Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Galns-203ENSMUST00000212319 2111 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Msx1P13297 4930550C14Rik-204ENSMUST00000217318 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Msx1P13297 Gm9368-201ENSMUST00000219348 831 ntBASIC12.39□□□□□ -0.43
Msx1P13297 CT025552.1-201ENSMUST00000224561 521 ntBASIC12.39□□□□□ -0.43
Msx1P13297 Cts7-204ENSMUST00000225321 1257 ntBASIC12.39□□□□□ -0.43
Msx1P13297 St13-201ENSMUST00000023039 1089 ntTSL 5 BASIC12.39□□□□□ -0.43
Msx1P13297 Mien1-201ENSMUST00000002655 747 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Msx1P13297 Ier3-201ENSMUST00000003635 1131 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Msx1P13297 Tceal9-201ENSMUST00000048687 1019 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Msx1P13297 Nkiras2-202ENSMUST00000051947 831 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Msx1P13297 Slc8a2-201ENSMUST00000168693 4171 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Msx1P13297 Gm37795-201ENSMUST00000194216 2459 ntBASIC12.39□□□□□ -0.43
Msx1P13297 S100pbp-205ENSMUST00000117350 2241 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Msx1P13297 Nfat5-201ENSMUST00000075922 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Msx1P13297 Srebf2-201ENSMUST00000023100 4989 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Msx1P13297 Gm43273-201ENSMUST00000199649 2594 ntBASIC12.39□□□□□ -0.43
Msx1P13297 Zfp583-201ENSMUST00000062765 2550 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Msx1P13297 Gm12940-202ENSMUST00000137236 1970 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Msx1P13297 Cant1-203ENSMUST00000106287 1476 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Msx1P13297 Rsbn1-201ENSMUST00000051139 4762 ntAPPRIS P2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Msx1P13297 Glipr2-202ENSMUST00000107855 1816 ntTSL 2 BASIC12.39□□□□□ -0.43
Msx1P13297 AC087890.1-201ENSMUST00000219321 1823 ntTSL 5 BASIC12.39□□□□□ -0.43
Msx1P13297 Gpr4-201ENSMUST00000060225 2882 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Msx1P13297 Otud7b-201ENSMUST00000035519 8043 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Msx1P13297 Trim45-203ENSMUST00000106980 3337 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
Msx1P13297 Rarg-201ENSMUST00000043172 2953 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
Msx1P13297 Sim2-201ENSMUST00000072182 3670 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Msx1P13297 Hipk3-201ENSMUST00000028600 7454 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Msx1P13297 Neil1-203ENSMUST00000190245 1693 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Msx1P13297 Ackr4-204ENSMUST00000219146 1654 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
Msx1P13297 Slc6a21-206ENSMUST00000210861 2838 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
Msx1P13297 B230206H07Rik-202ENSMUST00000134845 3269 ntTSL 5 BASIC12.38□□□□□ -0.43
Msx1P13297 Gm37019-201ENSMUST00000192133 2134 ntBASIC12.38□□□□□ -0.43
Msx1P13297 Pfkl-201ENSMUST00000020522 3730 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Msx1P13297 Mpi-201ENSMUST00000034856 1780 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Msx1P13297 Clstn2-202ENSMUST00000162295 4174 ntAPPRIS ALT2 TSL 5 BASIC12.38□□□□□ -0.43
Msx1P13297 Bap1-201ENSMUST00000022458 3460 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Msx1P13297 Adgrl1-204ENSMUST00000131717 5152 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Msx1P13297 Ccdc92b-201ENSMUST00000100866 4002 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Msx1P13297 Vmn1r198-202ENSMUST00000226786 6195 ntAPPRIS P2 BASIC12.38□□□□□ -0.43
Msx1P13297 Bscl2-210ENSMUST00000171649 1962 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
Msx1P13297 Spg7-202ENSMUST00000125975 2408 ntAPPRIS ALT2 TSL 5 BASIC12.38□□□□□ -0.43
Msx1P13297 Arl6ip6-201ENSMUST00000028336 2548 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Msx1P13297 Ak1-202ENSMUST00000113277 2063 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Msx1P13297 C030005K06Rik-201ENSMUST00000129164 2076 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Msx1P13297 Gm11638-201ENSMUST00000153672 1615 ntTSL 2 BASIC12.38□□□□□ -0.43
Msx1P13297 Mtus2-203ENSMUST00000085558 7543 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Msx1P13297 Mir874-201ENSMUST00000104769 76 ntBASIC12.38□□□□□ -0.43
Msx1P13297 Psme2b-201ENSMUST00000104958 837 ntAPPRIS P1 BASIC12.38□□□□□ -0.43
Msx1P13297 Agbl3-202ENSMUST00000115012 790 ntTSL 3 BASIC12.38□□□□□ -0.43
Msx1P13297 Agbl3-203ENSMUST00000115014 805 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Msx1P13297 Gm14209-201ENSMUST00000154946 462 ntTSL 5 BASIC12.38□□□□□ -0.43
Msx1P13297 Skint8-205ENSMUST00000165046 1280 ntAPPRIS P2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Msx1P13297 Gm44127-201ENSMUST00000203565 291 ntTSL 3 BASIC12.38□□□□□ -0.43
Msx1P13297 Gm44632-201ENSMUST00000207245 474 ntTSL 2 BASIC12.38□□□□□ -0.43
Msx1P13297 Gm34549-203ENSMUST00000208300 896 ntTSL 5 BASIC12.38□□□□□ -0.43
Msx1P13297 Gm45564-201ENSMUST00000210460 530 ntTSL 5 BASIC12.38□□□□□ -0.43
Msx1P13297 Snapc5-201ENSMUST00000034965 1228 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Msx1P13297 Ccdc54-201ENSMUST00000062439 1296 ntAPPRIS P1 BASIC12.38□□□□□ -0.43
Msx1P13297 Oosp3-201ENSMUST00000069760 807 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Msx1P13297 Cryge-201ENSMUST00000087359 631 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Msx1P13297 Ppcdc-209ENSMUST00000214624 1814 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Msx1P13297 Spock1-205ENSMUST00000187852 3113 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Msx1P13297 Polr2c-202ENSMUST00000211939 3881 ntTSL 2 BASIC12.38□□□□□ -0.43
Msx1P13297 Sp9-201ENSMUST00000090813 4514 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Msx1P13297 Pdxk-ps-201ENSMUST00000159650 2342 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Msx1P13297 Prickle3-201ENSMUST00000033485 2301 ntAPPRIS P2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Msx1P13297 Krt32-201ENSMUST00000107419 1664 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Msx1P13297 Cux2-202ENSMUST00000111752 8784 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Msx1P13297 Usp18-201ENSMUST00000032198 1771 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Msx1P13297 Pde9a-203ENSMUST00000127929 1891 ntAPPRIS P2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Msx1P13297 Cacna2d2-204ENSMUST00000166799 3474 ntAPPRIS ALT2 TSL 5 BASIC12.38□□□□□ -0.43
Msx1P13297 Kansl3-205ENSMUST00000186470 2801 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Msx1P13297 BB123696-201ENSMUST00000222580 2056 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Msx1P13297 Ccdc185-201ENSMUST00000060041 2055 ntAPPRIS P1 BASIC12.38□□□□□ -0.43
Msx1P13297 Atg16l1-202ENSMUST00000113186 3004 ntAPPRIS ALT1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Msx1P13297 Diaph3-202ENSMUST00000168889 4582 ntAPPRIS P2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Msx1P13297 Diaph3-201ENSMUST00000022599 4582 ntAPPRIS ALT2 TSL 5 BASIC12.37□□□□□ -0.43
Msx1P13297 Gnas-204ENSMUST00000087877 3947 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Msx1P13297 Polr3g-201ENSMUST00000048993 3054 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Msx1P13297 Cnppd1-201ENSMUST00000041213 2429 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Msx1P13297 Minos1-203ENSMUST00000143971 2549 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Msx1P13297 Sall4-202ENSMUST00000075044 2534 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Msx1P13297 Zbtb17-201ENSMUST00000006377 2722 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Msx1P13297 Rasd2-202ENSMUST00000139848 2810 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Msx1P13297 Stox2-201ENSMUST00000079195 10467 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Msx1P13297 Itk-202ENSMUST00000101306 1185 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Msx1P13297 Tmod4-202ENSMUST00000107227 1260 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
Msx1P13297 Cdkn1a-202ENSMUST00000119901 748 ntAPPRIS P1 TSL 2 BASIC12.37□□□□□ -0.43
Msx1P13297 Gm16087-201ENSMUST00000124395 964 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Msx1P13297 Polr3c-202ENSMUST00000125183 923 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Msx1P13297 Gm829-202ENSMUST00000146622 722 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Msx1P13297 Gm8298-201ENSMUST00000179799 1206 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
Msx1P13297 1700120C14Rik-202ENSMUST00000187967 391 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Msx1P13297 Ggt5-203ENSMUST00000189972 648 ntTSL 3 BASIC12.37□□□□□ -0.43
Msx1P13297 Gm38000-201ENSMUST00000192390 1215 ntBASIC12.37□□□□□ -0.43
Msx1P13297 Psmc3ip-201ENSMUST00000019447 1291 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Msx1P13297 Gm45233-201ENSMUST00000203633 898 ntAPPRIS P5 TSL 5 BASIC12.37□□□□□ -0.43
Msx1P13297 Mea1-201ENSMUST00000002845 840 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Msx1P13297 Nr0b2-201ENSMUST00000042706 1132 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Retrieved 100 of 76,532 protein–RNA pairs in 33.6 ms