Protein–RNA interactions for Protein: P70390

Shox2, Short stature homeobox protein 2, mousemouse

Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shox2P70390 Letm2-201ENSMUST00000079160 2126 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Shox2P70390 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
Shox2P70390 Pcgf6-201ENSMUST00000026032 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Shox2P70390 Nkain2-201ENSMUST00000092602 558 ntBASIC21.02■□□□□ 0.96
Shox2P70390 Gabra5-201ENSMUST00000068456 2671 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Shox2P70390 Rbm34-203ENSMUST00000212618 1509 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Shox2P70390 Zdhhc14-201ENSMUST00000089185 3115 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
Shox2P70390 Stbd1-201ENSMUST00000050952 1985 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Shox2P70390 Celf6-203ENSMUST00000118549 2973 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
Shox2P70390 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Shox2P70390 Mxi1-202ENSMUST00000025998 4996 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Shox2P70390 Cln5-201ENSMUST00000022721 2445 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Shox2P70390 Nkpd1-203ENSMUST00000214205 2309 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
Shox2P70390 C2cd4d-201ENSMUST00000169433 1321 ntAPPRIS P1 TSL 3 BASIC21.01■□□□□ 0.95
Shox2P70390 Triobp-202ENSMUST00000109688 2553 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
Shox2P70390 AC164883.3-201ENSMUST00000227396 1774 ntBASIC21■□□□□ 0.95
Shox2P70390 Pou2f2-206ENSMUST00000108418 1934 ntTSL 1 (best) BASIC21■□□□□ 0.95
Shox2P70390 Zbed3-202ENSMUST00000221807 1945 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Shox2P70390 Gm13889-201ENSMUST00000099689 1386 ntBASIC21■□□□□ 0.95
Shox2P70390 Lzts2-202ENSMUST00000178087 2773 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Shox2P70390 Ppm1b-201ENSMUST00000080217 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
Shox2P70390 Anp32b-201ENSMUST00000102926 1716 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Shox2P70390 Cbfb-201ENSMUST00000052209 2883 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
Shox2P70390 Celf6-201ENSMUST00000034840 2765 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
Shox2P70390 Adssl1-201ENSMUST00000021726 1777 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Shox2P70390 Rnf187-201ENSMUST00000094151 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
Shox2P70390 Vgf-202ENSMUST00000186451 2277 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
Shox2P70390 Lpcat3-201ENSMUST00000004381 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Shox2P70390 Gm9833-201ENSMUST00000061419 1830 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Shox2P70390 8430422M14Rik-201ENSMUST00000199608 822 ntBASIC20.99■□□□□ 0.95
Shox2P70390 AC153911.1-201ENSMUST00000220378 758 ntBASIC20.99■□□□□ 0.95
Shox2P70390 Gm40983-202ENSMUST00000222598 1198 ntTSL 5 BASIC20.99■□□□□ 0.95
Shox2P70390 Tdp2-203ENSMUST00000223804 1136 ntBASIC20.99■□□□□ 0.95
Shox2P70390 Tmem79-202ENSMUST00000107552 2063 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
Shox2P70390 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC20.99■□□□□ 0.95
Shox2P70390 Oser1-201ENSMUST00000046908 1620 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Shox2P70390 Pgam1-201ENSMUST00000011896 1831 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Shox2P70390 2700081O15Rik-202ENSMUST00000159348 4989 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
Shox2P70390 Lrp8-204ENSMUST00000106733 3332 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
Shox2P70390 Cpne2-202ENSMUST00000109537 2121 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Shox2P70390 Gm9934-202ENSMUST00000191246 1713 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Shox2P70390 Cotl1-202ENSMUST00000168698 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Shox2P70390 Zfp777-202ENSMUST00000114583 3111 ntAPPRIS P3 TSL 5 BASIC20.97■□□□□ 0.95
Shox2P70390 Fam83d-201ENSMUST00000029183 2266 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Shox2P70390 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC20.97■□□□□ 0.95
Shox2P70390 4933431K14Rik-201ENSMUST00000195799 1352 ntBASIC20.97■□□□□ 0.95
Shox2P70390 Gab2-202ENSMUST00000206791 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Shox2P70390 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC20.96■□□□□ 0.95
Shox2P70390 Dus1l-209ENSMUST00000167023 1909 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
Shox2P70390 Dus1l-201ENSMUST00000026151 1930 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
Shox2P70390 Klrg2-201ENSMUST00000096030 2276 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
Shox2P70390 Gm9812-201ENSMUST00000061934 968 ntBASIC20.96■□□□□ 0.95
Shox2P70390 Rab28-201ENSMUST00000031011 1635 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Shox2P70390 4430402I18Rik-201ENSMUST00000025872 2152 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Shox2P70390 Pdzd3-201ENSMUST00000034618 2193 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Shox2P70390 Dcbld1-201ENSMUST00000069004 3024 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Shox2P70390 Nek6-202ENSMUST00000112895 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Shox2P70390 Ptf1a-201ENSMUST00000028068 1508 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Shox2P70390 Gjc2-201ENSMUST00000108790 2169 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Shox2P70390 Dnajb2-207ENSMUST00000188290 1855 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Shox2P70390 Ythdf1-201ENSMUST00000037299 3184 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Shox2P70390 Krt76-201ENSMUST00000100179 2312 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Shox2P70390 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Shox2P70390 Acsl6-209ENSMUST00000108904 2594 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Shox2P70390 Donson-203ENSMUST00000117159 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Shox2P70390 D030062O11Rik-201ENSMUST00000192660 2806 ntBASIC20.94■□□□□ 0.94
Shox2P70390 Gm45855-201ENSMUST00000212546 880 ntBASIC20.94■□□□□ 0.94
Shox2P70390 Dnajb2-202ENSMUST00000082158 1253 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
Shox2P70390 Ccr10-201ENSMUST00000062759 1726 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Shox2P70390 Cdk11b-202ENSMUST00000105598 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Shox2P70390 Gm43545-201ENSMUST00000196765 2779 ntBASIC20.94■□□□□ 0.94
Shox2P70390 Hoxb3-201ENSMUST00000055334 1890 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Shox2P70390 Fam118b-201ENSMUST00000059057 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Shox2P70390 Tmie-201ENSMUST00000050958 2802 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Shox2P70390 Zyg11a-202ENSMUST00000106690 2421 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
Shox2P70390 AC152827.1-201ENSMUST00000221143 2189 ntBASIC20.93■□□□□ 0.94
Shox2P70390 Mbd3-201ENSMUST00000092295 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Shox2P70390 Rell2-201ENSMUST00000070709 1767 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Shox2P70390 Fam207a-201ENSMUST00000045454 2394 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Shox2P70390 Rfk-201ENSMUST00000025617 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Shox2P70390 Cnot6-203ENSMUST00000145353 5736 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
Shox2P70390 Fam193b-201ENSMUST00000021957 4341 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Shox2P70390 Cmas-201ENSMUST00000032419 1760 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Shox2P70390 Gm8093-201ENSMUST00000128935 1892 ntBASIC20.92■□□□□ 0.94
Shox2P70390 Dedd2-202ENSMUST00000205271 1942 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
Shox2P70390 Kndc1-202ENSMUST00000121839 2210 ntTSL 2 BASIC20.92■□□□□ 0.94
Shox2P70390 Lemd3-202ENSMUST00000119944 4743 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Shox2P70390 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Shox2P70390 Ccng2-201ENSMUST00000031331 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Shox2P70390 Fam105a-201ENSMUST00000100739 2867 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Shox2P70390 Gm44949-201ENSMUST00000206423 1450 ntBASIC20.92■□□□□ 0.94
Shox2P70390 Glrb-201ENSMUST00000029654 3029 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Shox2P70390 Fah-201ENSMUST00000032865 1585 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Shox2P70390 Cradd-205ENSMUST00000220279 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Shox2P70390 Pdcd2-205ENSMUST00000154293 1924 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Shox2P70390 Ubxn2a-203ENSMUST00000142867 2146 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Shox2P70390 Ppp1r16a-201ENSMUST00000037551 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Shox2P70390 Ksr1-202ENSMUST00000108264 2748 ntTSL 5 BASIC20.91■□□□□ 0.94
Shox2P70390 AI846148-201ENSMUST00000025924 3183 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Shox2P70390 Nrg3-203ENSMUST00000173780 2137 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
Retrieved 100 of 76,532 protein–RNA pairs in 40.6 ms