Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Gm9025-201ENSMUST00000122415 1575 ntBASIC17.15■□□□□ 0.34
Scn4aQ9ER60 AC113060.1-201ENSMUST00000225689 1573 ntBASIC17.15■□□□□ 0.34
Scn4aQ9ER60 Eps8-203ENSMUST00000111878 3560 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Scn4aQ9ER60 Abhd14b-207ENSMUST00000213179 1627 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
Scn4aQ9ER60 1700021J08Rik-201ENSMUST00000138729 575 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Scn4aQ9ER60 Gm11634-201ENSMUST00000154147 755 ntAPPRIS ALT2 TSL 3 BASIC17.15■□□□□ 0.34
Scn4aQ9ER60 Gm4811-201ENSMUST00000220879 1220 ntBASIC17.15■□□□□ 0.34
Scn4aQ9ER60 AC154759.1-201ENSMUST00000224137 1159 ntBASIC17.15■□□□□ 0.34
Scn4aQ9ER60 H2-T10-201ENSMUST00000166442 1481 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
Scn4aQ9ER60 Spdye4a-203ENSMUST00000195900 1496 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
Scn4aQ9ER60 Gm28230-201ENSMUST00000053932 3527 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Scn4aQ9ER60 Pkp4-210ENSMUST00000168631 4484 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Scn4aQ9ER60 Slc20a2-201ENSMUST00000067786 3566 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Scn4aQ9ER60 Ryr2-203ENSMUST00000220597 4924 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Scn4aQ9ER60 Wnt11-201ENSMUST00000067495 3451 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
Scn4aQ9ER60 Otud5-201ENSMUST00000033494 4259 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
Scn4aQ9ER60 Gm44913-201ENSMUST00000208060 2990 ntBASIC17.15■□□□□ 0.34
Scn4aQ9ER60 Zfp36l1-201ENSMUST00000021552 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Scn4aQ9ER60 Slc40a1-201ENSMUST00000027137 3370 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Scn4aQ9ER60 Gm9881-201ENSMUST00000068783 3205 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
Scn4aQ9ER60 Aldh1a2-201ENSMUST00000034723 2264 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Scn4aQ9ER60 Ces1h-201ENSMUST00000145041 1870 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
Scn4aQ9ER60 Gm23272-201ENSMUST00000104053 129 ntBASIC17.14■□□□□ 0.34
Scn4aQ9ER60 Gm13707-201ENSMUST00000123663 600 ntTSL 1 (best) BASIC17.14■□□□□ 0.34
Scn4aQ9ER60 Gm13166-201ENSMUST00000123828 940 ntTSL 5 BASIC17.14■□□□□ 0.34
Scn4aQ9ER60 Gm15976-201ENSMUST00000129701 429 ntTSL 3 BASIC17.14■□□□□ 0.34
Scn4aQ9ER60 Gm13236-201ENSMUST00000153010 940 ntTSL 5 BASIC17.14■□□□□ 0.34
Scn4aQ9ER60 Gm7069-201ENSMUST00000182418 1008 ntBASIC17.14■□□□□ 0.34
Scn4aQ9ER60 Gm8956-201ENSMUST00000203939 825 ntBASIC17.14■□□□□ 0.34
Scn4aQ9ER60 Cmtm2a-203ENSMUST00000212492 635 ntAPPRIS ALT2 TSL 3 BASIC17.14■□□□□ 0.34
Scn4aQ9ER60 Tcf25-210ENSMUST00000212880 827 ntTSL 1 (best) BASIC17.14■□□□□ 0.34
Scn4aQ9ER60 Ebi3-201ENSMUST00000003274 1170 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
Scn4aQ9ER60 Cpsf7-201ENSMUST00000038379 3604 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
Scn4aQ9ER60 Prrxl1-202ENSMUST00000186452 2371 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
Scn4aQ9ER60 Haus5-201ENSMUST00000019697 2187 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Scn4aQ9ER60 Parp3-202ENSMUST00000112479 2030 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Scn4aQ9ER60 Mdm1-202ENSMUST00000163238 2461 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Scn4aQ9ER60 Ddx55-202ENSMUST00000111438 2737 ntTSL 2 BASIC17.14■□□□□ 0.33
Scn4aQ9ER60 Fbxl19-201ENSMUST00000033081 3410 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Scn4aQ9ER60 Zfyve9-202ENSMUST00000106657 6459 ntAPPRIS P2 TSL 5 BASIC17.14■□□□□ 0.33
Scn4aQ9ER60 Iffo1-202ENSMUST00000119527 2840 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Scn4aQ9ER60 Lrch3-201ENSMUST00000023491 5536 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
Scn4aQ9ER60 Zfp422-202ENSMUST00000079749 3187 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Scn4aQ9ER60 Hsd17b11-202ENSMUST00000119025 2234 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Scn4aQ9ER60 Cebpg-202ENSMUST00000130491 4709 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Scn4aQ9ER60 Apol9b-201ENSMUST00000109775 1545 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Scn4aQ9ER60 Gm21964-203ENSMUST00000219454 1513 ntAPPRIS P5 TSL 5 BASIC17.14■□□□□ 0.33
Scn4aQ9ER60 Gm25053-201ENSMUST00000103982 133 ntBASIC17.14■□□□□ 0.33
Scn4aQ9ER60 Gm25922-201ENSMUST00000104281 130 ntBASIC17.14■□□□□ 0.33
Scn4aQ9ER60 S100a3-201ENSMUST00000001047 712 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Scn4aQ9ER60 Gm12663-201ENSMUST00000118481 958 ntBASIC17.14■□□□□ 0.33
Scn4aQ9ER60 Rpl9-ps7-201ENSMUST00000140507 579 ntBASIC17.14■□□□□ 0.33
Scn4aQ9ER60 Gm24679-201ENSMUST00000158762 111 ntBASIC17.14■□□□□ 0.33
Scn4aQ9ER60 Gm17214-201ENSMUST00000164501 541 ntBASIC17.14■□□□□ 0.33
Scn4aQ9ER60 Mir6973a-201ENSMUST00000183646 78 ntBASIC17.14■□□□□ 0.33
Scn4aQ9ER60 Gm42430-201ENSMUST00000197209 616 ntBASIC17.14■□□□□ 0.33
Scn4aQ9ER60 Gm25053-202ENSMUST00000199731 132 ntBASIC17.14■□□□□ 0.33
Scn4aQ9ER60 Gm7082-201ENSMUST00000209880 969 ntBASIC17.14■□□□□ 0.33
Scn4aQ9ER60 AC158523.3-201ENSMUST00000220664 864 ntTSL 5 BASIC17.14■□□□□ 0.33
Scn4aQ9ER60 AC105408.1-201ENSMUST00000227771 802 ntBASIC17.14■□□□□ 0.33
Scn4aQ9ER60 Rpl9-ps4-201ENSMUST00000075549 579 ntBASIC17.14■□□□□ 0.33
Scn4aQ9ER60 Gm2174-201ENSMUST00000079663 402 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
Scn4aQ9ER60 Gm5451-201ENSMUST00000080545 579 ntBASIC17.14■□□□□ 0.33
Scn4aQ9ER60 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC17.14■□□□□ 0.33
Scn4aQ9ER60 Fbxl12-202ENSMUST00000086459 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Scn4aQ9ER60 Elf2-201ENSMUST00000062009 3353 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Scn4aQ9ER60 Foxc2-201ENSMUST00000054691 2725 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
Scn4aQ9ER60 Tmem229b-201ENSMUST00000056660 3860 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Scn4aQ9ER60 Rbm15b-201ENSMUST00000055843 6511 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
Scn4aQ9ER60 Serpina11-201ENSMUST00000074693 1447 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
Scn4aQ9ER60 Gm18798-201ENSMUST00000187264 1700 ntBASIC17.13■□□□□ 0.33
Scn4aQ9ER60 Cpne6-202ENSMUST00000163767 2004 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
Scn4aQ9ER60 4930588G17Rik-201ENSMUST00000208075 1474 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Scn4aQ9ER60 Ppp6r1-201ENSMUST00000064099 3862 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Scn4aQ9ER60 Gls-204ENSMUST00000114513 4966 ntAPPRIS P3 TSL 5 BASIC17.13■□□□□ 0.33
Scn4aQ9ER60 1700011M02Rik-201ENSMUST00000113602 420 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Scn4aQ9ER60 4931406G06Rik-201ENSMUST00000147848 1252 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Scn4aQ9ER60 Itgb1bp1-202ENSMUST00000172834 801 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Scn4aQ9ER60 Gm8888-201ENSMUST00000177677 381 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
Scn4aQ9ER60 Gm21844-201ENSMUST00000178699 663 ntTSL 3 BASIC17.13■□□□□ 0.33
Scn4aQ9ER60 AC164618.2-201ENSMUST00000224770 573 ntBASIC17.13■□□□□ 0.33
Scn4aQ9ER60 Rhox8-201ENSMUST00000071885 1204 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Scn4aQ9ER60 March8-202ENSMUST00000101032 4611 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Scn4aQ9ER60 Ggnbp2-213ENSMUST00000172405 2950 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Scn4aQ9ER60 Zbtb9-201ENSMUST00000120016 2798 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Scn4aQ9ER60 Msi1-208ENSMUST00000150779 3133 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Scn4aQ9ER60 Trpc1-204ENSMUST00000189137 4559 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
Scn4aQ9ER60 Smarcc1-204ENSMUST00000197984 3538 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Scn4aQ9ER60 Fbxo15-201ENSMUST00000037718 1437 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Scn4aQ9ER60 Cobll1-205ENSMUST00000112431 5024 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Scn4aQ9ER60 Bid-201ENSMUST00000004560 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Scn4aQ9ER60 Triml2-201ENSMUST00000163869 1467 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
Scn4aQ9ER60 Armc7-201ENSMUST00000035240 2260 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Scn4aQ9ER60 Gm2721-201ENSMUST00000222380 1571 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Scn4aQ9ER60 Chd5-202ENSMUST00000030775 9486 ntAPPRIS P3 TSL 5 BASIC17.13■□□□□ 0.33
Scn4aQ9ER60 Hhipl1-201ENSMUST00000021685 5174 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Scn4aQ9ER60 Dcp1b-202ENSMUST00000112777 3313 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Scn4aQ9ER60 Nr2f2-202ENSMUST00000089565 1664 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Scn4aQ9ER60 Gm15620-201ENSMUST00000122949 270 ntBASIC17.12■□□□□ 0.33
Scn4aQ9ER60 Gm16167-201ENSMUST00000160428 1065 ntBASIC17.12■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 44.2 ms