Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Smurf2-202ENSMUST00000103067 5290 ntTSL 5 BASIC19.99■□□□□ 0.79
Msx1P13297 March9-201ENSMUST00000040307 3037 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Msx1P13297 Gm9748-202ENSMUST00000194881 783 ntTSL 2 BASIC19.99■□□□□ 0.79
Msx1P13297 Klhdc2-201ENSMUST00000021362 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Msx1P13297 Nrbp2-208ENSMUST00000228366 1863 ntAPPRIS P1 BASIC19.99■□□□□ 0.79
Msx1P13297 Mapk15-201ENSMUST00000089669 1929 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Msx1P13297 Krt72-201ENSMUST00000071104 1951 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
Msx1P13297 Gm10653-201ENSMUST00000132250 1232 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Msx1P13297 Ankra2-205ENSMUST00000150916 1028 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Msx1P13297 Gm10653-203ENSMUST00000156423 1232 ntTSL 5 BASIC19.98■□□□□ 0.79
Msx1P13297 Gm44866-201ENSMUST00000208774 391 ntTSL 2 BASIC19.98■□□□□ 0.79
Msx1P13297 Lyar-201ENSMUST00000087514 1563 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Msx1P13297 Ctage5-203ENSMUST00000170992 2785 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Msx1P13297 Fam241b-203ENSMUST00000124615 1493 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Msx1P13297 Klc1-201ENSMUST00000084941 2504 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
Msx1P13297 Cys1-208ENSMUST00000189849 1828 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Msx1P13297 Ptf1a-201ENSMUST00000028068 1508 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Msx1P13297 Rcc1l-201ENSMUST00000076228 2321 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Msx1P13297 Dnajb2-207ENSMUST00000188290 1855 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Msx1P13297 Tusc3-202ENSMUST00000169034 1262 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Msx1P13297 Tor2a-208ENSMUST00000177382 396 ntTSL 5 BASIC19.97■□□□□ 0.79
Msx1P13297 A030005L19Rik-201ENSMUST00000220768 806 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
Msx1P13297 Btbd6-206ENSMUST00000222209 644 ntTSL 3 BASIC19.97■□□□□ 0.79
Msx1P13297 Tmem185a-202ENSMUST00000114630 1307 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Msx1P13297 Ppp1cc-202ENSMUST00000102528 2384 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Msx1P13297 Ppm1g-205ENSMUST00000202294 1868 ntTSL 5 BASIC19.96■□□□□ 0.79
Msx1P13297 Carm1-201ENSMUST00000034703 3220 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
Msx1P13297 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
Msx1P13297 AC161180.2-201ENSMUST00000222567 1015 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
Msx1P13297 Jtb-201ENSMUST00000029546 1101 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Msx1P13297 Kcnq5-206ENSMUST00000173404 2775 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
Msx1P13297 Abhd17b-201ENSMUST00000052556 2475 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
Msx1P13297 Dmrt3-201ENSMUST00000048935 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Msx1P13297 Foxo6-201ENSMUST00000102656 2615 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Msx1P13297 Hsd11b2-201ENSMUST00000034363 1840 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Msx1P13297 Kat2b-201ENSMUST00000000724 4653 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Msx1P13297 Btbd6-204ENSMUST00000221104 2085 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Msx1P13297 Nkx6-2-202ENSMUST00000106095 1299 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Msx1P13297 Ppp1r12b-203ENSMUST00000112163 828 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Msx1P13297 Gm11614-201ENSMUST00000137598 736 ntTSL 5 BASIC19.95■□□□□ 0.78
Msx1P13297 Dbp-203ENSMUST00000211357 1252 ntTSL 5 BASIC19.95■□□□□ 0.78
Msx1P13297 Zfp36l1-204ENSMUST00000219642 545 ntTSL 3 BASIC19.95■□□□□ 0.78
Msx1P13297 Map1lc3a-201ENSMUST00000029128 1112 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Msx1P13297 Hoxb7-201ENSMUST00000049352 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Msx1P13297 Fam96b-201ENSMUST00000093234 639 ntTSL 5 BASIC19.95■□□□□ 0.78
Msx1P13297 Hnrnpab-202ENSMUST00000101249 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Msx1P13297 Pgbd5-204ENSMUST00000140012 3222 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
Msx1P13297 Btbd6-201ENSMUST00000002880 2057 ntAPPRIS P4 TSL 1 (best) BASIC19.95■□□□□ 0.78
Msx1P13297 Tmem230-201ENSMUST00000028816 1612 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Msx1P13297 Hmg20b-202ENSMUST00000105323 1463 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Msx1P13297 Ubtf-210ENSMUST00000174302 4692 ntAPPRIS P3 TSL 5 BASIC19.94■□□□□ 0.78
Msx1P13297 Ccnh-201ENSMUST00000022030 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Msx1P13297 Spata5l1-202ENSMUST00000152813 1526 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Msx1P13297 Nnat-207ENSMUST00000173041 760 ntTSL 5 BASIC19.94■□□□□ 0.78
Msx1P13297 Gm21956-201ENSMUST00000179946 522 ntBASIC19.94■□□□□ 0.78
Msx1P13297 Gm46212-201ENSMUST00000220256 1003 ntTSL 5 BASIC19.94■□□□□ 0.78
Msx1P13297 Ing2-201ENSMUST00000080353 2812 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Msx1P13297 Cdkn2aipnl-201ENSMUST00000102763 1832 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Msx1P13297 Akt1s1-201ENSMUST00000054343 1592 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
Msx1P13297 Rmdn2-208ENSMUST00000225357 2118 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
Msx1P13297 AC115037.1-201ENSMUST00000223391 2173 ntBASIC19.94■□□□□ 0.78
Msx1P13297 B4galt1-202ENSMUST00000108096 1413 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Msx1P13297 Ttc14-206ENSMUST00000196975 1711 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
Msx1P13297 March2-210ENSMUST00000186022 2470 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Msx1P13297 Knstrn-202ENSMUST00000110842 925 ntAPPRIS ALT2 TSL 3 BASIC19.93■□□□□ 0.78
Msx1P13297 C1qtnf4-201ENSMUST00000111466 1290 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Msx1P13297 Gm22238-201ENSMUST00000175222 88 ntBASIC19.93■□□□□ 0.78
Msx1P13297 Gm5297-201ENSMUST00000198555 1171 ntBASIC19.93■□□□□ 0.78
Msx1P13297 Fndc4-201ENSMUST00000041266 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Msx1P13297 AC164550.2-201ENSMUST00000219127 2086 ntTSL 5 BASIC19.93■□□□□ 0.78
Msx1P13297 Gm5602-201ENSMUST00000146366 1763 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Msx1P13297 Apcdd1-201ENSMUST00000096554 2799 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Msx1P13297 0610010K14Rik-209ENSMUST00000108579 667 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Msx1P13297 1700020G03Rik-201ENSMUST00000211264 889 ntBASIC19.92■□□□□ 0.78
Msx1P13297 Specc1-206ENSMUST00000201015 1789 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
Msx1P13297 Atf5-201ENSMUST00000047356 1816 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Msx1P13297 Mageb3-201ENSMUST00000104936 2341 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
Msx1P13297 Slc30a1-201ENSMUST00000044954 5244 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Msx1P13297 Fance-201ENSMUST00000088007 1581 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
Msx1P13297 Lypla2-201ENSMUST00000067567 1626 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Msx1P13297 Phactr2-202ENSMUST00000105543 2735 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Msx1P13297 Fbxw2-204ENSMUST00000113077 1670 ntTSL 5 BASIC19.91■□□□□ 0.78
Msx1P13297 Msrb1-201ENSMUST00000101800 1211 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Msx1P13297 A730035I17Rik-205ENSMUST00000205851 684 ntBASIC19.91■□□□□ 0.78
Msx1P13297 Fam89b-201ENSMUST00000099955 1197 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Msx1P13297 Brf1-201ENSMUST00000011302 2615 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
Msx1P13297 Rhou-201ENSMUST00000045487 3371 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Msx1P13297 Rbfa-201ENSMUST00000025462 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Msx1P13297 Fam216a-201ENSMUST00000031419 1388 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Msx1P13297 Prss50-201ENSMUST00000051097 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Msx1P13297 Gm9934-202ENSMUST00000191246 1713 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Msx1P13297 Aktip-205ENSMUST00000125257 2079 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Msx1P13297 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
Msx1P13297 Ube2k-204ENSMUST00000201292 1529 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Msx1P13297 Dnajc19-203ENSMUST00000117223 1695 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Msx1P13297 Msl1-203ENSMUST00000107485 2091 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Msx1P13297 Anp32b-201ENSMUST00000102926 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Msx1P13297 Tusc3-201ENSMUST00000167992 1511 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Msx1P13297 Xpa-202ENSMUST00000058232 1241 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
Msx1P13297 Lrp2-202ENSMUST00000092551 2228 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Retrieved 100 of 76,532 protein–RNA pairs in 77.7 ms