Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Evc2-201ENSMUST00000056365 4091 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Cdc40Q9DC48 Rgs6-204ENSMUST00000185674 1362 ntTSL 5 BASIC12.05□□□□□ -0.48
Cdc40Q9DC48 Gm9755-201ENSMUST00000032981 1356 ntBASIC12.05□□□□□ -0.48
Cdc40Q9DC48 Kif3b-201ENSMUST00000028977 5635 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Cdc40Q9DC48 1500009C09Rik-202ENSMUST00000143238 1552 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Cdc40Q9DC48 Pef1-201ENSMUST00000030563 1551 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Cdc40Q9DC48 Pcdh8-201ENSMUST00000039568 4000 ntAPPRIS P3 TSL 1 (best) BASIC12.05□□□□□ -0.48
Cdc40Q9DC48 Rhbdd2-201ENSMUST00000043707 4207 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Cdc40Q9DC48 Sfpq-201ENSMUST00000030623 3465 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Cdc40Q9DC48 Trip4-201ENSMUST00000117083 1999 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Cdc40Q9DC48 Gm13075-202ENSMUST00000149247 1621 ntTSL 5 BASIC12.05□□□□□ -0.48
Cdc40Q9DC48 Slc25a15-201ENSMUST00000033871 3430 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Cdc40Q9DC48 Aurkaip1-202ENSMUST00000105591 773 ntAPPRIS P1 TSL 3 BASIC12.05□□□□□ -0.48
Cdc40Q9DC48 Arpc3-203ENSMUST00000111713 708 ntTSL 3 BASIC12.05□□□□□ -0.48
Cdc40Q9DC48 Gm12203-201ENSMUST00000118235 598 ntBASIC12.05□□□□□ -0.48
Cdc40Q9DC48 Gm12209-201ENSMUST00000120089 596 ntBASIC12.05□□□□□ -0.48
Cdc40Q9DC48 Pla2g10os-201ENSMUST00000141172 174 ntTSL 5 BASIC12.05□□□□□ -0.48
Cdc40Q9DC48 Gm833-201ENSMUST00000143133 884 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Cdc40Q9DC48 Ssr4-208ENSMUST00000166518 800 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Cdc40Q9DC48 Proscos-202ENSMUST00000178990 666 ntBASIC12.05□□□□□ -0.48
Cdc40Q9DC48 Cox6b2-204ENSMUST00000182173 391 ntTSL 2 BASIC12.05□□□□□ -0.48
Cdc40Q9DC48 Gm29705-201ENSMUST00000212598 474 ntBASIC12.05□□□□□ -0.48
Cdc40Q9DC48 AC159896.2-201ENSMUST00000214753 269 ntBASIC12.05□□□□□ -0.48
Cdc40Q9DC48 AC154319.1-201ENSMUST00000216330 312 ntBASIC12.05□□□□□ -0.48
Cdc40Q9DC48 AL589735.1-201ENSMUST00000224353 270 ntBASIC12.05□□□□□ -0.48
Cdc40Q9DC48 AC155237.1-201ENSMUST00000226196 1279 ntBASIC12.05□□□□□ -0.48
Cdc40Q9DC48 Alkbh3-201ENSMUST00000040005 1228 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Cdc40Q9DC48 Dpp6-201ENSMUST00000071500 3826 ntAPPRIS P3 TSL 1 (best) BASIC12.05□□□□□ -0.48
Cdc40Q9DC48 A530072M11Rik-201ENSMUST00000151122 1852 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Cdc40Q9DC48 Dag1-204ENSMUST00000191899 5662 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Cdc40Q9DC48 Ptp4a1-201ENSMUST00000027232 4145 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Cdc40Q9DC48 Rnf185-201ENSMUST00000064364 2906 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Cdc40Q9DC48 Gm15477-201ENSMUST00000140578 2130 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Cdc40Q9DC48 N6amt1-203ENSMUST00000118310 1700 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Cdc40Q9DC48 Prss8-202ENSMUST00000206124 1709 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Cdc40Q9DC48 Mrm3-201ENSMUST00000040577 1510 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Cdc40Q9DC48 Mamdc4-202ENSMUST00000114223 3998 ntAPPRIS ALT2 TSL 5 BASIC12.05□□□□□ -0.48
Cdc40Q9DC48 Urgcp-203ENSMUST00000118076 4208 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Cdc40Q9DC48 Wwtr1-201ENSMUST00000029380 4697 ntAPPRIS P3 TSL 1 (best) BASIC12.05□□□□□ -0.48
Cdc40Q9DC48 Cyth2-208ENSMUST00000211783 1983 ntTSL 5 BASIC12.05□□□□□ -0.48
Cdc40Q9DC48 Sox17-206ENSMUST00000192650 3242 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Cdc40Q9DC48 Arhgef2-219ENSMUST00000176500 4492 ntAPPRIS ALT2 TSL 5 BASIC12.05□□□□□ -0.48
Cdc40Q9DC48 Arnt-201ENSMUST00000015666 2603 ntTSL 5 BASIC12.05□□□□□ -0.48
Cdc40Q9DC48 Gm12846-201ENSMUST00000120431 1373 ntBASIC12.05□□□□□ -0.48
Cdc40Q9DC48 Muc1-201ENSMUST00000041142 2242 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Cdc40Q9DC48 Ankrd13c-201ENSMUST00000040787 3903 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
Cdc40Q9DC48 Ntm-203ENSMUST00000115237 2039 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Cdc40Q9DC48 Rpe-201ENSMUST00000027157 2692 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Cdc40Q9DC48 Tex13c2-201ENSMUST00000197237 1834 ntAPPRIS P1 BASIC12.04□□□□□ -0.48
Cdc40Q9DC48 AC096628.2-201ENSMUST00000225443 1413 ntBASIC12.04□□□□□ -0.48
Cdc40Q9DC48 Tnfrsf21-201ENSMUST00000024708 3626 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Cdc40Q9DC48 Spib-201ENSMUST00000035323 2788 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Cdc40Q9DC48 Zhx2-201ENSMUST00000096430 4376 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Cdc40Q9DC48 Agrn-201ENSMUST00000071248 4831 ntTSL 5 BASIC12.04□□□□□ -0.48
Cdc40Q9DC48 Rgs7bp-201ENSMUST00000063551 7077 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Cdc40Q9DC48 Fbxw9-201ENSMUST00000095220 1907 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Cdc40Q9DC48 Commd1-201ENSMUST00000057843 1459 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Cdc40Q9DC48 Uggt2-212ENSMUST00000156203 6456 ntAPPRIS P1 TSL 5 BASIC12.04□□□□□ -0.48
Cdc40Q9DC48 Gm29724-201ENSMUST00000214688 3062 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Cdc40Q9DC48 Acsf3-203ENSMUST00000212790 2171 ntAPPRIS P2 TSL 5 BASIC12.04□□□□□ -0.48
Cdc40Q9DC48 Alox12e-201ENSMUST00000019051 2422 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Cdc40Q9DC48 Snhg20-201ENSMUST00000145438 459 ntTSL 3 BASIC12.04□□□□□ -0.48
Cdc40Q9DC48 Gm27331-201ENSMUST00000183705 60 ntBASIC12.04□□□□□ -0.48
Cdc40Q9DC48 Gm4610-201ENSMUST00000198222 905 ntTSL 5 BASIC12.04□□□□□ -0.48
Cdc40Q9DC48 Chfr-212ENSMUST00000200038 606 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Cdc40Q9DC48 Nme2-201ENSMUST00000021217 1012 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Cdc40Q9DC48 Gm36634-201ENSMUST00000218356 1259 ntTSL 3 BASIC12.04□□□□□ -0.48
Cdc40Q9DC48 Cox7a2-201ENSMUST00000034881 659 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Cdc40Q9DC48 Bhmt2-201ENSMUST00000015941 2467 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Cdc40Q9DC48 Tppp-201ENSMUST00000022057 5090 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Cdc40Q9DC48 Arhgap27os3-201ENSMUST00000124462 2729 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Cdc40Q9DC48 Hadhb-203ENSMUST00000114786 2048 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Cdc40Q9DC48 Creb3l3-201ENSMUST00000117422 2294 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Cdc40Q9DC48 Arl4a-205ENSMUST00000146905 3710 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Cdc40Q9DC48 Gzf1-201ENSMUST00000028928 4232 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Cdc40Q9DC48 S1pr3-201ENSMUST00000087978 4463 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Cdc40Q9DC48 Ifnar2-201ENSMUST00000023693 3047 ntAPPRIS P3 TSL 1 (best) BASIC12.04□□□□□ -0.48
Cdc40Q9DC48 Nol10-201ENSMUST00000046011 3021 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Cdc40Q9DC48 Celrr-202ENSMUST00000181433 1561 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Cdc40Q9DC48 Uspl1-205ENSMUST00000121416 3792 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Cdc40Q9DC48 Btrc-202ENSMUST00000111936 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Cdc40Q9DC48 Espn-213ENSMUST00000105659 3595 ntAPPRIS ALT2 TSL 5 BASIC12.04□□□□□ -0.48
Cdc40Q9DC48 Cdyl-202ENSMUST00000163595 3575 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Cdc40Q9DC48 Adam19-201ENSMUST00000011400 6383 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Cdc40Q9DC48 Rnase10-201ENSMUST00000022424 1629 ntAPPRIS P3 TSL 1 (best) BASIC12.04□□□□□ -0.48
Cdc40Q9DC48 AC238940.1-201ENSMUST00000225106 1858 ntBASIC12.04□□□□□ -0.48
Cdc40Q9DC48 Mpzl2-201ENSMUST00000034600 3107 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Cdc40Q9DC48 Efhc1-201ENSMUST00000038447 2146 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Cdc40Q9DC48 Ppp6r1-201ENSMUST00000064099 3862 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Cdc40Q9DC48 Flnc-202ENSMUST00000101617 8939 ntAPPRIS ALT1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Cdc40Q9DC48 0610009O20Rik-201ENSMUST00000025314 2404 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Cdc40Q9DC48 Gtf2i-201ENSMUST00000059042 4455 ntAPPRIS P4 TSL 1 (best) BASIC12.03□□□□□ -0.48
Cdc40Q9DC48 D630023F18Rik-201ENSMUST00000050047 2180 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
Cdc40Q9DC48 1300002E11Rik-202ENSMUST00000181780 1650 ntTSL 2 BASIC12.03□□□□□ -0.48
Cdc40Q9DC48 H2-T22-202ENSMUST00000077960 1694 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
Cdc40Q9DC48 Jade2-203ENSMUST00000109091 6099 ntAPPRIS P2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Cdc40Q9DC48 Vsir-203ENSMUST00000105460 4843 ntAPPRIS ALT1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Cdc40Q9DC48 Vsir-201ENSMUST00000020301 4846 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
Cdc40Q9DC48 Txlng-203ENSMUST00000112315 2525 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Cdc40Q9DC48 Lrrc8e-201ENSMUST00000053035 3878 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Retrieved 100 of 76,532 protein–RNA pairs in 48.4 ms