Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 As3mt-201ENSMUST00000003655 1751 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Trim3Q9R1R2 Pcdhb22-202ENSMUST00000192409 6609 ntAPPRIS P1 BASIC12.21□□□□□ -0.45
Trim3Q9R1R2 Prss45-201ENSMUST00000011391 1232 ntAPPRIS P2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Trim3Q9R1R2 Rpl17-ps5-201ENSMUST00000121001 555 ntBASIC12.21□□□□□ -0.45
Trim3Q9R1R2 Rsf1os2-203ENSMUST00000155074 998 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Trim3Q9R1R2 BC023719-201ENSMUST00000174728 978 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Trim3Q9R1R2 Gm43240-201ENSMUST00000198543 630 ntTSL 3 BASIC12.21□□□□□ -0.45
Trim3Q9R1R2 Gm7067-201ENSMUST00000207698 1249 ntBASIC12.21□□□□□ -0.45
Trim3Q9R1R2 Atp5d-201ENSMUST00000003156 931 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Trim3Q9R1R2 Csrp3-201ENSMUST00000032658 877 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Trim3Q9R1R2 Haus7-202ENSMUST00000077243 1032 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Trim3Q9R1R2 Drc1-201ENSMUST00000101448 2471 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Trim3Q9R1R2 Begain-204ENSMUST00000209829 3272 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.45
Trim3Q9R1R2 Atp5f1-201ENSMUST00000118209 1604 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.46
Trim3Q9R1R2 Aqr-201ENSMUST00000043160 4888 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.46
Trim3Q9R1R2 Dag1-204ENSMUST00000191899 5662 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Trim3Q9R1R2 E130308A19Rik-201ENSMUST00000052420 3205 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
Trim3Q9R1R2 Camsap3-202ENSMUST00000171962 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.46
Trim3Q9R1R2 Cyb561d1-202ENSMUST00000106654 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Trim3Q9R1R2 Snx14-207ENSMUST00000174806 3082 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.46
Trim3Q9R1R2 Ano1-201ENSMUST00000033393 4585 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.46
Trim3Q9R1R2 Smc5-202ENSMUST00000223934 3448 ntAPPRIS P2 BASIC12.21□□□□□ -0.46
Trim3Q9R1R2 Bckdha-201ENSMUST00000071329 1899 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Trim3Q9R1R2 Pomgnt1-201ENSMUST00000106494 2226 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
Trim3Q9R1R2 Klc2-204ENSMUST00000116563 3169 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Trim3Q9R1R2 Kif3b-201ENSMUST00000028977 5635 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Trim3Q9R1R2 Phrf1-201ENSMUST00000106027 5248 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
Trim3Q9R1R2 Cavin1-201ENSMUST00000060792 3491 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Trim3Q9R1R2 Gm16278-201ENSMUST00000148064 2071 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Trim3Q9R1R2 BB123696-201ENSMUST00000222580 2056 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Trim3Q9R1R2 Creld2-201ENSMUST00000024042 1364 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Trim3Q9R1R2 Samd5-201ENSMUST00000100070 6818 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Trim3Q9R1R2 Camta1-201ENSMUST00000049790 8423 ntAPPRIS P2 TSL 5 BASIC12.2□□□□□ -0.46
Trim3Q9R1R2 Arhgef2-201ENSMUST00000029694 4300 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
Trim3Q9R1R2 4933415J04Rik-201ENSMUST00000195895 1301 ntBASIC12.2□□□□□ -0.46
Trim3Q9R1R2 Metap1d-201ENSMUST00000037210 1321 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Trim3Q9R1R2 Nars-201ENSMUST00000025483 2632 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Trim3Q9R1R2 Mrvi1-201ENSMUST00000005751 6198 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
Trim3Q9R1R2 Gm16582-201ENSMUST00000159627 1930 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Trim3Q9R1R2 Def8-203ENSMUST00000093049 1909 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Trim3Q9R1R2 Insrr-201ENSMUST00000029711 5102 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Trim3Q9R1R2 Ggt6-203ENSMUST00000108499 874 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Trim3Q9R1R2 Mup-ps23-201ENSMUST00000118063 630 ntBASIC12.2□□□□□ -0.46
Trim3Q9R1R2 Gm13612-201ENSMUST00000119276 390 ntBASIC12.2□□□□□ -0.46
Trim3Q9R1R2 Med28-203ENSMUST00000119579 636 ntTSL 3 BASIC12.2□□□□□ -0.46
Trim3Q9R1R2 St6galnac6-209ENSMUST00000131229 1013 ntTSL 2 BASIC12.2□□□□□ -0.46
Trim3Q9R1R2 Mthfsd-206ENSMUST00000133037 1060 ntTSL 5 BASIC12.2□□□□□ -0.46
Trim3Q9R1R2 Gm11684-201ENSMUST00000144975 757 ntTSL 5 BASIC12.2□□□□□ -0.46
Trim3Q9R1R2 Nat8f4-202ENSMUST00000159755 1129 ntTSL 2 BASIC12.2□□□□□ -0.46
Trim3Q9R1R2 Vhl-ps1-201ENSMUST00000174813 597 ntBASIC12.2□□□□□ -0.46
Trim3Q9R1R2 Tm2d3-207ENSMUST00000206517 905 ntAPPRIS ALT2 TSL 5 BASIC12.2□□□□□ -0.46
Trim3Q9R1R2 Gm18473-201ENSMUST00000220543 868 ntBASIC12.2□□□□□ -0.46
Trim3Q9R1R2 Rdh5-201ENSMUST00000026406 1258 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Trim3Q9R1R2 Mrps17-201ENSMUST00000042191 832 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Trim3Q9R1R2 Akr1b7-201ENSMUST00000007449 1281 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Trim3Q9R1R2 Ppil3-201ENSMUST00000081677 896 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Trim3Q9R1R2 Gm20700-201ENSMUST00000176749 2206 ntTSL 3 BASIC12.2□□□□□ -0.46
Trim3Q9R1R2 Apol7e-201ENSMUST00000096358 2227 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Trim3Q9R1R2 Myadm-203ENSMUST00000203328 1899 ntAPPRIS P1 TSL 2 BASIC12.2□□□□□ -0.46
Trim3Q9R1R2 Afap1l1-201ENSMUST00000120472 3444 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Trim3Q9R1R2 Atp6ap1-202ENSMUST00000114171 2157 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Trim3Q9R1R2 Prkar1b-202ENSMUST00000110889 2457 ntTSL 5 BASIC12.2□□□□□ -0.46
Trim3Q9R1R2 Enpp5-203ENSMUST00000154166 2490 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Trim3Q9R1R2 Kir3dl1-202ENSMUST00000113105 1544 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Trim3Q9R1R2 Glipr2-202ENSMUST00000107855 1816 ntTSL 2 BASIC12.2□□□□□ -0.46
Trim3Q9R1R2 Neu2-204ENSMUST00000165109 1824 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
Trim3Q9R1R2 Hoxd10-201ENSMUST00000061745 1816 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Trim3Q9R1R2 Hnrnpk-232ENSMUST00000225674 2704 ntBASIC12.2□□□□□ -0.46
Trim3Q9R1R2 Arhgap35-202ENSMUST00000171937 6251 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
Trim3Q9R1R2 Mtch2-211ENSMUST00000150232 2377 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Trim3Q9R1R2 Pik3r1-202ENSMUST00000055518 7113 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Trim3Q9R1R2 Nfe2-207ENSMUST00000134554 1761 ntAPPRIS P1 TSL 2 BASIC12.2□□□□□ -0.46
Trim3Q9R1R2 Rapsn-202ENSMUST00000111445 1450 ntTSL 5 BASIC12.2□□□□□ -0.46
Trim3Q9R1R2 Ints1-210ENSMUST00000200393 7070 ntAPPRIS P2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Trim3Q9R1R2 Nxf1-211ENSMUST00000184970 5591 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Trim3Q9R1R2 Gm26747-201ENSMUST00000180597 1716 ntTSL 5 BASIC12.2□□□□□ -0.46
Trim3Q9R1R2 Phyh-201ENSMUST00000027975 1438 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Trim3Q9R1R2 St6gal1-201ENSMUST00000023601 4506 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Trim3Q9R1R2 Rp2-202ENSMUST00000115387 4498 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Trim3Q9R1R2 Hacd2-201ENSMUST00000061156 3603 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Trim3Q9R1R2 Satb2-202ENSMUST00000114415 5805 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Trim3Q9R1R2 Gm15459-201ENSMUST00000117405 1941 ntBASIC12.19□□□□□ -0.46
Trim3Q9R1R2 Elp4-202ENSMUST00000122965 3048 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Trim3Q9R1R2 Gm8355-201ENSMUST00000177767 1941 ntBASIC12.19□□□□□ -0.46
Trim3Q9R1R2 Rgs6-204ENSMUST00000185674 1362 ntTSL 5 BASIC12.19□□□□□ -0.46
Trim3Q9R1R2 Slitrk3-201ENSMUST00000059407 3587 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Trim3Q9R1R2 Parp16-201ENSMUST00000069000 2482 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Trim3Q9R1R2 Lrpprc-201ENSMUST00000112308 4393 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Trim3Q9R1R2 Ubr7-201ENSMUST00000046404 3261 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Trim3Q9R1R2 Eme1-201ENSMUST00000039949 2444 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Trim3Q9R1R2 Usf1-207ENSMUST00000160486 1878 ntTSL 2 BASIC12.19□□□□□ -0.46
Trim3Q9R1R2 Cap2-201ENSMUST00000021802 3713 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Trim3Q9R1R2 Ssh1-202ENSMUST00000112298 5584 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Trim3Q9R1R2 Rnf44-218ENSMUST00000177950 3941 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Trim3Q9R1R2 Gm5939-201ENSMUST00000119613 2874 ntBASIC12.19□□□□□ -0.46
Trim3Q9R1R2 Ephb3-201ENSMUST00000006112 4185 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Trim3Q9R1R2 Ppp6r1-201ENSMUST00000064099 3862 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Trim3Q9R1R2 Ankzf1-201ENSMUST00000127625 1167 ntTSL 5 BASIC12.19□□□□□ -0.46
Trim3Q9R1R2 Gm16194-204ENSMUST00000141797 475 ntTSL 3 BASIC12.19□□□□□ -0.46
Trim3Q9R1R2 4930407G08Rik-201ENSMUST00000145831 698 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Retrieved 100 of 76,532 protein–RNA pairs in 59.9 ms