Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Fntb-206ENSMUST00000137826 1442 ntAPPRIS P1 TSL 5 BASIC10.68□□□□□ -0.7
Hmgb3O54879 Abcd1-202ENSMUST00000114461 2323 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
Hmgb3O54879 Cog6-201ENSMUST00000036665 3182 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Hmgb3O54879 Srr-202ENSMUST00000108447 3138 ntTSL 5 BASIC10.68□□□□□ -0.7
Hmgb3O54879 Gm43051-201ENSMUST00000201096 2678 ntBASIC10.68□□□□□ -0.7
Hmgb3O54879 Rspo3-201ENSMUST00000092623 3085 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Hmgb3O54879 Hoxd3os1-202ENSMUST00000139005 1701 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
Hmgb3O54879 Tulp2-201ENSMUST00000024233 1749 ntAPPRIS P5 TSL 1 (best) BASIC10.68□□□□□ -0.7
Hmgb3O54879 Sncaip-209ENSMUST00000179625 2568 ntTSL 5 BASIC10.68□□□□□ -0.7
Hmgb3O54879 Dhrs3-202ENSMUST00000105744 1226 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
Hmgb3O54879 Olfr1564-201ENSMUST00000112162 1091 ntAPPRIS P2 BASIC10.68□□□□□ -0.7
Hmgb3O54879 Gm595-201ENSMUST00000114928 2122 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Hmgb3O54879 Gm13385-201ENSMUST00000121089 220 ntBASIC10.68□□□□□ -0.7
Hmgb3O54879 Kif16bos-201ENSMUST00000124774 495 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
Hmgb3O54879 Tnni1-205ENSMUST00000148201 1150 ntAPPRIS P1 TSL 5 BASIC10.68□□□□□ -0.7
Hmgb3O54879 Tnni1-206ENSMUST00000152075 1038 ntAPPRIS P1 TSL 5 BASIC10.68□□□□□ -0.7
Hmgb3O54879 Tnni1-207ENSMUST00000152208 1105 ntAPPRIS P1 TSL 5 BASIC10.68□□□□□ -0.7
Hmgb3O54879 Rprl2-201ENSMUST00000157150 290 ntBASIC10.68□□□□□ -0.7
Hmgb3O54879 Gm18733-201ENSMUST00000173950 856 ntBASIC10.68□□□□□ -0.7
Hmgb3O54879 9130024F11Rik-204ENSMUST00000187927 517 ntTSL 5 BASIC10.68□□□□□ -0.7
Hmgb3O54879 Prr29-205ENSMUST00000190268 1141 ntAPPRIS ALT2 TSL 5 BASIC10.68□□□□□ -0.7
Hmgb3O54879 4930432H08Rik-201ENSMUST00000198220 1284 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
Hmgb3O54879 Gm34964-201ENSMUST00000207398 417 ntTSL 5 BASIC10.68□□□□□ -0.7
Hmgb3O54879 Fmr1nb-201ENSMUST00000069731 799 ntAPPRIS ALT2 TSL 1 (best) BASIC10.68□□□□□ -0.7
Hmgb3O54879 S100a7a-201ENSMUST00000079286 1280 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Hmgb3O54879 Krt32-201ENSMUST00000107419 1664 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Hmgb3O54879 Arhgef39-201ENSMUST00000054538 1659 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Hmgb3O54879 Eno2-216ENSMUST00000204896 1640 ntTSL 5 BASIC10.68□□□□□ -0.7
Hmgb3O54879 Acin1-202ENSMUST00000022794 2365 ntAPPRIS ALT2 TSL 5 BASIC10.68□□□□□ -0.7
Hmgb3O54879 Fbxl22-201ENSMUST00000056890 3935 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Hmgb3O54879 Tmc8-204ENSMUST00000119455 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC10.68□□□□□ -0.7
Hmgb3O54879 Vit-201ENSMUST00000024880 2720 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Hmgb3O54879 Fyttd1-211ENSMUST00000171325 4295 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
Hmgb3O54879 Slitrk1-201ENSMUST00000100322 5359 ntAPPRIS P1 BASIC10.68□□□□□ -0.7
Hmgb3O54879 Nap1l1-208ENSMUST00000219961 1512 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
Hmgb3O54879 Nt5c2-202ENSMUST00000168536 3769 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Hmgb3O54879 Gpld1-201ENSMUST00000021773 5224 ntAPPRIS P1 TSL 5 BASIC10.68□□□□□ -0.7
Hmgb3O54879 Tinf2-201ENSMUST00000007733 2956 ntAPPRIS P2 TSL 1 (best) BASIC10.68□□□□□ -0.7
Hmgb3O54879 Prg4-207ENSMUST00000162367 1480 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
Hmgb3O54879 Ppp2r5c-201ENSMUST00000084985 1847 ntAPPRIS P1 TSL 2 BASIC10.68□□□□□ -0.7
Hmgb3O54879 Rec8-201ENSMUST00000002395 2184 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Hmgb3O54879 Map1a-202ENSMUST00000110639 10145 ntAPPRIS ALT2 TSL 5 BASIC10.67□□□□□ -0.7
Hmgb3O54879 Trim15-203ENSMUST00000174195 1778 ntAPPRIS ALT2 TSL 1 (best) BASIC10.67□□□□□ -0.7
Hmgb3O54879 Rrnad1-201ENSMUST00000005016 2492 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Hmgb3O54879 Gemin4-201ENSMUST00000102500 3540 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Hmgb3O54879 Ccdc187-201ENSMUST00000057224 3148 ntAPPRIS P2 TSL 1 (best) BASIC10.67□□□□□ -0.7
Hmgb3O54879 Tjp1-201ENSMUST00000032729 6102 ntAPPRIS ALT2 TSL 1 (best) BASIC10.67□□□□□ -0.7
Hmgb3O54879 H2-T22-202ENSMUST00000077960 1694 ntAPPRIS P3 TSL 1 (best) BASIC10.67□□□□□ -0.7
Hmgb3O54879 Kalrn-210ENSMUST00000114964 2693 ntTSL 5 BASIC10.67□□□□□ -0.7
Hmgb3O54879 Vps52-201ENSMUST00000025178 3332 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Hmgb3O54879 Htr3a-202ENSMUST00000217289 1987 ntAPPRIS ALT2 TSL 1 (best) BASIC10.67□□□□□ -0.7
Hmgb3O54879 Slc6a18-210ENSMUST00000223074 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC10.67□□□□□ -0.7
Hmgb3O54879 Lrrc3-201ENSMUST00000057608 4296 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Hmgb3O54879 Jak1-201ENSMUST00000102781 4906 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Hmgb3O54879 Wdr25-206ENSMUST00000221510 1600 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Hmgb3O54879 Ncoa6-203ENSMUST00000109670 7101 ntAPPRIS P2 TSL 5 BASIC10.67□□□□□ -0.7
Hmgb3O54879 Rnf4-201ENSMUST00000030992 2895 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Hmgb3O54879 Dnajc5-202ENSMUST00000108796 934 ntAPPRIS P1 TSL 5 BASIC10.67□□□□□ -0.7
Hmgb3O54879 C030037D09Rik-202ENSMUST00000136201 1216 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Hmgb3O54879 Gnb2-215ENSMUST00000170293 993 ntTSL 5 BASIC10.67□□□□□ -0.7
Hmgb3O54879 Gm21470-201ENSMUST00000187680 696 ntBASIC10.67□□□□□ -0.7
Hmgb3O54879 Cmc2-201ENSMUST00000078589 523 ntTSL 2 BASIC10.67□□□□□ -0.7
Hmgb3O54879 Sec23a-201ENSMUST00000021375 4109 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Hmgb3O54879 Frmd3-201ENSMUST00000084474 4136 ntAPPRIS P3 TSL 1 (best) BASIC10.67□□□□□ -0.7
Hmgb3O54879 Otop1-202ENSMUST00000114099 3141 ntAPPRIS P5 TSL 5 BASIC10.67□□□□□ -0.7
Hmgb3O54879 Plcd4-205ENSMUST00000113749 4648 ntAPPRIS ALT2 TSL 5 BASIC10.67□□□□□ -0.7
Hmgb3O54879 Arid5a-204ENSMUST00000115032 4640 ntAPPRIS P3 TSL 1 (best) BASIC10.67□□□□□ -0.7
Hmgb3O54879 Slc35b1-201ENSMUST00000021243 1523 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Hmgb3O54879 Tbata-201ENSMUST00000035894 1506 ntAPPRIS P3 TSL 5 BASIC10.67□□□□□ -0.7
Hmgb3O54879 Slc13a2-201ENSMUST00000001122 2412 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Hmgb3O54879 Rad54b-202ENSMUST00000095145 2403 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Hmgb3O54879 Adora1-201ENSMUST00000038191 3625 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Hmgb3O54879 Zfp217-202ENSMUST00000109155 5670 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Hmgb3O54879 Zfp217-201ENSMUST00000063710 5685 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Hmgb3O54879 2310035C23Rik-210ENSMUST00000190501 3852 ntAPPRIS ALT2 TSL 1 (best) BASIC10.67□□□□□ -0.7
Hmgb3O54879 Adck2-204ENSMUST00000140364 3542 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Hmgb3O54879 Capn3-201ENSMUST00000028748 2606 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Hmgb3O54879 Zfp954-201ENSMUST00000056246 2042 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Hmgb3O54879 Gcom1-201ENSMUST00000163998 1726 ntAPPRIS P5 TSL 5 BASIC10.67□□□□□ -0.7
Hmgb3O54879 Nelfcd-202ENSMUST00000109075 2279 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Hmgb3O54879 Treh-202ENSMUST00000071219 1927 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
Hmgb3O54879 Acly-201ENSMUST00000007131 4393 ntAPPRIS P3 TSL 1 (best) BASIC10.66□□□□□ -0.7
Hmgb3O54879 Fyttd1-201ENSMUST00000023489 4312 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Hmgb3O54879 Fam221a-202ENSMUST00000121903 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC10.66□□□□□ -0.7
Hmgb3O54879 Sh3bgr-201ENSMUST00000048770 1321 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Hmgb3O54879 Gjb1-203ENSMUST00000119190 1585 ntAPPRIS P1 TSL 2 BASIC10.66□□□□□ -0.7
Hmgb3O54879 Kif28-202ENSMUST00000211943 2643 ntAPPRIS ALT2 TSL 5 BASIC10.66□□□□□ -0.7
Hmgb3O54879 Dmtn-208ENSMUST00000228009 2643 ntAPPRIS P2 BASIC10.66□□□□□ -0.7
Hmgb3O54879 Edc4-202ENSMUST00000119261 4645 ntAPPRIS P3 TSL 1 (best) BASIC10.66□□□□□ -0.7
Hmgb3O54879 Gm15460-201ENSMUST00000118147 391 ntBASIC10.66□□□□□ -0.7
Hmgb3O54879 Mmab-203ENSMUST00000123256 1277 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
Hmgb3O54879 Gm12264-201ENSMUST00000123949 500 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
Hmgb3O54879 Edn3-203ENSMUST00000140908 731 ntAPPRIS ALT2 TSL 5 BASIC10.66□□□□□ -0.7
Hmgb3O54879 Bik-201ENSMUST00000016902 943 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Hmgb3O54879 Ly6f-202ENSMUST00000189654 818 ntAPPRIS P1 TSL 2 BASIC10.66□□□□□ -0.7
Hmgb3O54879 AC090659.2-201ENSMUST00000225378 1186 ntBASIC10.66□□□□□ -0.7
Hmgb3O54879 Paip2b-201ENSMUST00000058383 3982 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Hmgb3O54879 Slc6a20a-201ENSMUST00000040960 2732 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Hmgb3O54879 Capn8-202ENSMUST00000168514 2483 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
Hmgb3O54879 Gm37711-201ENSMUST00000194907 1749 ntTSL 5 BASIC10.66□□□□□ -0.7
Retrieved 100 of 76,532 protein–RNA pairs in 88 ms