Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Sypl2-201ENSMUST00000141387 4090 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.71
Sdc1P18828 Mirt1-202ENSMUST00000180667 1633 ntTSL 5 BASIC10.58□□□□□ -0.72
Sdc1P18828 Rit2-203ENSMUST00000153060 1806 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
Sdc1P18828 Pltp-201ENSMUST00000059954 1809 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
Sdc1P18828 Gm26770-201ENSMUST00000180586 2237 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
Sdc1P18828 Zic4-204ENSMUST00000172646 2535 ntAPPRIS P1 TSL 5 BASIC10.58□□□□□ -0.72
Sdc1P18828 BC024139-201ENSMUST00000054022 2623 ntAPPRIS P2 TSL 1 (best) BASIC10.58□□□□□ -0.72
Sdc1P18828 Med1-202ENSMUST00000092735 2627 ntAPPRIS ALT2 TSL 1 (best) BASIC10.58□□□□□ -0.72
Sdc1P18828 Olfr658-202ENSMUST00000210641 2915 ntAPPRIS ALT1 TSL 1 (best) BASIC10.58□□□□□ -0.72
Sdc1P18828 Rbm12b1-201ENSMUST00000050069 2949 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
Sdc1P18828 Olfr658-201ENSMUST00000089296 2912 ntAPPRIS P2 TSL 1 (best) BASIC10.58□□□□□ -0.72
Sdc1P18828 Setdb1-202ENSMUST00000107170 4622 ntAPPRIS P3 TSL 1 (best) BASIC10.58□□□□□ -0.72
Sdc1P18828 Arvcf-204ENSMUST00000115613 4800 ntAPPRIS P3 TSL 5 BASIC10.58□□□□□ -0.72
Sdc1P18828 Galntl6-208ENSMUST00000204128 5680 ntAPPRIS P1 TSL 5 BASIC10.58□□□□□ -0.72
Sdc1P18828 Gm2238-201ENSMUST00000192074 3669 ntBASIC10.58□□□□□ -0.72
Sdc1P18828 Vamp1-201ENSMUST00000032487 2772 ntAPPRIS P3 TSL 1 (best) BASIC10.58□□□□□ -0.72
Sdc1P18828 Rufy2-203ENSMUST00000122231 2664 ntTSL 5 BASIC10.58□□□□□ -0.72
Sdc1P18828 Rftn1-202ENSMUST00000113195 2385 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
Sdc1P18828 Fcrls-201ENSMUST00000090986 2273 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
Sdc1P18828 Slc23a4-201ENSMUST00000044387 2175 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
Sdc1P18828 Pdhx-202ENSMUST00000111183 2078 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
Sdc1P18828 Slc30a3-206ENSMUST00000202740 1989 ntTSL 5 BASIC10.58□□□□□ -0.72
Sdc1P18828 4933431E20Rik-201ENSMUST00000131345 5407 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
Sdc1P18828 Cops4-201ENSMUST00000045993 1755 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
Sdc1P18828 Pink1-202ENSMUST00000105816 1465 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
Sdc1P18828 Gm26794-201ENSMUST00000180810 4312 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
Sdc1P18828 Kifap3-201ENSMUST00000027877 3946 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
Sdc1P18828 Dnajc24-201ENSMUST00000102555 1197 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
Sdc1P18828 H2-Q6-201ENSMUST00000113879 981 ntAPPRIS P1 TSL 2 BASIC10.58□□□□□ -0.72
Sdc1P18828 Tmem217-201ENSMUST00000114683 904 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
Sdc1P18828 Gm14617-202ENSMUST00000144208 607 ntTSL 3 BASIC10.58□□□□□ -0.72
Sdc1P18828 Tmem109-207ENSMUST00000147699 1096 ntTSL 2 BASIC10.58□□□□□ -0.72
Sdc1P18828 Tmem217-202ENSMUST00000168339 812 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
Sdc1P18828 Rab10os-206ENSMUST00000179908 746 ntTSL 5 BASIC10.58□□□□□ -0.72
Sdc1P18828 Psmg3-202ENSMUST00000182602 733 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
Sdc1P18828 Gm27631-201ENSMUST00000184163 466 ntBASIC10.58□□□□□ -0.72
Sdc1P18828 Gm27390-201ENSMUST00000184516 176 ntBASIC10.58□□□□□ -0.72
Sdc1P18828 Gm33142-201ENSMUST00000193913 867 ntBASIC10.58□□□□□ -0.72
Sdc1P18828 Gm19184-201ENSMUST00000196798 928 ntBASIC10.58□□□□□ -0.72
Sdc1P18828 Tac4-201ENSMUST00000021242 1251 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
Sdc1P18828 Wdyhv1-204ENSMUST00000226955 1094 ntBASIC10.58□□□□□ -0.72
Sdc1P18828 Rgp1-201ENSMUST00000030190 1292 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
Sdc1P18828 Tst-201ENSMUST00000058659 1096 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
Sdc1P18828 Ndufv3-202ENSMUST00000064798 485 ntAPPRIS ALT2 TSL 1 (best) BASIC10.58□□□□□ -0.72
Sdc1P18828 Gm5129-201ENSMUST00000065372 300 ntAPPRIS P1 BASIC10.58□□□□□ -0.72
Sdc1P18828 Psma5-201ENSMUST00000090569 1239 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
Sdc1P18828 1700086L19Rik-201ENSMUST00000095617 706 ntBASIC10.58□□□□□ -0.72
Sdc1P18828 Olfr142-201ENSMUST00000099752 918 ntAPPRIS P1 BASIC10.58□□□□□ -0.72
Sdc1P18828 Mthfd1l-201ENSMUST00000043735 3535 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
Sdc1P18828 Tmeff2-202ENSMUST00000114565 2718 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
Sdc1P18828 Wdr33-201ENSMUST00000025264 6206 ntAPPRIS P1 TSL 5 BASIC10.58□□□□□ -0.72
Sdc1P18828 Pdcd4-202ENSMUST00000074371 2418 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
Sdc1P18828 Sema3f-201ENSMUST00000080560 3395 ntAPPRIS P3 TSL 1 (best) BASIC10.58□□□□□ -0.72
Sdc1P18828 Zfp423-201ENSMUST00000052250 4510 ntAPPRIS ALT2 TSL 1 (best) BASIC10.58□□□□□ -0.72
Sdc1P18828 Arhgef2-206ENSMUST00000175779 3065 ntAPPRIS ALT2 TSL 5 BASIC10.58□□□□□ -0.72
Sdc1P18828 Cysltr2-202ENSMUST00000169168 1744 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
Sdc1P18828 Slurp1-202ENSMUST00000190433 2859 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
Sdc1P18828 Dlk2-201ENSMUST00000061722 1532 ntTSL 5 BASIC10.58□□□□□ -0.72
Sdc1P18828 Bcl7b-203ENSMUST00000111188 1434 ntAPPRIS ALT1 TSL 5 BASIC10.58□□□□□ -0.72
Sdc1P18828 Akt2-201ENSMUST00000051356 2923 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Sdc1P18828 Zfp429-201ENSMUST00000109732 2056 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Sdc1P18828 Ric3-201ENSMUST00000055993 5281 ntAPPRIS P3 TSL 1 (best) BASIC10.57□□□□□ -0.72
Sdc1P18828 Gm4316-201ENSMUST00000212411 2617 ntTSL 5 BASIC10.57□□□□□ -0.72
Sdc1P18828 Alg12-201ENSMUST00000043087 1793 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
Sdc1P18828 Cpn2-201ENSMUST00000064856 4583 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Sdc1P18828 Olfr160-203ENSMUST00000215727 1667 ntAPPRIS P1 TSL 5 BASIC10.57□□□□□ -0.72
Sdc1P18828 Cttnbp2nl-201ENSMUST00000077548 4946 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Sdc1P18828 Gm9946-202ENSMUST00000162741 1580 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
Sdc1P18828 Neu4-201ENSMUST00000050890 4511 ntAPPRIS P3 TSL 1 (best) BASIC10.57□□□□□ -0.72
Sdc1P18828 Rai1-203ENSMUST00000102688 6921 ntAPPRIS P1 TSL 5 BASIC10.57□□□□□ -0.72
Sdc1P18828 Zbtb6-202ENSMUST00000112932 5077 ntAPPRIS P1 TSL 2 BASIC10.57□□□□□ -0.72
Sdc1P18828 2310035C23Rik-210ENSMUST00000190501 3852 ntAPPRIS ALT2 TSL 1 (best) BASIC10.57□□□□□ -0.72
Sdc1P18828 Syce1-201ENSMUST00000026553 1460 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Sdc1P18828 Plce1-204ENSMUST00000182481 8357 ntAPPRIS P2 TSL 5 BASIC10.57□□□□□ -0.72
Sdc1P18828 Pars2-202ENSMUST00000106781 3046 ntAPPRIS ALT2 TSL 1 (best) BASIC10.57□□□□□ -0.72
Sdc1P18828 Rpl36-ps8-201ENSMUST00000121187 315 ntBASIC10.57□□□□□ -0.72
Sdc1P18828 Gm7862-201ENSMUST00000121461 292 ntBASIC10.57□□□□□ -0.72
Sdc1P18828 Gm6161-201ENSMUST00000121942 1102 ntBASIC10.57□□□□□ -0.72
Sdc1P18828 Gssos2-201ENSMUST00000130859 727 ntTSL 3 BASIC10.57□□□□□ -0.72
Sdc1P18828 Mpv17l-205ENSMUST00000143697 580 ntTSL 2 BASIC10.57□□□□□ -0.72
Sdc1P18828 Gm13066-201ENSMUST00000145263 884 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
Sdc1P18828 Ube4bos1-202ENSMUST00000151896 1286 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
Sdc1P18828 Hnrnpa3-207ENSMUST00000164947 1074 ntAPPRIS ALT2 TSL 5 BASIC10.57□□□□□ -0.72
Sdc1P18828 Gm6254-201ENSMUST00000168178 1072 ntBASIC10.57□□□□□ -0.72
Sdc1P18828 Gm6153-201ENSMUST00000172004 1058 ntBASIC10.57□□□□□ -0.72
Sdc1P18828 Gm20444-201ENSMUST00000174014 648 ntTSL 3 BASIC10.57□□□□□ -0.72
Sdc1P18828 Vhl-ps1-201ENSMUST00000174813 597 ntBASIC10.57□□□□□ -0.72
Sdc1P18828 Gm9242-201ENSMUST00000177820 1074 ntAPPRIS P1 BASIC10.57□□□□□ -0.72
Sdc1P18828 Gm26620-201ENSMUST00000180542 817 ntAPPRIS P1 BASIC10.57□□□□□ -0.72
Sdc1P18828 Tmem178b-203ENSMUST00000180886 712 ntTSL 5 BASIC10.57□□□□□ -0.72
Sdc1P18828 Gm5641-202ENSMUST00000198699 1080 ntBASIC10.57□□□□□ -0.72
Sdc1P18828 Gm45144-201ENSMUST00000207473 354 ntTSL 5 BASIC10.57□□□□□ -0.72
Sdc1P18828 Gm18669-201ENSMUST00000216049 778 ntBASIC10.57□□□□□ -0.72
Sdc1P18828 AC154305.4-201ENSMUST00000224520 614 ntBASIC10.57□□□□□ -0.72
Sdc1P18828 CT573086.1-201ENSMUST00000227202 1074 ntBASIC10.57□□□□□ -0.72
Sdc1P18828 Ndufc2-201ENSMUST00000032882 683 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Sdc1P18828 Myl12b-201ENSMUST00000038446 1253 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Sdc1P18828 Atad3aos-201ENSMUST00000067628 971 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
Sdc1P18828 Gapdh-201ENSMUST00000073605 1272 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Sdc1P18828 Hspa2-202ENSMUST00000219555 2526 ntAPPRIS P1 BASIC10.57□□□□□ -0.72
Retrieved 100 of 76,532 protein–RNA pairs in 55.7 ms