC10.45□□□□□ -0.74
Cdx1P18111 Cdkl2-203ENSMUST00000113140 2559 ntAPPRIS P4 TSL 5 BASIC10.45□□□□□ -0.74
Retrieved 100 of 76,532 protein–RNA pairs in 47.3 ms