Protein–RNA interactions for Protein: Q6PFF0

Scaf4, SR-related CTD-associated factor 4, mousemouse

Known RBP Predictions only

Length 1,209 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scaf4Q6PFF0 H2-K1-202ENSMUST00000087189 579 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Scaf4Q6PFF0 Sidt1-201ENSMUST00000047446 4279 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Scaf4Q6PFF0 Uhrf1bp1-201ENSMUST00000114849 8584 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Scaf4Q6PFF0 Pabpc2-201ENSMUST00000063219 2586 ntAPPRIS P1 BASIC12.78□□□□□ -0.36
Scaf4Q6PFF0 Tada3-202ENSMUST00000043333 1708 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Scaf4Q6PFF0 Plch2-206ENSMUST00000135665 4349 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
Scaf4Q6PFF0 Kif28-202ENSMUST00000211943 2643 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
Scaf4Q6PFF0 Osbp2-203ENSMUST00000102950 3077 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Scaf4Q6PFF0 Itfg2-203ENSMUST00000142615 3191 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Scaf4Q6PFF0 Apaf1-207ENSMUST00000161987 2710 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Scaf4Q6PFF0 Csnk1e-202ENSMUST00000120859 1391 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Scaf4Q6PFF0 Chst3-201ENSMUST00000068690 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Scaf4Q6PFF0 St6galnac4-204ENSMUST00000179989 2826 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Scaf4Q6PFF0 Polrmt-201ENSMUST00000020580 3755 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Scaf4Q6PFF0 AI661453-202ENSMUST00000150819 4866 ntAPPRIS P2 TSL 5 BASIC12.78□□□□□ -0.36
Scaf4Q6PFF0 Gm16853-201ENSMUST00000181812 1986 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Scaf4Q6PFF0 Atp6v1b1-201ENSMUST00000006431 1999 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Scaf4Q6PFF0 Rbak-202ENSMUST00000165318 3480 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Scaf4Q6PFF0 Rpl22-208ENSMUST00000188151 2048 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Scaf4Q6PFF0 Spert-202ENSMUST00000164082 1560 ntAPPRIS ALT2 TSL 2 BASIC12.77□□□□□ -0.36
Scaf4Q6PFF0 Ldha-202ENSMUST00000048209 1588 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Scaf4Q6PFF0 Tmem115-201ENSMUST00000010189 2194 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Scaf4Q6PFF0 Nfasc-207ENSMUST00000187861 4927 ntTSL 5 BASIC12.77□□□□□ -0.36
Scaf4Q6PFF0 Ccdc88c-201ENSMUST00000068411 7542 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.36
Scaf4Q6PFF0 Tmem230-203ENSMUST00000110164 2957 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.36
Scaf4Q6PFF0 Stx11-201ENSMUST00000042861 4173 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Scaf4Q6PFF0 Ralgps2-207ENSMUST00000188656 2481 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Scaf4Q6PFF0 Gm7104-201ENSMUST00000179741 2532 ntBASIC12.77□□□□□ -0.37
Scaf4Q6PFF0 Alpk3-201ENSMUST00000107348 6369 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Scaf4Q6PFF0 Gdap1l1-203ENSMUST00000109421 1206 ntAPPRIS ALT1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Scaf4Q6PFF0 Tspan5-203ENSMUST00000121826 1114 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Scaf4Q6PFF0 Gm11978-201ENSMUST00000122315 466 ntBASIC12.77□□□□□ -0.37
Scaf4Q6PFF0 Gm13850-201ENSMUST00000140465 623 ntTSL 3 BASIC12.77□□□□□ -0.37
Scaf4Q6PFF0 Mettl26-204ENSMUST00000169085 324 ntTSL 5 BASIC12.77□□□□□ -0.37
Scaf4Q6PFF0 Dpf3-205ENSMUST00000177801 1092 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Scaf4Q6PFF0 Fcrl1-204ENSMUST00000191666 925 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Scaf4Q6PFF0 Gm42550-201ENSMUST00000201553 960 ntBASIC12.77□□□□□ -0.37
Scaf4Q6PFF0 Lce3b-201ENSMUST00000046234 562 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Scaf4Q6PFF0 Lcn10-201ENSMUST00000058912 1106 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Scaf4Q6PFF0 Mrps21-202ENSMUST00000072587 405 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Scaf4Q6PFF0 Wnt16-202ENSMUST00000128245 3285 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Scaf4Q6PFF0 A530016L24Rik-201ENSMUST00000057465 2636 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Scaf4Q6PFF0 Pcnx2-201ENSMUST00000047239 7236 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
Scaf4Q6PFF0 Gtf2ird1-202ENSMUST00000074114 3330 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Scaf4Q6PFF0 Eif3j1-201ENSMUST00000028668 5413 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Scaf4Q6PFF0 Vax2os-203ENSMUST00000155159 4063 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Scaf4Q6PFF0 2610507I01Rik-201ENSMUST00000154354 1360 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Scaf4Q6PFF0 Bicd1-202ENSMUST00000086829 9667 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Scaf4Q6PFF0 Kif2c-201ENSMUST00000065896 2842 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.37
Scaf4Q6PFF0 Sema4a-202ENSMUST00000107531 2897 ntTSL 5 BASIC12.77□□□□□ -0.37
Scaf4Q6PFF0 Gm28043-201ENSMUST00000130871 6521 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.37
Scaf4Q6PFF0 Lat2-205ENSMUST00000200998 1481 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Scaf4Q6PFF0 Sgce-207ENSMUST00000126151 1522 ntTSL 5 BASIC12.77□□□□□ -0.37
Scaf4Q6PFF0 Pigh-201ENSMUST00000072154 2339 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Scaf4Q6PFF0 E230020A03Rik-201ENSMUST00000194646 2386 ntBASIC12.77□□□□□ -0.37
Scaf4Q6PFF0 Ggnbp1-203ENSMUST00000133257 5012 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.37
Scaf4Q6PFF0 Rnf220-202ENSMUST00000094853 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Scaf4Q6PFF0 Psmd9-201ENSMUST00000100729 2597 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Scaf4Q6PFF0 Zfp961-202ENSMUST00000131237 2689 ntAPPRIS ALT2 TSL 3 BASIC12.76□□□□□ -0.37
Scaf4Q6PFF0 Ptdss2-201ENSMUST00000026568 3624 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Scaf4Q6PFF0 Brf2-201ENSMUST00000033877 1899 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Scaf4Q6PFF0 Tmem237-202ENSMUST00000094917 1869 ntAPPRIS P4 TSL 1 (best) BASIC12.76□□□□□ -0.37
Scaf4Q6PFF0 Cdc25c-201ENSMUST00000060710 1941 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Scaf4Q6PFF0 Pik3r1-201ENSMUST00000035532 2923 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Scaf4Q6PFF0 Shank2-203ENSMUST00000105902 8988 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
Scaf4Q6PFF0 Plcb1-202ENSMUST00000110116 7003 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Scaf4Q6PFF0 Rgs20-202ENSMUST00000118000 2125 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
Scaf4Q6PFF0 Mrpl50-201ENSMUST00000057829 2114 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Scaf4Q6PFF0 Tnrc6c-201ENSMUST00000026658 8724 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
Scaf4Q6PFF0 Grsf1-202ENSMUST00000113234 2286 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Scaf4Q6PFF0 Plekha2-204ENSMUST00000128715 3463 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Scaf4Q6PFF0 Trpv6-203ENSMUST00000201471 2304 ntAPPRIS P2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Scaf4Q6PFF0 Gck-203ENSMUST00000109823 2361 ntTSL 5 BASIC12.76□□□□□ -0.37
Scaf4Q6PFF0 Bbs4-201ENSMUST00000026265 2518 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Scaf4Q6PFF0 1700001C02Rik-203ENSMUST00000127815 660 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Scaf4Q6PFF0 Rims3-204ENSMUST00000171363 977 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Scaf4Q6PFF0 Gm26935-201ENSMUST00000182686 519 ntTSL 5 BASIC12.76□□□□□ -0.37
Scaf4Q6PFF0 2310040G24Rik-202ENSMUST00000189386 775 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Scaf4Q6PFF0 Gm20753-201ENSMUST00000190105 545 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Scaf4Q6PFF0 Gm43714-201ENSMUST00000198351 1204 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Scaf4Q6PFF0 Gm8239-201ENSMUST00000204094 444 ntTSL 2 BASIC12.76□□□□□ -0.37
Scaf4Q6PFF0 Nsmce1-201ENSMUST00000033006 1120 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Scaf4Q6PFF0 Orc6-201ENSMUST00000034132 1287 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Scaf4Q6PFF0 Hp-201ENSMUST00000074898 1345 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Scaf4Q6PFF0 Fgfr3-211ENSMUST00000171509 4020 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
Scaf4Q6PFF0 Fam71f1-204ENSMUST00000166462 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Scaf4Q6PFF0 Lrrfip1-202ENSMUST00000068167 2849 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
Scaf4Q6PFF0 Vwa8-201ENSMUST00000040990 7054 ntAPPRIS P2 TSL 5 BASIC12.76□□□□□ -0.37
Scaf4Q6PFF0 Chmp5-201ENSMUST00000030128 1519 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Scaf4Q6PFF0 Ociad1-201ENSMUST00000031038 1523 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Scaf4Q6PFF0 Gm45684-201ENSMUST00000210244 1571 ntBASIC12.76□□□□□ -0.37
Scaf4Q6PFF0 Ahdc1-203ENSMUST00000105915 6341 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Scaf4Q6PFF0 Corin-201ENSMUST00000005352 4862 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
Scaf4Q6PFF0 Arhgap11a-201ENSMUST00000102545 4958 ntAPPRIS P2 TSL 5 BASIC12.76□□□□□ -0.37
Scaf4Q6PFF0 Top2b-201ENSMUST00000017629 10335 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Scaf4Q6PFF0 Aqp6-201ENSMUST00000023754 2060 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Scaf4Q6PFF0 Wdcp-205ENSMUST00000220215 2202 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Scaf4Q6PFF0 Rbpj-207ENSMUST00000201883 4961 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Scaf4Q6PFF0 BC030867-201ENSMUST00000100392 2547 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Scaf4Q6PFF0 Sqle-202ENSMUST00000100640 2636 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 40.3 ms