Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Btbd6-201ENSMUST00000002880 2057 ntAPPRIS P4 TSL 1 (best) BASIC19.63■□□□□ 0.73
ShhQ62226 Gabbr2-201ENSMUST00000107749 5750 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
ShhQ62226 Fndc4-201ENSMUST00000041266 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
ShhQ62226 Rgs10-205ENSMUST00000145739 564 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
ShhQ62226 Msl2-202ENSMUST00000189616 2612 ntTSL 5 BASIC19.62■□□□□ 0.73
ShhQ62226 Tcte2-210ENSMUST00000148430 1839 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
ShhQ62226 Rell2-211ENSMUST00000176902 1835 ntTSL 5 BASIC19.62■□□□□ 0.73
ShhQ62226 Pwwp2b-202ENSMUST00000172136 2543 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
ShhQ62226 Frmd4a-201ENSMUST00000075767 6761 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
ShhQ62226 Arl5a-201ENSMUST00000036541 5239 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
ShhQ62226 A230087F16Rik-201ENSMUST00000181055 2098 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
ShhQ62226 Tead2-202ENSMUST00000097216 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
ShhQ62226 Dgcr6-207ENSMUST00000151266 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC19.61■□□□□ 0.73
ShhQ62226 Dpy19l1-206ENSMUST00000170356 4715 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
ShhQ62226 Bean1-202ENSMUST00000164076 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
ShhQ62226 Lrp2-202ENSMUST00000092551 2228 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
ShhQ62226 Kcnip2-201ENSMUST00000026247 1203 ntAPPRIS ALT1 TSL 5 BASIC19.6■□□□□ 0.73
ShhQ62226 Pigv-202ENSMUST00000067902 990 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
ShhQ62226 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC19.6■□□□□ 0.73
ShhQ62226 Tifa-202ENSMUST00000163775 1646 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
ShhQ62226 AC115037.1-201ENSMUST00000223391 2173 ntBASIC19.6■□□□□ 0.73
ShhQ62226 Marc1-201ENSMUST00000048462 2039 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
ShhQ62226 Kcnq5-205ENSMUST00000173058 2472 ntTSL 5 BASIC19.59■□□□□ 0.73
ShhQ62226 2700081O15Rik-202ENSMUST00000159348 4989 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
ShhQ62226 Ppp1r14a-202ENSMUST00000207714 755 ntTSL 3 BASIC19.59■□□□□ 0.73
ShhQ62226 Gadd45g-201ENSMUST00000021903 1071 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
ShhQ62226 Hoxb7-201ENSMUST00000049352 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
ShhQ62226 Rabac1-201ENSMUST00000076961 899 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
ShhQ62226 Tmem164-204ENSMUST00000112889 1742 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
ShhQ62226 Pkp2-203ENSMUST00000162150 1959 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
ShhQ62226 Slc35b2-205ENSMUST00000224905 1906 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
ShhQ62226 Get4-201ENSMUST00000026976 2107 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.73
ShhQ62226 Krt72-201ENSMUST00000071104 1951 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.73
ShhQ62226 Ppp1r14a-201ENSMUST00000048187 950 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
ShhQ62226 Stk19-201ENSMUST00000077477 1120 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
ShhQ62226 Usp21-203ENSMUST00000111306 2185 ntAPPRIS ALT1 TSL 1 (best) BASIC19.58■□□□□ 0.72
ShhQ62226 Pbx2-201ENSMUST00000038149 3068 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
ShhQ62226 Nrarp-201ENSMUST00000104999 2582 ntAPPRIS P1 BASIC19.58■□□□□ 0.72
ShhQ62226 Tmem164-205ENSMUST00000112891 1654 ntTSL 5 BASIC19.58■□□□□ 0.72
ShhQ62226 Fam216a-201ENSMUST00000031419 1388 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
ShhQ62226 Slc1a5-201ENSMUST00000108496 2764 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
ShhQ62226 Eri3-201ENSMUST00000037127 1719 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
ShhQ62226 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC19.57■□□□□ 0.72
ShhQ62226 Rhbdl1-201ENSMUST00000026831 1711 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
ShhQ62226 Mrgbp-201ENSMUST00000029085 1510 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
ShhQ62226 Ltk-205ENSMUST00000140224 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
ShhQ62226 Ltk-206ENSMUST00000182203 2232 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
ShhQ62226 Dusp1-201ENSMUST00000025025 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
ShhQ62226 0610010K14Rik-209ENSMUST00000108579 667 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
ShhQ62226 Dynlrb1-204ENSMUST00000150602 788 ntTSL 2 BASIC19.56■□□□□ 0.72
ShhQ62226 Gm21956-201ENSMUST00000179946 522 ntBASIC19.56■□□□□ 0.72
ShhQ62226 Efna3-203ENSMUST00000200436 742 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
ShhQ62226 Rexo2-208ENSMUST00000216470 454 ntTSL 3 BASIC19.56■□□□□ 0.72
ShhQ62226 A030005L19Rik-201ENSMUST00000220768 806 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
ShhQ62226 Pou2f2-204ENSMUST00000108416 1754 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
ShhQ62226 Dhrs13-201ENSMUST00000021187 1779 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
ShhQ62226 Spata6-213ENSMUST00000153746 1444 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
ShhQ62226 Klhdc2-201ENSMUST00000021362 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
ShhQ62226 Mapk12-201ENSMUST00000088827 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
ShhQ62226 Foxj3-206ENSMUST00000138845 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
ShhQ62226 Mettl9-201ENSMUST00000033163 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
ShhQ62226 AC161180.2-201ENSMUST00000222567 1015 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
ShhQ62226 Plekhj1-201ENSMUST00000036805 1260 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
ShhQ62226 Map3k15-201ENSMUST00000033665 4348 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
ShhQ62226 Mlx-201ENSMUST00000017945 1965 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
ShhQ62226 Gtpbp2-201ENSMUST00000024748 2966 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
ShhQ62226 Btbd6-204ENSMUST00000221104 2085 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
ShhQ62226 Mageb3-201ENSMUST00000104936 2341 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
ShhQ62226 Ttc6-201ENSMUST00000101398 1484 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
ShhQ62226 Abhd11-201ENSMUST00000046999 1493 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
ShhQ62226 Habp4-201ENSMUST00000021929 2564 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
ShhQ62226 Hsd11b2-201ENSMUST00000034363 1840 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
ShhQ62226 Nkx6-2-202ENSMUST00000106095 1299 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
ShhQ62226 Pth2-202ENSMUST00000210086 481 ntTSL 2 BASIC19.54■□□□□ 0.72
ShhQ62226 Rcc1l-201ENSMUST00000076228 2321 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
ShhQ62226 Paqr3-203ENSMUST00000112969 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
ShhQ62226 Dmrt3-201ENSMUST00000048935 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
ShhQ62226 1700034H15Rik-201ENSMUST00000069573 1461 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
ShhQ62226 Taf11-202ENSMUST00000114848 2207 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
ShhQ62226 Adora2b-201ENSMUST00000018644 1845 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
ShhQ62226 Aktip-205ENSMUST00000125257 2079 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
ShhQ62226 AC164550.2-201ENSMUST00000219127 2086 ntTSL 5 BASIC19.53■□□□□ 0.72
ShhQ62226 Kras-202ENSMUST00000111710 1194 ntTSL 5 BASIC19.53■□□□□ 0.72
ShhQ62226 Gm35065-201ENSMUST00000199206 428 ntTSL 3 BASIC19.53■□□□□ 0.72
ShhQ62226 Gas2l1-202ENSMUST00000056649 2847 ntAPPRIS P3 TSL 5 BASIC19.53■□□□□ 0.72
ShhQ62226 Gnl1-201ENSMUST00000087200 2848 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
ShhQ62226 Cys1-208ENSMUST00000189849 1828 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
ShhQ62226 Fance-201ENSMUST00000088007 1581 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
ShhQ62226 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
ShhQ62226 Tlk2-202ENSMUST00000092537 2743 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
ShhQ62226 Drd4-201ENSMUST00000026569 2799 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
ShhQ62226 Gm13620-201ENSMUST00000131198 511 ntTSL 3 BASIC19.52■□□□□ 0.72
ShhQ62226 Appbp2os-202ENSMUST00000206972 447 ntBASIC19.52■□□□□ 0.72
ShhQ62226 Mindy2-202ENSMUST00000213380 2521 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.71
ShhQ62226 Eva1b-203ENSMUST00000106152 1364 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
ShhQ62226 Specc1-206ENSMUST00000201015 1789 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
ShhQ62226 Dlx2-201ENSMUST00000024159 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
ShhQ62226 Cadps-204ENSMUST00000177814 5461 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
ShhQ62226 Tmem120b-201ENSMUST00000067505 2164 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
ShhQ62226 Vwc2-201ENSMUST00000056344 1350 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Retrieved 100 of 76,532 protein–RNA pairs in 59.7 ms