Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Rhbdd2-201ENSMUST00000043707 4207 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Msh4Q99MT2 Gpd1l-202ENSMUST00000129305 2543 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Msh4Q99MT2 Ccdc162-203ENSMUST00000099932 2742 ntTSL 5 BASIC12.63□□□□□ -0.39
Msh4Q99MT2 Zyg11a-203ENSMUST00000223127 2283 ntAPPRIS ALT2 TSL 5 BASIC12.63□□□□□ -0.39
Msh4Q99MT2 Nup88-203ENSMUST00000108531 2453 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Msh4Q99MT2 Elf1-201ENSMUST00000040131 4235 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Msh4Q99MT2 Dbn1-201ENSMUST00000021950 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Msh4Q99MT2 Nub1-201ENSMUST00000068825 3269 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
Msh4Q99MT2 AC114008.2-201ENSMUST00000227699 1347 ntBASIC12.62□□□□□ -0.39
Msh4Q99MT2 Vill-203ENSMUST00000126251 1411 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Msh4Q99MT2 Opn1sw-203ENSMUST00000147483 1426 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Msh4Q99MT2 Hsd3b4-202ENSMUST00000196861 1610 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Msh4Q99MT2 Gm10681-201ENSMUST00000058728 1610 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Msh4Q99MT2 Muc6-202ENSMUST00000189314 5087 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Msh4Q99MT2 Prss8-202ENSMUST00000206124 1709 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Msh4Q99MT2 Gm45332-201ENSMUST00000210508 1949 ntTSL 5 BASIC12.62□□□□□ -0.39
Msh4Q99MT2 Hspa8-202ENSMUST00000117557 2019 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Msh4Q99MT2 Otx2-201ENSMUST00000118578 2144 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Msh4Q99MT2 Fbxo48-201ENSMUST00000061327 2117 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Msh4Q99MT2 Golga4-201ENSMUST00000084820 7583 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Msh4Q99MT2 Nars-201ENSMUST00000025483 2632 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Msh4Q99MT2 Sh2b1-206ENSMUST00000205889 3011 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Msh4Q99MT2 Prpf38b-201ENSMUST00000029480 3026 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Msh4Q99MT2 Map6-201ENSMUST00000068973 3430 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
Msh4Q99MT2 2310035C23Rik-201ENSMUST00000039173 4328 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
Msh4Q99MT2 Slc16a2-201ENSMUST00000042664 4152 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Msh4Q99MT2 Ubqln1-202ENSMUST00000076454 3561 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
Msh4Q99MT2 Tmem39a-201ENSMUST00000002924 2871 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Msh4Q99MT2 Zfp618-202ENSMUST00000064814 2868 ntAPPRIS P2 TSL 5 BASIC12.62□□□□□ -0.39
Msh4Q99MT2 Hdac11-201ENSMUST00000041736 2653 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Msh4Q99MT2 Acad12-202ENSMUST00000111776 2269 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Msh4Q99MT2 Kif1a-210ENSMUST00000190723 6141 ntTSL 5 BASIC12.62□□□□□ -0.39
Msh4Q99MT2 Ifi47-204ENSMUST00000213728 1678 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
Msh4Q99MT2 Gm10040-201ENSMUST00000080726 1662 ntBASIC12.62□□□□□ -0.39
Msh4Q99MT2 Arvcf-201ENSMUST00000090103 4620 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
Msh4Q99MT2 Cant1-203ENSMUST00000106287 1476 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Msh4Q99MT2 Lsm11-202ENSMUST00000129820 6453 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Msh4Q99MT2 Nxf1-202ENSMUST00000010248 748 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Msh4Q99MT2 Car15-201ENSMUST00000118960 1283 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Msh4Q99MT2 Gm16046-203ENSMUST00000150889 1001 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Msh4Q99MT2 Mb-202ENSMUST00000166179 1056 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Msh4Q99MT2 Mb-203ENSMUST00000169226 1106 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Msh4Q99MT2 Gm24196-201ENSMUST00000179161 110 ntBASIC12.62□□□□□ -0.39
Msh4Q99MT2 Gm27847-201ENSMUST00000183711 107 ntBASIC12.62□□□□□ -0.39
Msh4Q99MT2 Gm27375-201ENSMUST00000183799 107 ntBASIC12.62□□□□□ -0.39
Msh4Q99MT2 Gm9124-201ENSMUST00000191789 1092 ntBASIC12.62□□□□□ -0.39
Msh4Q99MT2 Gm9113-201ENSMUST00000192510 1018 ntBASIC12.62□□□□□ -0.39
Msh4Q99MT2 Gm9131-201ENSMUST00000193557 1089 ntBASIC12.62□□□□□ -0.39
Msh4Q99MT2 Gm9121-201ENSMUST00000193749 1071 ntBASIC12.62□□□□□ -0.39
Msh4Q99MT2 Gm20219-201ENSMUST00000209718 1269 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
Msh4Q99MT2 Gm7561-201ENSMUST00000211203 886 ntBASIC12.62□□□□□ -0.39
Msh4Q99MT2 S100a8-201ENSMUST00000069927 486 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Msh4Q99MT2 Gm10012-201ENSMUST00000078252 192 ntBASIC12.62□□□□□ -0.39
Msh4Q99MT2 Dnmt3a-201ENSMUST00000020991 9685 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Msh4Q99MT2 Aqr-201ENSMUST00000043160 4888 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
Msh4Q99MT2 Dhx37-201ENSMUST00000169485 4760 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Msh4Q99MT2 Ska1-202ENSMUST00000177604 2605 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Msh4Q99MT2 Cep89-201ENSMUST00000079414 2610 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Msh4Q99MT2 Arhgef40-202ENSMUST00000100639 4843 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Msh4Q99MT2 Eif4e2-206ENSMUST00000113233 1807 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Msh4Q99MT2 Gm16090-201ENSMUST00000130296 1704 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Msh4Q99MT2 Rpn1-201ENSMUST00000032143 3633 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Msh4Q99MT2 Hmbs-202ENSMUST00000097558 1534 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Msh4Q99MT2 Enpp5-203ENSMUST00000154166 2490 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Msh4Q99MT2 Wnt9a-202ENSMUST00000108783 3318 ntAPPRIS P2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Msh4Q99MT2 Gm36356-201ENSMUST00000209224 2277 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Msh4Q99MT2 Runx1-201ENSMUST00000023673 5861 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Msh4Q99MT2 Gm13050-201ENSMUST00000122149 1345 ntBASIC12.62□□□□□ -0.39
Msh4Q99MT2 Gm26577-201ENSMUST00000180680 2184 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Msh4Q99MT2 Tor1aip2-207ENSMUST00000128941 2925 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Msh4Q99MT2 Lgals8-203ENSMUST00000124888 2843 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Msh4Q99MT2 Srd5a1-202ENSMUST00000091514 2644 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Msh4Q99MT2 Gtf2i-201ENSMUST00000059042 4455 ntAPPRIS P4 TSL 1 (best) BASIC12.61□□□□□ -0.39
Msh4Q99MT2 Clcn3-201ENSMUST00000004430 4175 ntAPPRIS ALT1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Msh4Q99MT2 Celrr-202ENSMUST00000181433 1561 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Msh4Q99MT2 Pqlc2-202ENSMUST00000105801 2756 ntAPPRIS ALT2 TSL 2 BASIC12.61□□□□□ -0.39
Msh4Q99MT2 Urgcp-203ENSMUST00000118076 4208 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Msh4Q99MT2 Acap1-201ENSMUST00000001631 2482 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Msh4Q99MT2 Psmb9-204ENSMUST00000174576 1351 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Msh4Q99MT2 Mlx-202ENSMUST00000107302 1826 ntAPPRIS ALT1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Msh4Q99MT2 Glipr2-202ENSMUST00000107855 1816 ntTSL 2 BASIC12.61□□□□□ -0.39
Msh4Q99MT2 Set-202ENSMUST00000102866 2824 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
Msh4Q99MT2 Mir874-201ENSMUST00000104769 76 ntBASIC12.61□□□□□ -0.39
Msh4Q99MT2 Ice2-203ENSMUST00000117610 800 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Msh4Q99MT2 Gm11803-201ENSMUST00000119966 444 ntBASIC12.61□□□□□ -0.39
Msh4Q99MT2 Prss41-202ENSMUST00000122936 1088 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Msh4Q99MT2 Gm16229-201ENSMUST00000133270 1232 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Msh4Q99MT2 Gm15851-201ENSMUST00000160564 662 ntTSL 3 BASIC12.61□□□□□ -0.39
Msh4Q99MT2 Syce3-202ENSMUST00000167959 480 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Msh4Q99MT2 Cryaa-201ENSMUST00000019192 1176 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Msh4Q99MT2 Trmt112-ps1-201ENSMUST00000202320 375 ntBASIC12.61□□□□□ -0.39
Msh4Q99MT2 Gm18062-201ENSMUST00000208020 547 ntBASIC12.61□□□□□ -0.39
Msh4Q99MT2 Gm18055-201ENSMUST00000208254 547 ntBASIC12.61□□□□□ -0.39
Msh4Q99MT2 Jakmip1-215ENSMUST00000212047 1191 ntTSL 5 BASIC12.61□□□□□ -0.39
Msh4Q99MT2 AC165254.1-201ENSMUST00000220736 599 ntTSL 5 BASIC12.61□□□□□ -0.39
Msh4Q99MT2 Crybb2-201ENSMUST00000031295 724 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Msh4Q99MT2 Trappc4-201ENSMUST00000034623 1220 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Msh4Q99MT2 Mrps22-201ENSMUST00000035034 1197 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Msh4Q99MT2 Gm6091-201ENSMUST00000098307 165 ntBASIC12.61□□□□□ -0.39
Msh4Q99MT2 Ccdc162-208ENSMUST00000179614 2739 ntTSL 5 BASIC12.61□□□□□ -0.39
Retrieved 100 of 76,532 protein–RNA pairs in 62.7 ms