Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 AC117245.4-201ENSMUST00000217388 1646 ntBASIC30.35■■■□□ 2.45
Scn4aQ9ER60 Srp19-202ENSMUST00000119329 613 ntTSL 2 BASIC30.34■■■□□ 2.45
Scn4aQ9ER60 Gar1-201ENSMUST00000029643 1271 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
Scn4aQ9ER60 Krtap5-4-201ENSMUST00000061403 1046 ntAPPRIS P1 BASIC30.34■■■□□ 2.45
Scn4aQ9ER60 Gpx1-202ENSMUST00000191997 787 ntTSL 2 BASIC30.33■■■□□ 2.45
Scn4aQ9ER60 Purg-201ENSMUST00000070340 1064 ntAPPRIS P1 BASIC30.33■■■□□ 2.45
Scn4aQ9ER60 Cars2-201ENSMUST00000049461 1902 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
Scn4aQ9ER60 Serbp1-212ENSMUST00000204294 717 ntTSL 5 BASIC30.33■■■□□ 2.45
Scn4aQ9ER60 Theg-202ENSMUST00000077433 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC30.33■■■□□ 2.45
Scn4aQ9ER60 Tmem221-201ENSMUST00000052072 1604 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
Scn4aQ9ER60 Rfc5-202ENSMUST00000111953 772 ntTSL 1 (best) BASIC30.32■■■□□ 2.44
Scn4aQ9ER60 Kcnd3os-201ENSMUST00000130683 1091 ntTSL 1 (best) BASIC30.32■■■□□ 2.44
Scn4aQ9ER60 Neurl1b-203ENSMUST00000183077 1084 ntTSL 5 BASIC30.32■■■□□ 2.44
Scn4aQ9ER60 Gm46218-201ENSMUST00000215448 801 ntTSL 5 BASIC30.32■■■□□ 2.44
Scn4aQ9ER60 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC30.31■■■□□ 2.44
Scn4aQ9ER60 Cdc34-201ENSMUST00000020550 1266 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
Scn4aQ9ER60 Cdc34b-202ENSMUST00000188741 1252 ntBASIC30.31■■■□□ 2.44
Scn4aQ9ER60 Cdc34b-201ENSMUST00000021240 1233 ntAPPRIS P1 BASIC30.31■■■□□ 2.44
Scn4aQ9ER60 Polr3gl-201ENSMUST00000091924 1427 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
Scn4aQ9ER60 Sp3os-201ENSMUST00000123087 583 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
Scn4aQ9ER60 Prr3-204ENSMUST00000172900 439 ntTSL 2 BASIC30.3■■■□□ 2.44
Scn4aQ9ER60 Fam168b-208ENSMUST00000191307 844 ntTSL 2 BASIC30.3■■■□□ 2.44
Scn4aQ9ER60 Akr7a5-201ENSMUST00000073787 1288 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
Scn4aQ9ER60 Gm10129-202ENSMUST00000193100 1316 ntBASIC30.3■■■□□ 2.44
Scn4aQ9ER60 Fuz-214ENSMUST00000209132 853 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
Scn4aQ9ER60 AC153524.1-201ENSMUST00000220436 1935 ntBASIC30.29■■■□□ 2.44
Scn4aQ9ER60 C2cd4a-201ENSMUST00000054500 1395 ntAPPRIS P1 TSL 5 BASIC30.29■■■□□ 2.44
Scn4aQ9ER60 Shisa5-201ENSMUST00000026737 1834 ntAPPRIS P3 TSL 1 (best) BASIC30.28■■■□□ 2.44
Scn4aQ9ER60 2810405F15Rik-201ENSMUST00000195368 932 ntBASIC30.28■■■□□ 2.44
Scn4aQ9ER60 Fam149b-203ENSMUST00000090499 2370 ntAPPRIS P4 TSL 1 (best) BASIC30.28■■■□□ 2.44
Scn4aQ9ER60 Mapk15-201ENSMUST00000089669 1929 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
Scn4aQ9ER60 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC30.27■■■□□ 2.44
Scn4aQ9ER60 Aktip-201ENSMUST00000109609 1171 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
Scn4aQ9ER60 Rab3ip-203ENSMUST00000219109 1844 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
Scn4aQ9ER60 Gm11542-201ENSMUST00000126480 1511 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
Scn4aQ9ER60 Naa20-202ENSMUST00000110000 1142 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.44
Scn4aQ9ER60 Tmem234-215ENSMUST00000173758 453 ntTSL 2 BASIC30.26■■■□□ 2.44
Scn4aQ9ER60 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC30.26■■■□□ 2.43
Scn4aQ9ER60 Gm30085-201ENSMUST00000209694 594 ntTSL 3 BASIC30.26■■■□□ 2.43
Scn4aQ9ER60 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
Scn4aQ9ER60 Rhno1-202ENSMUST00000112151 1108 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
Scn4aQ9ER60 Gm42642-201ENSMUST00000200683 355 ntBASIC30.25■■■□□ 2.43
Scn4aQ9ER60 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC30.25■■■□□ 2.43
Scn4aQ9ER60 Ppp2r2c-203ENSMUST00000201156 461 ntTSL 5 BASIC30.24■■■□□ 2.43
Scn4aQ9ER60 Gm13001-201ENSMUST00000154285 774 ntTSL 2 BASIC30.24■■■□□ 2.43
Scn4aQ9ER60 Fbxl15-202ENSMUST00000177667 1243 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
Scn4aQ9ER60 Tspan17-202ENSMUST00000099503 822 ntAPPRIS ALT1 TSL 5 BASIC30.23■■■□□ 2.43
Scn4aQ9ER60 Gm5577-201ENSMUST00000134600 1434 ntTSL 1 (best) BASIC30.23■■■□□ 2.43
Scn4aQ9ER60 Slc36a4-202ENSMUST00000115588 1745 ntAPPRIS ALT2 TSL 1 (best) BASIC30.23■■■□□ 2.43
Scn4aQ9ER60 Kcnk12-201ENSMUST00000055221 1936 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
Scn4aQ9ER60 Mrpl48-207ENSMUST00000146003 1625 ntTSL 1 (best) BASIC30.23■■■□□ 2.43
Scn4aQ9ER60 Rdh14-201ENSMUST00000020947 1480 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
Scn4aQ9ER60 Mrpl40-201ENSMUST00000023391 1185 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
Scn4aQ9ER60 Kif1c-205ENSMUST00000152618 1943 ntTSL 1 (best) BASIC30.22■■■□□ 2.43
Scn4aQ9ER60 Slc44a1-203ENSMUST00000107646 1974 ntTSL 5 BASIC30.22■■■□□ 2.43
Scn4aQ9ER60 Gm14205-201ENSMUST00000138427 739 ntTSL 3 BASIC30.22■■■□□ 2.43
Scn4aQ9ER60 Gm44731-201ENSMUST00000203086 542 ntTSL 3 BASIC30.22■■■□□ 2.43
Scn4aQ9ER60 Fam149b-204ENSMUST00000090503 2053 ntTSL 1 (best) BASIC30.21■■■□□ 2.43
Scn4aQ9ER60 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC30.21■■■□□ 2.43
Scn4aQ9ER60 AC167978.1-201ENSMUST00000182488 456 ntTSL 3 BASIC30.21■■■□□ 2.43
Scn4aQ9ER60 Gm10033-202ENSMUST00000211874 928 ntBASIC30.21■■■□□ 2.43
Scn4aQ9ER60 Gm45894-201ENSMUST00000211940 651 ntTSL 2 BASIC30.21■■■□□ 2.43
Scn4aQ9ER60 Eva1b-201ENSMUST00000052876 1689 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
Scn4aQ9ER60 Gm26833-201ENSMUST00000180899 440 ntBASIC30.2■■■□□ 2.43
Scn4aQ9ER60 Prmt1-205ENSMUST00000207659 945 ntTSL 5 BASIC30.2■■■□□ 2.43
Scn4aQ9ER60 Prmt1-201ENSMUST00000045325 1071 ntTSL 5 BASIC30.2■■■□□ 2.43
Scn4aQ9ER60 B230217C12Rik-201ENSMUST00000054783 1189 ntAPPRIS P1 TSL 5 BASIC30.2■■■□□ 2.43
Scn4aQ9ER60 Tmed10-201ENSMUST00000040766 1482 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.43
Scn4aQ9ER60 Rnaseh1-201ENSMUST00000020959 1455 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.42
Scn4aQ9ER60 Sumo3-209ENSMUST00000174113 512 ntAPPRIS P1 TSL 2 BASIC30.19■■■□□ 2.42
Scn4aQ9ER60 Crb3-202ENSMUST00000097299 1206 ntAPPRIS P3 TSL 1 (best) BASIC30.19■■■□□ 2.42
Scn4aQ9ER60 Ptf1a-201ENSMUST00000028068 1508 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
Scn4aQ9ER60 Ctsz-201ENSMUST00000016400 1441 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
Scn4aQ9ER60 Sc5d-202ENSMUST00000169609 1677 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
Scn4aQ9ER60 Gm11691-201ENSMUST00000130963 658 ntTSL 2 BASIC30.19■■■□□ 2.42
Scn4aQ9ER60 Gsc-201ENSMUST00000021513 1268 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
Scn4aQ9ER60 Pdp1-201ENSMUST00000056050 1881 ntAPPRIS P3 TSL 5 BASIC30.19■■■□□ 2.42
Scn4aQ9ER60 Txnrd2-216ENSMUST00000206606 1809 ntTSL 1 (best) BASIC30.18■■■□□ 2.42
Scn4aQ9ER60 Gm10941-201ENSMUST00000105408 708 ntTSL 1 (best) BASIC30.18■■■□□ 2.42
Scn4aQ9ER60 Gm38165-201ENSMUST00000191654 486 ntTSL 1 (best) BASIC30.18■■■□□ 2.42
Scn4aQ9ER60 Mrps33-201ENSMUST00000031978 1107 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
Scn4aQ9ER60 Creb1-204ENSMUST00000185594 1569 ntAPPRIS P1 TSL 5 BASIC30.18■■■□□ 2.42
Scn4aQ9ER60 Wasl-202ENSMUST00000041737 1298 ntTSL 1 (best) BASIC30.17■■■□□ 2.42
Scn4aQ9ER60 Gm5576-201ENSMUST00000075809 1236 ntBASIC30.17■■■□□ 2.42
Scn4aQ9ER60 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC30.17■■■□□ 2.42
Scn4aQ9ER60 Gm15270-201ENSMUST00000125158 870 ntTSL 3 BASIC30.17■■■□□ 2.42
Scn4aQ9ER60 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC30.16■■■□□ 2.42
Scn4aQ9ER60 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC30.16■■■□□ 2.42
Scn4aQ9ER60 Gpx4-202ENSMUST00000105372 959 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
Scn4aQ9ER60 Gm12216-203ENSMUST00000121435 655 ntAPPRIS ALT2 TSL 5 BASIC30.16■■■□□ 2.42
Scn4aQ9ER60 Hrh3-203ENSMUST00000164442 1242 ntAPPRIS ALT2 TSL 5 BASIC30.16■■■□□ 2.42
Scn4aQ9ER60 AC158777.2-201ENSMUST00000228787 398 ntAPPRIS P1 BASIC30.16■■■□□ 2.42
Scn4aQ9ER60 Lgals3-201ENSMUST00000142734 1419 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
Scn4aQ9ER60 Foxo3-202ENSMUST00000105501 1316 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
Scn4aQ9ER60 Zfp629-207ENSMUST00000134446 670 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
Scn4aQ9ER60 Tsc22d1-203ENSMUST00000101618 1043 ntTSL 1 (best) BASIC30.14■■■□□ 2.42
Scn4aQ9ER60 Gm8770-201ENSMUST00000121113 1109 ntBASIC30.14■■■□□ 2.42
Scn4aQ9ER60 Tfg-202ENSMUST00000121554 716 ntAPPRIS ALT2 TSL 5 BASIC30.14■■■□□ 2.42
Scn4aQ9ER60 Nespas-201ENSMUST00000143738 1083 ntBASIC30.14■■■□□ 2.42
Scn4aQ9ER60 Ppp3cc-201ENSMUST00000078434 1970 ntAPPRIS P2 TSL 1 (best) BASIC30.14■■■□□ 2.41
Retrieved 100 of 76,532 protein–RNA pairs in 39.6 ms