Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 2310007B03Rik-201ENSMUST00000043718 2299 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.39
Chd3B1AR17 Uspl1-205ENSMUST00000121416 3792 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Chd3B1AR17 Nrcam-202ENSMUST00000110748 6275 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Chd3B1AR17 Rpe-202ENSMUST00000113995 2713 ntTSL 3 BASIC12.64□□□□□ -0.39
Chd3B1AR17 AC154747.3-201ENSMUST00000224471 3470 ntBASIC12.64□□□□□ -0.39
Chd3B1AR17 Olfml2a-201ENSMUST00000057279 5579 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Chd3B1AR17 4930488N24Rik-201ENSMUST00000188802 1527 ntBASIC12.64□□□□□ -0.39
Chd3B1AR17 Pxn-214ENSMUST00000212819 1689 ntTSL 5 BASIC12.64□□□□□ -0.39
Chd3B1AR17 Ablim2-209ENSMUST00000129347 1995 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
Chd3B1AR17 Shank2-203ENSMUST00000105902 8988 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
Chd3B1AR17 Tsta3-201ENSMUST00000023231 1311 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Chd3B1AR17 Prss36-202ENSMUST00000118755 3028 ntAPPRIS P2 TSL 5 BASIC12.64□□□□□ -0.39
Chd3B1AR17 Rassf5-201ENSMUST00000027688 3485 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Chd3B1AR17 Gm13736-201ENSMUST00000119272 253 ntBASIC12.64□□□□□ -0.39
Chd3B1AR17 Mogat1-201ENSMUST00000012331 1178 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Chd3B1AR17 Gm14597-202ENSMUST00000129769 715 ntAPPRIS P5 TSL 3 BASIC12.64□□□□□ -0.39
Chd3B1AR17 Iqcf6-201ENSMUST00000171091 537 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
Chd3B1AR17 1700088E04Rik-212ENSMUST00000190959 1403 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
Chd3B1AR17 Gm8099-201ENSMUST00000200510 742 ntBASIC12.64□□□□□ -0.39
Chd3B1AR17 Tmem176b-209ENSMUST00000204073 986 ntAPPRIS P1 TSL 2 BASIC12.64□□□□□ -0.39
Chd3B1AR17 Whamm-203ENSMUST00000209044 1879 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Chd3B1AR17 Snf8-201ENSMUST00000006217 1004 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Chd3B1AR17 Fam49b-201ENSMUST00000063838 3797 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Chd3B1AR17 Il12rb1-201ENSMUST00000000808 2873 ntAPPRIS P2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Chd3B1AR17 Gpc2-205ENSMUST00000161827 2586 ntAPPRIS P2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Chd3B1AR17 Neu2-204ENSMUST00000165109 1824 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
Chd3B1AR17 Ate1-204ENSMUST00000178534 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Chd3B1AR17 Cnot3-201ENSMUST00000038913 2822 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Chd3B1AR17 Grb2-203ENSMUST00000106497 2683 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Chd3B1AR17 Camta1-203ENSMUST00000105668 4962 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Chd3B1AR17 Marco-201ENSMUST00000027639 1925 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Chd3B1AR17 Hykk-201ENSMUST00000039742 5110 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Chd3B1AR17 CT030684.3-201ENSMUST00000227308 2445 ntBASIC12.64□□□□□ -0.39
Chd3B1AR17 Ivns1abp-201ENSMUST00000023918 3511 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Chd3B1AR17 Cdk10-212ENSMUST00000213005 1580 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Chd3B1AR17 Chchd3-201ENSMUST00000066379 1550 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Chd3B1AR17 Gm15782-201ENSMUST00000121073 445 ntBASIC12.63□□□□□ -0.39
Chd3B1AR17 Gm11851-201ENSMUST00000132219 692 ntTSL 5 BASIC12.63□□□□□ -0.39
Chd3B1AR17 Grp-203ENSMUST00000173985 952 ntAPPRIS P2 TSL 5 BASIC12.63□□□□□ -0.39
Chd3B1AR17 Tmem205-202ENSMUST00000178988 862 ntAPPRIS P1 TSL 2 BASIC12.63□□□□□ -0.39
Chd3B1AR17 1700040D17Rik-201ENSMUST00000181305 998 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Chd3B1AR17 Anapc16-205ENSMUST00000182912 566 ntTSL 2 BASIC12.63□□□□□ -0.39
Chd3B1AR17 Gm30459-201ENSMUST00000206203 1193 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Chd3B1AR17 AC132317.1-201ENSMUST00000227227 962 ntBASIC12.63□□□□□ -0.39
Chd3B1AR17 Zfp740-201ENSMUST00000118729 4241 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Chd3B1AR17 Adi1-201ENSMUST00000020957 1652 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Chd3B1AR17 Ctbs-202ENSMUST00000061937 2892 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Chd3B1AR17 Zfp865-201ENSMUST00000076251 7503 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Chd3B1AR17 Lrrc8e-201ENSMUST00000053035 3878 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Chd3B1AR17 Mfsd4a-205ENSMUST00000144548 3288 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Chd3B1AR17 Zfp57-211ENSMUST00000174524 1747 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
Chd3B1AR17 Trp53-202ENSMUST00000108657 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Chd3B1AR17 Sept12-201ENSMUST00000170323 2576 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Chd3B1AR17 Phldb1-213ENSMUST00000144251 3589 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Chd3B1AR17 Rubie-203ENSMUST00000227803 2430 ntBASIC12.63□□□□□ -0.39
Chd3B1AR17 Gm8798-201ENSMUST00000211877 1661 ntBASIC12.63□□□□□ -0.39
Chd3B1AR17 Arhgef40-204ENSMUST00000182061 4756 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Chd3B1AR17 Flcn-202ENSMUST00000091246 2768 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Chd3B1AR17 Abr-203ENSMUST00000094012 5236 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Chd3B1AR17 Zscan29-205ENSMUST00000163766 3611 ntAPPRIS ALT2 TSL 5 BASIC12.63□□□□□ -0.39
Chd3B1AR17 AC013548.1-201ENSMUST00000228850 4738 ntAPPRIS P1 BASIC12.63□□□□□ -0.39
Chd3B1AR17 Pdp1-205ENSMUST00000108301 2635 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Chd3B1AR17 Mrps17-205ENSMUST00000119985 859 ntAPPRIS P1 TSL 2 BASIC12.63□□□□□ -0.39
Chd3B1AR17 Mypopos-201ENSMUST00000124897 560 ntTSL 3 BASIC12.63□□□□□ -0.39
Chd3B1AR17 Gm13850-201ENSMUST00000140465 623 ntTSL 3 BASIC12.63□□□□□ -0.39
Chd3B1AR17 Ndufa2-201ENSMUST00000014438 572 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Chd3B1AR17 Gm3096-201ENSMUST00000185770 364 ntBASIC12.63□□□□□ -0.39
Chd3B1AR17 Rpl7a-ps10-201ENSMUST00000190579 798 ntBASIC12.63□□□□□ -0.39
Chd3B1AR17 Gm5950-201ENSMUST00000213337 772 ntBASIC12.63□□□□□ -0.39
Chd3B1AR17 Ifi30-202ENSMUST00000222087 981 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Chd3B1AR17 CT485787.1-201ENSMUST00000225617 968 ntBASIC12.63□□□□□ -0.39
Chd3B1AR17 Olfr171-201ENSMUST00000079891 945 ntAPPRIS P2 BASIC12.63□□□□□ -0.39
Chd3B1AR17 Rpl7a-ps3-201ENSMUST00000090170 796 ntBASIC12.63□□□□□ -0.39
Chd3B1AR17 Rpl7a-ps5-201ENSMUST00000095218 807 ntAPPRIS P1 BASIC12.63□□□□□ -0.39
Chd3B1AR17 Aspg-201ENSMUST00000079400 2722 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Chd3B1AR17 H3f3a-205ENSMUST00000161308 2841 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Chd3B1AR17 Eif4g3-204ENSMUST00000105830 3252 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Chd3B1AR17 Nmral1-204ENSMUST00000120056 2440 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Chd3B1AR17 Tmub1-203ENSMUST00000115036 1455 ntTSL 5 BASIC12.63□□□□□ -0.39
Chd3B1AR17 Kcnk2-202ENSMUST00000110920 3572 ntAPPRIS ALT1 TSL 5 BASIC12.62□□□□□ -0.39
Chd3B1AR17 Sned1-201ENSMUST00000062202 9147 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Chd3B1AR17 Pcdha2-201ENSMUST00000115662 5361 ntAPPRIS P2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Chd3B1AR17 Fnbp1-209ENSMUST00000113562 4515 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Chd3B1AR17 Ap2a1-204ENSMUST00000167930 3376 ntTSL 5 BASIC12.62□□□□□ -0.39
Chd3B1AR17 Sacs-202ENSMUST00000119509 3468 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
Chd3B1AR17 Pard3-222ENSMUST00000162536 5175 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
Chd3B1AR17 Rgma-201ENSMUST00000094312 3586 ntAPPRIS P2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Chd3B1AR17 Tars2-201ENSMUST00000029752 2400 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
Chd3B1AR17 Atp13a3-201ENSMUST00000061350 7220 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
Chd3B1AR17 Sv2c-203ENSMUST00000182289 2197 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Chd3B1AR17 Gm14019-201ENSMUST00000131514 403 ntTSL 3 BASIC12.62□□□□□ -0.39
Chd3B1AR17 Rhoc-204ENSMUST00000176347 583 ntTSL 5 BASIC12.62□□□□□ -0.39
Chd3B1AR17 Gm27243-201ENSMUST00000183964 521 ntBASIC12.62□□□□□ -0.39
Chd3B1AR17 Gm8176-201ENSMUST00000191297 1099 ntBASIC12.62□□□□□ -0.39
Chd3B1AR17 2010320M18Rik-201ENSMUST00000191396 1009 ntBASIC12.62□□□□□ -0.39
Chd3B1AR17 Gm37201-201ENSMUST00000191845 523 ntBASIC12.62□□□□□ -0.39
Chd3B1AR17 Tpd52l1-203ENSMUST00000213639 827 ntAPPRIS ALT2 TSL 2 BASIC12.62□□□□□ -0.39
Chd3B1AR17 Nfkb1-206ENSMUST00000164430 3007 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Chd3B1AR17 Erg-206ENSMUST00000122199 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Chd3B1AR17 Oraov1-201ENSMUST00000033388 2015 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
Retrieved 100 of 76,532 protein–RNA pairs in 33.8 ms