Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Cdkn2aipnl-201ENSMUST00000102763 1832 ntAPPRIS P1 TSL 1 (best) BASIC29.48■■■□□ 2.31
Usp40Q8BWR4 Psip1-202ENSMUST00000107214 1973 ntTSL 5 BASIC29.47■■■□□ 2.31
Usp40Q8BWR4 Ankrd11-207ENSMUST00000212937 943 ntTSL 1 (best) BASIC29.47■■■□□ 2.31
Usp40Q8BWR4 Gm9780-202ENSMUST00000184915 1394 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
Usp40Q8BWR4 Kcnc3-203ENSMUST00000207493 2731 ntAPPRIS ALT2 TSL 5 BASIC29.47■■■□□ 2.31
Usp40Q8BWR4 Kcnc3-206ENSMUST00000208651 2728 ntAPPRIS ALT2 TSL 5 BASIC29.47■■■□□ 2.31
Usp40Q8BWR4 Kcnk1-202ENSMUST00000212831 1309 ntTSL 5 BASIC29.46■■■□□ 2.31
Usp40Q8BWR4 Mnx1-202ENSMUST00000165512 2245 ntAPPRIS P2 TSL 1 (best) BASIC29.46■■■□□ 2.31
Usp40Q8BWR4 Cnot6-201ENSMUST00000020624 2498 ntTSL 1 (best) BASIC29.46■■■□□ 2.31
Usp40Q8BWR4 Ikbip-202ENSMUST00000020150 1328 ntAPPRIS P3 TSL 1 (best) BASIC29.45■■■□□ 2.31
Usp40Q8BWR4 Chml-203ENSMUST00000210367 1324 ntTSL 5 BASIC29.45■■■□□ 2.31
Usp40Q8BWR4 Smim19-201ENSMUST00000033935 1402 ntAPPRIS P1 TSL 1 (best) BASIC29.45■■■□□ 2.31
Usp40Q8BWR4 Sucla2-201ENSMUST00000022706 1545 ntAPPRIS P1 TSL 1 (best) BASIC29.45■■■□□ 2.31
Usp40Q8BWR4 Psmd11-214ENSMUST00000173938 1626 ntAPPRIS P1 TSL 1 (best) BASIC29.45■■■□□ 2.31
Usp40Q8BWR4 1810010H24Rik-202ENSMUST00000140447 1677 ntAPPRIS ALT2 TSL 5 BASIC29.45■■■□□ 2.31
Usp40Q8BWR4 C1qtnf4-201ENSMUST00000111466 1290 ntAPPRIS P1 TSL 1 (best) BASIC29.45■■■□□ 2.31
Usp40Q8BWR4 Rexo2-208ENSMUST00000216470 454 ntTSL 3 BASIC29.45■■■□□ 2.31
Usp40Q8BWR4 Sdccag3-201ENSMUST00000028293 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC29.45■■■□□ 2.3
Usp40Q8BWR4 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC29.45■■■□□ 2.3
Usp40Q8BWR4 Wtap-203ENSMUST00000159551 2060 ntAPPRIS P1 TSL 5 BASIC29.44■■■□□ 2.3
Usp40Q8BWR4 Lrrc14-201ENSMUST00000036423 2093 ntAPPRIS P1 TSL 1 (best) BASIC29.44■■■□□ 2.3
Usp40Q8BWR4 Prr3-201ENSMUST00000055454 2727 ntAPPRIS P3 TSL 1 (best) BASIC29.44■■■□□ 2.3
Usp40Q8BWR4 Ost4-202ENSMUST00000132253 1144 ntAPPRIS P1 TSL 1 (best) BASIC29.44■■■□□ 2.3
Usp40Q8BWR4 AC115037.1-201ENSMUST00000223391 2173 ntBASIC29.43■■■□□ 2.3
Usp40Q8BWR4 Tinagl1-209ENSMUST00000175992 1847 ntAPPRIS ALT2 TSL 5 BASIC29.43■■■□□ 2.3
Usp40Q8BWR4 Pkp2-203ENSMUST00000162150 1959 ntTSL 1 (best) BASIC29.43■■■□□ 2.3
Usp40Q8BWR4 Endod1-203ENSMUST00000214236 419 ntAPPRIS ALT2 TSL 3 BASIC29.43■■■□□ 2.3
Usp40Q8BWR4 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC29.43■■■□□ 2.3
Usp40Q8BWR4 Timmdc1-201ENSMUST00000002925 1573 ntAPPRIS P1 TSL 1 (best) BASIC29.43■■■□□ 2.3
Usp40Q8BWR4 Fam204a-201ENSMUST00000065286 2035 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
Usp40Q8BWR4 Dctn3-203ENSMUST00000171641 885 ntTSL 3 BASIC29.42■■■□□ 2.3
Usp40Q8BWR4 Spsb3-202ENSMUST00000068508 2004 ntTSL 1 (best) BASIC29.42■■■□□ 2.3
Usp40Q8BWR4 Ctage5-218ENSMUST00000177162 2728 ntTSL 5 BASIC29.41■■■□□ 2.3
Usp40Q8BWR4 Gm20548-204ENSMUST00000174528 791 ntTSL 3 BASIC29.41■■■□□ 2.3
Usp40Q8BWR4 St3gal5-202ENSMUST00000114112 2439 ntAPPRIS ALT2 TSL 1 (best) BASIC29.41■■■□□ 2.3
Usp40Q8BWR4 Stub1-201ENSMUST00000044911 1672 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
Usp40Q8BWR4 Zfp768-202ENSMUST00000205266 2513 ntAPPRIS ALT2 TSL 5 BASIC29.4■■■□□ 2.3
Usp40Q8BWR4 Slc22a17-201ENSMUST00000050772 2290 ntTSL 1 (best) BASIC29.4■■■□□ 2.3
Usp40Q8BWR4 Stard4-203ENSMUST00000119991 941 ntTSL 5 BASIC29.4■■■□□ 2.3
Usp40Q8BWR4 Sumf1-206ENSMUST00000172188 723 ntTSL 5 BASIC29.4■■■□□ 2.3
Usp40Q8BWR4 Lrrfip2-205ENSMUST00000196981 1839 ntAPPRIS ALT2 TSL 5 BASIC29.4■■■□□ 2.3
Usp40Q8BWR4 Homer2-201ENSMUST00000026922 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC29.4■■■□□ 2.3
Usp40Q8BWR4 Get4-201ENSMUST00000026976 2107 ntAPPRIS P3 TSL 1 (best) BASIC29.39■■■□□ 2.3
Usp40Q8BWR4 Bex1-202ENSMUST00000113118 754 ntAPPRIS P1 TSL 2 BASIC29.39■■■□□ 2.3
Usp40Q8BWR4 Ramp1-202ENSMUST00000165855 852 ntTSL 2 BASIC29.39■■■□□ 2.3
Usp40Q8BWR4 Bag1-201ENSMUST00000030125 1295 ntAPPRIS ALT2 TSL 1 (best) BASIC29.39■■■□□ 2.3
Usp40Q8BWR4 Rem1-201ENSMUST00000000369 1663 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.3
Usp40Q8BWR4 Git2-214ENSMUST00000155908 2338 ntTSL 5 BASIC29.39■■■□□ 2.3
Usp40Q8BWR4 Cd320-201ENSMUST00000002379 2209 ntAPPRIS P3 TSL 1 (best) BASIC29.39■■■□□ 2.29
Usp40Q8BWR4 P4htm-201ENSMUST00000006853 1841 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
Usp40Q8BWR4 Xbp1-201ENSMUST00000063084 2129 ntAPPRIS P2 TSL 1 (best) BASIC29.38■■■□□ 2.29
Usp40Q8BWR4 Ttc14-206ENSMUST00000196975 1711 ntAPPRIS ALT2 TSL 1 (best) BASIC29.38■■■□□ 2.29
Usp40Q8BWR4 A930032L01Rik-201ENSMUST00000195845 957 ntBASIC29.38■■■□□ 2.29
Usp40Q8BWR4 Zfp36l1-204ENSMUST00000219642 545 ntTSL 3 BASIC29.38■■■□□ 2.29
Usp40Q8BWR4 D130020L05Rik-203ENSMUST00000221044 803 ntTSL 2 BASIC29.38■■■□□ 2.29
Usp40Q8BWR4 Sdsl-202ENSMUST00000052258 1225 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
Usp40Q8BWR4 Ndufs2-201ENSMUST00000013737 1623 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
Usp40Q8BWR4 Gnas-206ENSMUST00000109084 1695 ntAPPRIS ALT1 TSL 1 (best) BASIC29.37■■■□□ 2.29
Usp40Q8BWR4 Marc1-201ENSMUST00000048462 2039 ntAPPRIS P2 TSL 1 (best) BASIC29.37■■■□□ 2.29
Usp40Q8BWR4 Pi16-201ENSMUST00000114699 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC29.37■■■□□ 2.29
Usp40Q8BWR4 AC116713.1-201ENSMUST00000215074 430 ntBASIC29.37■■■□□ 2.29
Usp40Q8BWR4 Ccdc74a-201ENSMUST00000056962 1273 ntAPPRIS P1 TSL 5 BASIC29.37■■■□□ 2.29
Usp40Q8BWR4 March2-210ENSMUST00000186022 2470 ntTSL 1 (best) BASIC29.37■■■□□ 2.29
Usp40Q8BWR4 Olfm1-201ENSMUST00000028177 2757 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
Usp40Q8BWR4 Tmem230-202ENSMUST00000110163 1551 ntAPPRIS P1 TSL 3 BASIC29.35■■■□□ 2.29
Usp40Q8BWR4 Msl2-202ENSMUST00000189616 2612 ntTSL 5 BASIC29.35■■■□□ 2.29
Usp40Q8BWR4 1110065P20Rik-206ENSMUST00000185036 1223 ntTSL 2 BASIC29.35■■■□□ 2.29
Usp40Q8BWR4 4930439D14Rik-201ENSMUST00000186765 359 ntBASIC29.35■■■□□ 2.29
Usp40Q8BWR4 AC140930.3-201ENSMUST00000222935 274 ntBASIC29.35■■■□□ 2.29
Usp40Q8BWR4 Vamp4-204ENSMUST00000135241 1461 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
Usp40Q8BWR4 Wrap73-201ENSMUST00000030895 1598 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
Usp40Q8BWR4 Pithd1-201ENSMUST00000105851 1700 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
Usp40Q8BWR4 Grb2-201ENSMUST00000021090 2709 ntAPPRIS P1 TSL 1 (best) BASIC29.33■■■□□ 2.29
Usp40Q8BWR4 Dusp15-202ENSMUST00000109811 753 ntTSL 1 (best) BASIC29.33■■■□□ 2.29
Usp40Q8BWR4 Kiss1-203ENSMUST00000193888 624 ntAPPRIS P1 TSL 2 BASIC29.33■■■□□ 2.29
Usp40Q8BWR4 Gm44866-201ENSMUST00000208774 391 ntTSL 2 BASIC29.33■■■□□ 2.29
Usp40Q8BWR4 Golgb1-201ENSMUST00000023534 498 ntBASIC29.33■■■□□ 2.29
Usp40Q8BWR4 Dgcr6-201ENSMUST00000066027 1050 ntAPPRIS P4 TSL 2 BASIC29.33■■■□□ 2.29
Usp40Q8BWR4 Gng12-202ENSMUST00000114222 1354 ntAPPRIS P1 TSL 1 (best) BASIC29.33■■■□□ 2.29
Usp40Q8BWR4 Tarbp2-201ENSMUST00000023813 1523 ntAPPRIS P1 TSL 1 (best) BASIC29.33■■■□□ 2.29
Usp40Q8BWR4 Eif2b3-203ENSMUST00000106448 1555 ntAPPRIS P1 TSL 5 BASIC29.33■■■□□ 2.29
Usp40Q8BWR4 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC29.33■■■□□ 2.29
Usp40Q8BWR4 Ankrd13c-202ENSMUST00000164582 1735 ntAPPRIS P1 TSL 1 (best) BASIC29.32■■■□□ 2.28
Usp40Q8BWR4 Tpm1-211ENSMUST00000113695 1607 ntTSL 3 BASIC29.32■■■□□ 2.28
Usp40Q8BWR4 Rhod-201ENSMUST00000048197 1344 ntAPPRIS P1 TSL 1 (best) BASIC29.32■■■□□ 2.28
Usp40Q8BWR4 Kansl1l-202ENSMUST00000113987 2342 ntTSL 1 (best) BASIC29.32■■■□□ 2.28
Usp40Q8BWR4 Pax1-201ENSMUST00000109968 2643 ntAPPRIS P1 TSL 1 (best) BASIC29.31■■■□□ 2.28
Usp40Q8BWR4 March8-204ENSMUST00000123405 2102 ntTSL 5 BASIC29.31■■■□□ 2.28
Usp40Q8BWR4 Nle1-201ENSMUST00000103213 1783 ntAPPRIS P1 TSL 1 (best) BASIC29.31■■■□□ 2.28
Usp40Q8BWR4 Hoxa11-201ENSMUST00000048026 2287 ntAPPRIS P1 TSL 1 (best) BASIC29.31■■■□□ 2.28
Usp40Q8BWR4 Dusp1-201ENSMUST00000025025 1990 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.28
Usp40Q8BWR4 Tmem185a-202ENSMUST00000114630 1307 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.28
Usp40Q8BWR4 Kmt5b-201ENSMUST00000005518 1283 ntAPPRIS ALT2 TSL 5 BASIC29.3■■■□□ 2.28
Usp40Q8BWR4 Mast2-203ENSMUST00000106485 5705 ntAPPRIS ALT2 TSL 1 (best) BASIC29.3■■■□□ 2.28
Usp40Q8BWR4 Mast2-204ENSMUST00000106486 5723 ntAPPRIS P4 TSL 1 (best) BASIC29.3■■■□□ 2.28
Usp40Q8BWR4 Gtf2e2-202ENSMUST00000170705 1634 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.28
Usp40Q8BWR4 B430218F22Rik-201ENSMUST00000181168 1495 ntAPPRIS P1 BASIC29.29■■■□□ 2.28
Usp40Q8BWR4 Elf2-203ENSMUST00000108051 2514 ntTSL 1 (best) BASIC29.29■■■□□ 2.28
Usp40Q8BWR4 Ctage5-211ENSMUST00000176322 2649 ntTSL 5 BASIC29.28■■■□□ 2.28
Usp40Q8BWR4 Kcnq5-205ENSMUST00000173058 2472 ntTSL 5 BASIC29.28■■■□□ 2.28
Retrieved 100 of 76,532 protein–RNA pairs in 14.7 ms