Protein–RNA interactions for Protein: O88207

Col5a1, Collagen alpha-1(V) chain, mousemouse

Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col5a1O88207 Rpn2-202ENSMUST00000116380 2756 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Col5a1O88207 Lgals12-202ENSMUST00000099729 2757 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Col5a1O88207 Spock3-201ENSMUST00000093480 3024 ntAPPRIS P3 TSL 5 BASIC11.51□□□□□ -0.57
Col5a1O88207 Limd2-203ENSMUST00000106875 936 ntAPPRIS P1 TSL 3 BASIC11.51□□□□□ -0.57
Col5a1O88207 Gm6963-201ENSMUST00000147879 379 ntBASIC11.51□□□□□ -0.57
Col5a1O88207 Rmrp-201ENSMUST00000157463 271 ntBASIC11.51□□□□□ -0.57
Col5a1O88207 Gm8492-201ENSMUST00000182375 987 ntBASIC11.51□□□□□ -0.57
Col5a1O88207 Gm29707-202ENSMUST00000198744 659 ntTSL 3 BASIC11.51□□□□□ -0.57
Col5a1O88207 AL732506.1-201ENSMUST00000226420 281 ntBASIC11.51□□□□□ -0.57
Col5a1O88207 Pex11b-201ENSMUST00000048766 1122 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Col5a1O88207 Nceh1-202ENSMUST00000091284 830 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Col5a1O88207 Adi1-201ENSMUST00000020957 1652 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Col5a1O88207 Zfp207-206ENSMUST00000165565 2311 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Col5a1O88207 Tssk5-201ENSMUST00000071119 1518 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Col5a1O88207 Lrrc30-201ENSMUST00000097290 1759 ntAPPRIS P1 BASIC11.51□□□□□ -0.57
Col5a1O88207 Gm5580-201ENSMUST00000122096 1362 ntAPPRIS P1 BASIC11.51□□□□□ -0.57
Col5a1O88207 Kcnk13-204ENSMUST00000177549 3075 ntAPPRIS P1 TSL 5 BASIC11.51□□□□□ -0.57
Col5a1O88207 Zfp346-201ENSMUST00000021937 3333 ntAPPRIS P2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Col5a1O88207 Fam83e-201ENSMUST00000129507 2908 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Col5a1O88207 Gapvd1-203ENSMUST00000113099 5758 ntAPPRIS ALT2 TSL 5 BASIC11.51□□□□□ -0.57
Col5a1O88207 B230206H07Rik-202ENSMUST00000134845 3269 ntTSL 5 BASIC11.51□□□□□ -0.57
Col5a1O88207 Grk6-205ENSMUST00000224653 2976 ntBASIC11.51□□□□□ -0.57
Col5a1O88207 Tfe3-206ENSMUST00000115679 3239 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Col5a1O88207 Fam84b-201ENSMUST00000100635 5565 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Col5a1O88207 Cdk19-201ENSMUST00000044672 5807 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Col5a1O88207 Tmem260-209ENSMUST00000226422 6333 ntAPPRIS ALT2 BASIC11.51□□□□□ -0.57
Col5a1O88207 Atat1-212ENSMUST00000141662 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Col5a1O88207 Phf21b-201ENSMUST00000016768 3377 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Col5a1O88207 Cyp4x1-201ENSMUST00000051400 1524 ntAPPRIS P2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Col5a1O88207 Fthl17d-201ENSMUST00000105004 856 ntAPPRIS P1 BASIC11.51□□□□□ -0.57
Col5a1O88207 Pax5-204ENSMUST00000107826 1228 ntTSL 5 BASIC11.51□□□□□ -0.57
Col5a1O88207 Gm12314-201ENSMUST00000118104 538 ntBASIC11.51□□□□□ -0.57
Col5a1O88207 Gm11752-201ENSMUST00000143291 510 ntTSL 2 BASIC11.51□□□□□ -0.57
Col5a1O88207 4930538E20Rik-202ENSMUST00000146717 497 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Col5a1O88207 9030616G12Rik-201ENSMUST00000181142 644 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Col5a1O88207 Gm29187-201ENSMUST00000186681 689 ntTSL 3 BASIC11.51□□□□□ -0.57
Col5a1O88207 9230114K14Rik-203ENSMUST00000199547 437 ntTSL 3 BASIC11.51□□□□□ -0.57
Col5a1O88207 Brsk1-205ENSMUST00000206024 1216 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Col5a1O88207 Cct2-206ENSMUST00000219573 637 ntTSL 3 BASIC11.51□□□□□ -0.57
Col5a1O88207 CT009486.1-201ENSMUST00000222047 661 ntTSL 3 BASIC11.51□□□□□ -0.57
Col5a1O88207 AC113031.8-201ENSMUST00000227856 631 ntBASIC11.51□□□□□ -0.57
Col5a1O88207 Igfals-201ENSMUST00000050714 2111 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Col5a1O88207 Gm4950-201ENSMUST00000091905 618 ntAPPRIS P1 BASIC11.51□□□□□ -0.57
Col5a1O88207 Suv39h1-201ENSMUST00000115636 2707 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Col5a1O88207 Dus2-201ENSMUST00000034375 1860 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Col5a1O88207 Sgms1-212ENSMUST00000151289 2488 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Col5a1O88207 Ell2-201ENSMUST00000001583 4382 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Col5a1O88207 Spcs2-201ENSMUST00000036274 2909 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Col5a1O88207 Hnrnpul1-201ENSMUST00000043765 3354 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Col5a1O88207 Ppard-201ENSMUST00000002320 3218 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Col5a1O88207 Fyn-206ENSMUST00000136659 1910 ntTSL 5 BASIC11.5□□□□□ -0.57
Col5a1O88207 Acin1-202ENSMUST00000022794 2365 ntAPPRIS ALT2 TSL 5 BASIC11.5□□□□□ -0.57
Col5a1O88207 Slc6a18-208ENSMUST00000222029 2005 ntAPPRIS P3 TSL 1 (best) BASIC11.5□□□□□ -0.57
Col5a1O88207 Tle1-202ENSMUST00000072695 3644 ntAPPRIS P2 TSL 1 (best) BASIC11.5□□□□□ -0.57
Col5a1O88207 6030442K20Rik-201ENSMUST00000180835 1540 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Col5a1O88207 Pias3-202ENSMUST00000107076 2858 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Col5a1O88207 Slc6a7-201ENSMUST00000025520 3342 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Col5a1O88207 Lmbr1l-202ENSMUST00000109127 2548 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Col5a1O88207 Gorab-201ENSMUST00000045138 2538 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Col5a1O88207 Tmem56-203ENSMUST00000128909 6696 ntAPPRIS P2 TSL 1 (best) BASIC11.5□□□□□ -0.57
Col5a1O88207 Adtrp-202ENSMUST00000121404 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC11.5□□□□□ -0.57
Col5a1O88207 Prrxl1-201ENSMUST00000068938 1610 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Col5a1O88207 Smpd4-206ENSMUST00000163997 1722 ntTSL 5 BASIC11.5□□□□□ -0.57
Col5a1O88207 Msrb3-202ENSMUST00000130950 561 ntTSL 3 BASIC11.5□□□□□ -0.57
Col5a1O88207 Tbc1d22bos-201ENSMUST00000159875 826 ntTSL 3 BASIC11.5□□□□□ -0.57
Col5a1O88207 Omt2a-203ENSMUST00000166056 1167 ntAPPRIS P4 TSL 1 (best) BASIC11.5□□□□□ -0.57
Col5a1O88207 Gm8494-201ENSMUST00000178171 1233 ntBASIC11.5□□□□□ -0.57
Col5a1O88207 Nipsnap3a-204ENSMUST00000188045 1099 ntAPPRIS P2 TSL 1 (best) BASIC11.5□□□□□ -0.57
Col5a1O88207 Gm33222-201ENSMUST00000193725 654 ntTSL 3 BASIC11.5□□□□□ -0.57
Col5a1O88207 1700039I01Rik-201ENSMUST00000194370 479 ntBASIC11.5□□□□□ -0.57
Col5a1O88207 Gm17812-201ENSMUST00000204935 318 ntBASIC11.5□□□□□ -0.57
Col5a1O88207 Aprt-203ENSMUST00000211823 590 ntTSL 3 BASIC11.5□□□□□ -0.57
Col5a1O88207 Syde2-204ENSMUST00000212479 3810 ntAPPRIS ALT2 TSL 5 BASIC11.5□□□□□ -0.57
Col5a1O88207 Olfr56-201ENSMUST00000056759 1925 ntTSL 5 BASIC11.5□□□□□ -0.57
Col5a1O88207 Cux1-212ENSMUST00000176778 5520 ntAPPRIS ALT2 TSL 5 BASIC11.5□□□□□ -0.57
Col5a1O88207 Rnpepl1-201ENSMUST00000027487 3337 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Col5a1O88207 Pfkfb3-204ENSMUST00000114844 2107 ntTSL 5 BASIC11.5□□□□□ -0.57
Col5a1O88207 Ankle2-206ENSMUST00000197188 4077 ntAPPRIS P3 TSL 1 (best) BASIC11.5□□□□□ -0.57
Col5a1O88207 Cdk10-212ENSMUST00000213005 1580 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Col5a1O88207 Dct-201ENSMUST00000022725 2202 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Col5a1O88207 Dnajb5-204ENSMUST00000107973 2300 ntAPPRIS P2 TSL 1 (best) BASIC11.5□□□□□ -0.57
Col5a1O88207 Arhgef40-216ENSMUST00000182760 5130 ntAPPRIS ALT2 TSL 5 BASIC11.5□□□□□ -0.57
Col5a1O88207 Rnf168-203ENSMUST00000171474 4460 ntAPPRIS P2 TSL 1 (best) BASIC11.5□□□□□ -0.57
Col5a1O88207 Tufm-202ENSMUST00000106392 1754 ntTSL 2 BASIC11.5□□□□□ -0.57
Col5a1O88207 Specc1-209ENSMUST00000201671 2523 ntTSL 5 BASIC11.5□□□□□ -0.57
Col5a1O88207 Ripk3-201ENSMUST00000022830 1892 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Col5a1O88207 Gopc-201ENSMUST00000020008 4216 ntAPPRIS P2 TSL 1 (best) BASIC11.5□□□□□ -0.57
Col5a1O88207 Slc6a18-210ENSMUST00000223074 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC11.5□□□□□ -0.57
Col5a1O88207 D630023F18Rik-201ENSMUST00000050047 2180 ntAPPRIS P3 TSL 1 (best) BASIC11.5□□□□□ -0.57
Col5a1O88207 Nphs1os-201ENSMUST00000152625 1339 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Col5a1O88207 Tubb2a-ps2-201ENSMUST00000221547 1339 ntBASIC11.5□□□□□ -0.57
Col5a1O88207 Samd7-201ENSMUST00000108262 3144 ntAPPRIS P1 TSL 5 BASIC11.5□□□□□ -0.57
Col5a1O88207 Mrs2-201ENSMUST00000021772 7035 ntAPPRIS P1 TSL 5 BASIC11.5□□□□□ -0.57
Col5a1O88207 Gda-201ENSMUST00000087600 5428 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Col5a1O88207 Rbfox3-201ENSMUST00000017576 3150 ntAPPRIS P4 TSL 1 (best) BASIC11.49□□□□□ -0.57
Col5a1O88207 Bpi-203ENSMUST00000109500 1911 ntAPPRIS ALT2 TSL 5 BASIC11.49□□□□□ -0.57
Col5a1O88207 Fank1-201ENSMUST00000065359 2004 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Col5a1O88207 Hnrnpul1-205ENSMUST00000206832 3784 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Col5a1O88207 Psmd1-201ENSMUST00000027432 3112 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Col5a1O88207 Opa1-201ENSMUST00000038867 3230 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
Retrieved 100 of 76,532 protein–RNA pairs in 81.1 ms