Protein–RNA interactions for Protein: Q9QXK7

Cpsf3, Cleavage and polyadenylation specificity factor subunit 3, mousemouse

Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf3Q9QXK7 Mdk-203ENSMUST00000090602 714 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
Cpsf3Q9QXK7 Lgals12-202ENSMUST00000099729 2757 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Cpsf3Q9QXK7 Cttnbp2nl-202ENSMUST00000098763 4834 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Cpsf3Q9QXK7 Scarb2-201ENSMUST00000031377 4698 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Cpsf3Q9QXK7 Cadps2-209ENSMUST00000142913 4533 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
Cpsf3Q9QXK7 Gm45638-201ENSMUST00000211507 2878 ntBASIC13.94□□□□□ -0.18
Cpsf3Q9QXK7 Gpc2-205ENSMUST00000161827 2586 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
Cpsf3Q9QXK7 Nmral1-204ENSMUST00000120056 2440 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Cpsf3Q9QXK7 Zfp429-202ENSMUST00000181071 2117 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Cpsf3Q9QXK7 D430019H16Rik-201ENSMUST00000178224 5786 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Cpsf3Q9QXK7 5830462O15Rik-201ENSMUST00000214603 1655 ntBASIC13.94□□□□□ -0.18
Cpsf3Q9QXK7 Exosc2-201ENSMUST00000038474 1686 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Cpsf3Q9QXK7 BC048403-202ENSMUST00000136432 2968 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Cpsf3Q9QXK7 Bdp1-201ENSMUST00000038104 9921 ntAPPRIS P2 TSL 5 BASIC13.94□□□□□ -0.18
Cpsf3Q9QXK7 Olfr649-202ENSMUST00000106859 1382 ntAPPRIS P1 TSL 3 BASIC13.94□□□□□ -0.18
Cpsf3Q9QXK7 Eya1-203ENSMUST00000168081 4366 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Cpsf3Q9QXK7 Slc29a1-203ENSMUST00000097317 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
Cpsf3Q9QXK7 Leng8-203ENSMUST00000121270 3620 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
Cpsf3Q9QXK7 Esr1-204ENSMUST00000105590 6339 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Cpsf3Q9QXK7 Gm15897-201ENSMUST00000117770 1486 ntBASIC13.93□□□□□ -0.18
Cpsf3Q9QXK7 Prdm5-202ENSMUST00000031976 2155 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Cpsf3Q9QXK7 Sbk1-201ENSMUST00000056028 4109 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Cpsf3Q9QXK7 Ap2a1-203ENSMUST00000166972 3449 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Cpsf3Q9QXK7 Gm5106-201ENSMUST00000181058 1334 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Cpsf3Q9QXK7 Tnks1bp1-201ENSMUST00000048400 4799 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Cpsf3Q9QXK7 Nr3c1-203ENSMUST00000115567 6436 ntAPPRIS P2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Cpsf3Q9QXK7 Rabep2-201ENSMUST00000106405 2279 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Cpsf3Q9QXK7 Lingo1-202ENSMUST00000114247 2287 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Cpsf3Q9QXK7 Gm10176-201ENSMUST00000159707 2264 ntBASIC13.93□□□□□ -0.18
Cpsf3Q9QXK7 Lipe-202ENSMUST00000054301 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Cpsf3Q9QXK7 Fbxo44-208ENSMUST00000167160 1572 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
Cpsf3Q9QXK7 Sema3d-201ENSMUST00000030868 6307 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Cpsf3Q9QXK7 Acin1-202ENSMUST00000022794 2365 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
Cpsf3Q9QXK7 Gm10544-201ENSMUST00000180516 2239 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Cpsf3Q9QXK7 Kctd14-205ENSMUST00000206279 2203 ntAPPRIS ALT2 TSL 2 BASIC13.93□□□□□ -0.18
Cpsf3Q9QXK7 Gpat2-201ENSMUST00000062211 2628 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
Cpsf3Q9QXK7 Prpf38b-201ENSMUST00000029480 3026 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Cpsf3Q9QXK7 Qdpr-203ENSMUST00000118097 1232 ntTSL 5 BASIC13.93□□□□□ -0.18
Cpsf3Q9QXK7 Rpl19-ps12-201ENSMUST00000121251 591 ntBASIC13.93□□□□□ -0.18
Cpsf3Q9QXK7 Gm20521-201ENSMUST00000134077 1245 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
Cpsf3Q9QXK7 A330102I10Rik-202ENSMUST00000140415 682 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Cpsf3Q9QXK7 Gm16191-202ENSMUST00000148464 484 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Cpsf3Q9QXK7 Cabp2-201ENSMUST00000159148 1030 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Cpsf3Q9QXK7 Tmem52-204ENSMUST00000178188 908 ntAPPRIS ALT2 TSL 2 BASIC13.93□□□□□ -0.18
Cpsf3Q9QXK7 Tmem52-205ENSMUST00000178238 968 ntAPPRIS P4 TSL 1 (best) BASIC13.93□□□□□ -0.18
Cpsf3Q9QXK7 Gm3893-201ENSMUST00000178882 909 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
Cpsf3Q9QXK7 Hmgcll1-207ENSMUST00000183979 1136 ntTSL 5 BASIC13.93□□□□□ -0.18
Cpsf3Q9QXK7 Ggt5-203ENSMUST00000189972 648 ntTSL 3 BASIC13.93□□□□□ -0.18
Cpsf3Q9QXK7 Gm43438-201ENSMUST00000198133 379 ntBASIC13.93□□□□□ -0.18
Cpsf3Q9QXK7 Gm18054-201ENSMUST00000207539 555 ntBASIC13.93□□□□□ -0.18
Cpsf3Q9QXK7 Lim2-201ENSMUST00000004732 884 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Cpsf3Q9QXK7 Chia1-201ENSMUST00000079132 1681 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Cpsf3Q9QXK7 Ppfia4-201ENSMUST00000168515 6067 ntAPPRIS P2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Cpsf3Q9QXK7 Suv39h1-203ENSMUST00000115638 3116 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Cpsf3Q9QXK7 Lrig2-201ENSMUST00000046316 7099 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
Cpsf3Q9QXK7 Aamp-202ENSMUST00000178235 1756 ntAPPRIS ALT1 TSL 5 BASIC13.93□□□□□ -0.18
Cpsf3Q9QXK7 Kcnh7-202ENSMUST00000112452 2849 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Cpsf3Q9QXK7 Rasd2-202ENSMUST00000139848 2810 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Cpsf3Q9QXK7 Ahdc1-203ENSMUST00000105915 6341 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Cpsf3Q9QXK7 Ccrl2-203ENSMUST00000199839 1864 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Cpsf3Q9QXK7 Ifnar2-201ENSMUST00000023693 3047 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
Cpsf3Q9QXK7 Kifc1-204ENSMUST00000173492 2350 ntAPPRIS P2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Cpsf3Q9QXK7 Bcs1l-203ENSMUST00000113733 1488 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Cpsf3Q9QXK7 Pacrg-201ENSMUST00000041463 1475 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Cpsf3Q9QXK7 Laptm5-207ENSMUST00000151698 2600 ntAPPRIS P2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Cpsf3Q9QXK7 Hmox2-201ENSMUST00000004172 1730 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Cpsf3Q9QXK7 Saa3-202ENSMUST00000210913 2200 ntTSL 3 BASIC13.92□□□□□ -0.18
Cpsf3Q9QXK7 Eln-201ENSMUST00000015138 3853 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Cpsf3Q9QXK7 Xrra1-201ENSMUST00000036155 2731 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Cpsf3Q9QXK7 Mirg-202ENSMUST00000181543 1300 ntTSL 5 BASIC13.92□□□□□ -0.18
Cpsf3Q9QXK7 Mtnr1a-201ENSMUST00000067984 1576 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Cpsf3Q9QXK7 Trp53-202ENSMUST00000108657 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Cpsf3Q9QXK7 Itgb4-202ENSMUST00000068981 5584 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
Cpsf3Q9QXK7 Vipr1-201ENSMUST00000035115 4902 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Cpsf3Q9QXK7 Clstn2-202ENSMUST00000162295 4174 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
Cpsf3Q9QXK7 Eme1-201ENSMUST00000039949 2444 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Cpsf3Q9QXK7 Grm6-201ENSMUST00000000631 4291 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
Cpsf3Q9QXK7 Oraov1-201ENSMUST00000033388 2015 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
Cpsf3Q9QXK7 Gm3693-201ENSMUST00000182077 2865 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Cpsf3Q9QXK7 Dppa4-202ENSMUST00000096045 1534 ntAPPRIS P4 TSL 1 (best) BASIC13.92□□□□□ -0.18
Cpsf3Q9QXK7 Pphln1-204ENSMUST00000165935 3473 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Cpsf3Q9QXK7 Pkig-203ENSMUST00000109400 1059 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Cpsf3Q9QXK7 Nmi-202ENSMUST00000112705 1130 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Cpsf3Q9QXK7 Polr3c-202ENSMUST00000125183 923 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Cpsf3Q9QXK7 Gm12347-201ENSMUST00000127883 470 ntTSL 3 BASIC13.92□□□□□ -0.18
Cpsf3Q9QXK7 Gm7809-201ENSMUST00000153199 742 ntBASIC13.92□□□□□ -0.18
Cpsf3Q9QXK7 Gm16379-201ENSMUST00000161469 348 ntBASIC13.92□□□□□ -0.18
Cpsf3Q9QXK7 4930516B21Rik-201ENSMUST00000181600 1195 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Cpsf3Q9QXK7 Gm38002-201ENSMUST00000193255 180 ntBASIC13.92□□□□□ -0.18
Cpsf3Q9QXK7 Gm8762-201ENSMUST00000193486 339 ntBASIC13.92□□□□□ -0.18
Cpsf3Q9QXK7 Gm42693-201ENSMUST00000196779 631 ntBASIC13.92□□□□□ -0.18
Cpsf3Q9QXK7 Fam168a-206ENSMUST00000208013 1129 ntTSL 5 BASIC13.92□□□□□ -0.18
Cpsf3Q9QXK7 AC160029.2-201ENSMUST00000218285 548 ntTSL 3 BASIC13.92□□□□□ -0.18
Cpsf3Q9QXK7 Lrp8os2-204ENSMUST00000188737 3078 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Cpsf3Q9QXK7 Gm36995-201ENSMUST00000126170 5727 ntTSL 2 BASIC13.92□□□□□ -0.18
Cpsf3Q9QXK7 Slc6a18-210ENSMUST00000223074 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Cpsf3Q9QXK7 Dennd4b-201ENSMUST00000098914 5423 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Cpsf3Q9QXK7 Ube2a-201ENSMUST00000016452 1732 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
Cpsf3Q9QXK7 Anks1b-231ENSMUST00000183136 2786 ntTSL 5 BASIC13.92□□□□□ -0.18
Cpsf3Q9QXK7 Mknk1-201ENSMUST00000019677 2543 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Retrieved 100 of 76,532 protein–RNA pairs in 45 ms