Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Gm3448-201ENSMUST00000097399 787 ntAPPRIS P5 TSL 1 (best) BASIC19.44■□□□□ 0.7
Usf1Q61069 Kcnc3-202ENSMUST00000107907 5281 ntAPPRIS P2 TSL 5 BASIC19.44■□□□□ 0.7
Usf1Q61069 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Usf1Q61069 Rem1-201ENSMUST00000000369 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Usf1Q61069 Tbc1d25-203ENSMUST00000143984 2184 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
Usf1Q61069 Gm26646-201ENSMUST00000180715 1490 ntTSL 5 BASIC19.43■□□□□ 0.7
Usf1Q61069 Anp32b-201ENSMUST00000102926 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Usf1Q61069 Naa20-202ENSMUST00000110000 1142 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Usf1Q61069 Nfu1-202ENSMUST00000117583 950 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Usf1Q61069 Serbp1-216ENSMUST00000205106 1288 ntTSL 5 BASIC19.43■□□□□ 0.7
Usf1Q61069 Rbp4-201ENSMUST00000025951 1243 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Usf1Q61069 Gm42699-201ENSMUST00000198104 1657 ntBASIC19.43■□□□□ 0.7
Usf1Q61069 Gm26776-201ENSMUST00000180479 1872 ntTSL 5 BASIC19.42■□□□□ 0.7
Usf1Q61069 Gm12524-201ENSMUST00000143109 1583 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Usf1Q61069 Cdc42bpb-201ENSMUST00000041965 6714 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Usf1Q61069 Gorasp2-205ENSMUST00000133432 1941 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Usf1Q61069 Tusc2-201ENSMUST00000010198 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Usf1Q61069 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Usf1Q61069 Vamp4-204ENSMUST00000135241 1461 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Usf1Q61069 Lipt2-201ENSMUST00000032967 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Usf1Q61069 1810022K09Rik-201ENSMUST00000108365 559 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Usf1Q61069 Kiss1-204ENSMUST00000194044 583 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
Usf1Q61069 Kiss1-205ENSMUST00000195286 656 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Usf1Q61069 Hnrnpl-201ENSMUST00000038572 2142 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Usf1Q61069 Cadps-204ENSMUST00000177814 5461 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
Usf1Q61069 Borcs6-201ENSMUST00000051888 1862 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
Usf1Q61069 Hdac2-201ENSMUST00000019911 2005 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Usf1Q61069 Snta1-201ENSMUST00000028991 2125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Usf1Q61069 Adgrb1-202ENSMUST00000170845 2704 ntTSL 5 BASIC19.4■□□□□ 0.7
Usf1Q61069 Slc16a11-201ENSMUST00000094055 1788 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Usf1Q61069 Cetn4-203ENSMUST00000102955 1064 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Usf1Q61069 Dleu2-211ENSMUST00000183066 788 ntTSL 3 BASIC19.4■□□□□ 0.7
Usf1Q61069 Gm3448-202ENSMUST00000097400 747 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
Usf1Q61069 Pnck-202ENSMUST00000114472 1532 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Usf1Q61069 Timmdc1-201ENSMUST00000002925 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Usf1Q61069 Josd2-211ENSMUST00000134398 563 ntTSL 5 BASIC19.39■□□□□ 0.69
Usf1Q61069 Thap8-201ENSMUST00000014072 1182 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
Usf1Q61069 Epb41l4aos-201ENSMUST00000146010 430 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Usf1Q61069 Rps2-208ENSMUST00000170715 998 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Usf1Q61069 1700051O22Rik-202ENSMUST00000195451 638 ntBASIC19.39■□□□□ 0.69
Usf1Q61069 Gm43137-201ENSMUST00000198052 594 ntBASIC19.39■□□□□ 0.69
Usf1Q61069 Gm21168-201ENSMUST00000199646 1096 ntBASIC19.39■□□□□ 0.69
Usf1Q61069 AC164441.1-202ENSMUST00000223430 442 ntTSL 2 BASIC19.39■□□□□ 0.69
Usf1Q61069 Cyc1-201ENSMUST00000023210 1194 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Usf1Q61069 Sucla2-201ENSMUST00000022706 1545 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Usf1Q61069 Coro1b-201ENSMUST00000008893 1888 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Usf1Q61069 Tgfbrap1-202ENSMUST00000186694 5385 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Usf1Q61069 BC004004-202ENSMUST00000120346 1297 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
Usf1Q61069 Hsd17b3-202ENSMUST00000166224 1286 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
Usf1Q61069 4930467K11Rik-201ENSMUST00000180831 723 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Usf1Q61069 Kcnma1-215ENSMUST00000190339 890 ntTSL 5 BASIC19.38■□□□□ 0.69
Usf1Q61069 Gm9870-201ENSMUST00000063874 645 ntBASIC19.38■□□□□ 0.69
Usf1Q61069 Kctd5-201ENSMUST00000017090 2443 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Usf1Q61069 Porcn-203ENSMUST00000089402 1839 ntAPPRIS ALT1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Usf1Q61069 Prcd-201ENSMUST00000106381 724 ntTSL 3 BASIC19.37■□□□□ 0.69
Usf1Q61069 Gm13790-201ENSMUST00000156209 473 ntTSL 3 BASIC19.37■□□□□ 0.69
Usf1Q61069 Fdx1-201ENSMUST00000034552 875 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Usf1Q61069 Krtap5-5-201ENSMUST00000097942 1177 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
Usf1Q61069 Epop-201ENSMUST00000052281 2314 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
Usf1Q61069 Nrbp2-208ENSMUST00000228366 1863 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
Usf1Q61069 Cblc-202ENSMUST00000108449 1514 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Usf1Q61069 Ubtd1-201ENSMUST00000026170 1527 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Usf1Q61069 Opn3-201ENSMUST00000027809 1913 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Usf1Q61069 AB124611-203ENSMUST00000173769 1188 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
Usf1Q61069 Gm37564-201ENSMUST00000195000 330 ntTSL 5 BASIC19.36■□□□□ 0.69
Usf1Q61069 Fuz-214ENSMUST00000209132 853 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Usf1Q61069 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Usf1Q61069 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Usf1Q61069 4933431K14Rik-201ENSMUST00000195799 1352 ntBASIC19.35■□□□□ 0.69
Usf1Q61069 Mir7075-201ENSMUST00000184187 82 ntBASIC19.35■□□□□ 0.69
Usf1Q61069 Fam181b-201ENSMUST00000051179 2003 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
Usf1Q61069 Ripply3-201ENSMUST00000023660 1531 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Usf1Q61069 Pnkd-204ENSMUST00000113805 740 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Usf1Q61069 Hrh3-203ENSMUST00000164442 1242 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
Usf1Q61069 Gm43017-201ENSMUST00000198296 752 ntBASIC19.34■□□□□ 0.69
Usf1Q61069 Slc39a13-201ENSMUST00000073575 2469 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Usf1Q61069 Spint2-201ENSMUST00000098604 1384 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Usf1Q61069 Dusp28-201ENSMUST00000060913 1314 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Usf1Q61069 Bola1-202ENSMUST00000107099 995 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
Usf1Q61069 Cdkn2a-202ENSMUST00000107131 895 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Usf1Q61069 Wdfy1-202ENSMUST00000113510 704 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Usf1Q61069 Wdfy1-203ENSMUST00000113511 704 ntTSL 5 BASIC19.33■□□□□ 0.68
Usf1Q61069 Paip2-205ENSMUST00000115737 713 ntAPPRIS P1 TSL 3 BASIC19.33■□□□□ 0.68
Usf1Q61069 E130218I03Rik-201ENSMUST00000122952 943 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Usf1Q61069 Bola1-201ENSMUST00000016087 729 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Usf1Q61069 Bola1-203ENSMUST00000177442 692 ntAPPRIS P1 TSL 3 BASIC19.33■□□□□ 0.68
Usf1Q61069 Mrpl2-201ENSMUST00000002844 1031 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
Usf1Q61069 Wdfy1-201ENSMUST00000048820 717 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Usf1Q61069 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Usf1Q61069 Kti12-201ENSMUST00000102738 1629 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
Usf1Q61069 Ctbp1-211ENSMUST00000202868 2436 ntAPPRIS ALT1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Usf1Q61069 Sos2-201ENSMUST00000035773 5607 ntAPPRIS P2 TSL 5 BASIC19.32■□□□□ 0.68
Usf1Q61069 Gm29257-201ENSMUST00000186115 639 ntBASIC19.32■□□□□ 0.68
Usf1Q61069 Selenos-205ENSMUST00000206575 1157 ntAPPRIS ALT1 TSL 2 BASIC19.32■□□□□ 0.68
Usf1Q61069 Auh-204ENSMUST00000120535 1647 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Usf1Q61069 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
Usf1Q61069 Snrpa-201ENSMUST00000080356 1365 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Usf1Q61069 Rnf19b-201ENSMUST00000030584 2414 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
Usf1Q61069 Ankrd9-204ENSMUST00000140788 1451 ntAPPRIS P2 TSL 3 BASIC19.31■□□□□ 0.68
Usf1Q61069 Htra1-201ENSMUST00000006367 2041 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Retrieved 100 of 76,532 protein–RNA pairs in 8.3 ms