Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Sacs-202ENSMUST00000119509 3468 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
Ddx56Q9D0R4 Ska1-202ENSMUST00000177604 2605 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Ddx56Q9D0R4 Rhot1-204ENSMUST00000092857 3687 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
Ddx56Q9D0R4 Fam49b-201ENSMUST00000063838 3797 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Ddx56Q9D0R4 Zc3hc1-210ENSMUST00000152391 1673 ntTSL 5 BASIC13.65□□□□□ -0.22
Ddx56Q9D0R4 Hgs-202ENSMUST00000106203 2901 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
Ddx56Q9D0R4 Hgs-201ENSMUST00000026900 2908 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Ddx56Q9D0R4 Agt-201ENSMUST00000063278 1891 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Ddx56Q9D0R4 Szrd1-203ENSMUST00000102487 3244 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Ddx56Q9D0R4 Stox2-201ENSMUST00000079195 10467 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Ddx56Q9D0R4 Ebna1bp2-201ENSMUST00000030501 2960 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Ddx56Q9D0R4 Syt2-204ENSMUST00000188842 3386 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.23
Ddx56Q9D0R4 Per2-201ENSMUST00000069620 5833 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.23
Ddx56Q9D0R4 Syngr2-202ENSMUST00000120928 1402 ntTSL 2 BASIC13.64□□□□□ -0.23
Ddx56Q9D0R4 Gm33543-203ENSMUST00000211096 1722 ntAPPRIS P5 TSL 5 BASIC13.64□□□□□ -0.23
Ddx56Q9D0R4 Gm26519-201ENSMUST00000181193 2249 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Ddx56Q9D0R4 Ckm-203ENSMUST00000208710 2742 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Ddx56Q9D0R4 Sh3bp2-207ENSMUST00000179943 2935 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
Ddx56Q9D0R4 Ddx19b-202ENSMUST00000065784 3104 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Ddx56Q9D0R4 Mul1-202ENSMUST00000105813 3944 ntTSL 5 BASIC13.64□□□□□ -0.23
Ddx56Q9D0R4 C77080-203ENSMUST00000106051 5049 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Ddx56Q9D0R4 C77080-202ENSMUST00000097873 5033 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Ddx56Q9D0R4 Prkce-201ENSMUST00000097274 3161 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Ddx56Q9D0R4 Spock3-202ENSMUST00000117377 3066 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Ddx56Q9D0R4 Pitpnm2-204ENSMUST00000159677 1690 ntTSL 5 BASIC13.64□□□□□ -0.23
Ddx56Q9D0R4 Slamf8-201ENSMUST00000065679 1659 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Ddx56Q9D0R4 Vipr1-201ENSMUST00000035115 4902 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Ddx56Q9D0R4 Zfp236-201ENSMUST00000171071 9626 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Ddx56Q9D0R4 Gm8805-201ENSMUST00000117848 313 ntBASIC13.64□□□□□ -0.23
Ddx56Q9D0R4 Gm16175-201ENSMUST00000128181 248 ntTSL 3 BASIC13.64□□□□□ -0.23
Ddx56Q9D0R4 Nat8f4-202ENSMUST00000159755 1129 ntTSL 2 BASIC13.64□□□□□ -0.23
Ddx56Q9D0R4 Gm24196-201ENSMUST00000179161 110 ntBASIC13.64□□□□□ -0.23
Ddx56Q9D0R4 Hax1-207ENSMUST00000198782 855 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
Ddx56Q9D0R4 AC151971.1-201ENSMUST00000217329 993 ntTSL 5 BASIC13.64□□□□□ -0.23
Ddx56Q9D0R4 Lats2-202ENSMUST00000038381 933 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Ddx56Q9D0R4 Mrps17-201ENSMUST00000042191 832 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Ddx56Q9D0R4 Nup37-201ENSMUST00000052355 1267 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Ddx56Q9D0R4 Tmem107-201ENSMUST00000075980 779 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Ddx56Q9D0R4 Aacs-201ENSMUST00000031445 3239 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Ddx56Q9D0R4 Kdm4b-201ENSMUST00000025036 4577 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Ddx56Q9D0R4 Usp19-203ENSMUST00000166103 4473 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Ddx56Q9D0R4 Map1lc3b-201ENSMUST00000034270 2532 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Ddx56Q9D0R4 Npepps-215ENSMUST00000167806 2307 ntTSL 5 BASIC13.64□□□□□ -0.23
Ddx56Q9D0R4 Zc3h7b-201ENSMUST00000109554 5958 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Ddx56Q9D0R4 Dennd6b-201ENSMUST00000078953 4607 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Ddx56Q9D0R4 Plekha5-212ENSMUST00000204876 1928 ntTSL 5 BASIC13.64□□□□□ -0.23
Ddx56Q9D0R4 Prrt3-205ENSMUST00000205170 1903 ntAPPRIS ALT2 TSL 2 BASIC13.64□□□□□ -0.23
Ddx56Q9D0R4 Gm13288-201ENSMUST00000094977 2850 ntAPPRIS P1 BASIC13.64□□□□□ -0.23
Ddx56Q9D0R4 Gm36500-201ENSMUST00000221821 1626 ntTSL 5 BASIC13.64□□□□□ -0.23
Ddx56Q9D0R4 Exd2-201ENSMUST00000038185 3310 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Ddx56Q9D0R4 Arhgap10-202ENSMUST00000210519 2295 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Ddx56Q9D0R4 Frzb-201ENSMUST00000028389 3149 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Ddx56Q9D0R4 Ccdc94-201ENSMUST00000086869 1311 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Ddx56Q9D0R4 Emd-202ENSMUST00000088313 1338 ntTSL 2 BASIC13.64□□□□□ -0.23
Ddx56Q9D0R4 Rnf185-201ENSMUST00000064364 2906 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Ddx56Q9D0R4 Trp53i11-202ENSMUST00000111266 2703 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Ddx56Q9D0R4 Apc2-202ENSMUST00000105359 9173 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
Ddx56Q9D0R4 Plk-ps1-201ENSMUST00000119494 1787 ntBASIC13.63□□□□□ -0.23
Ddx56Q9D0R4 Ppp4r3b-202ENSMUST00000102856 2410 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Ddx56Q9D0R4 Gm29724-201ENSMUST00000214688 3062 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Ddx56Q9D0R4 Cap2-201ENSMUST00000021802 3713 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Ddx56Q9D0R4 Ggnbp1-203ENSMUST00000133257 5012 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
Ddx56Q9D0R4 Asxl1-201ENSMUST00000109790 6968 ntAPPRIS P2 TSL 5 BASIC13.63□□□□□ -0.23
Ddx56Q9D0R4 Krt17-201ENSMUST00000080893 1551 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Ddx56Q9D0R4 Tor1aip2-207ENSMUST00000128941 2925 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Ddx56Q9D0R4 Klhdc7b-201ENSMUST00000166926 1818 ntAPPRIS P2 BASIC13.63□□□□□ -0.23
Ddx56Q9D0R4 Azi2-201ENSMUST00000044454 3396 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Ddx56Q9D0R4 Ins2-204ENSMUST00000105932 455 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Ddx56Q9D0R4 Rhox2b-201ENSMUST00000115191 799 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Ddx56Q9D0R4 Gm12203-201ENSMUST00000118235 598 ntBASIC13.63□□□□□ -0.23
Ddx56Q9D0R4 Gm12209-201ENSMUST00000120089 596 ntBASIC13.63□□□□□ -0.23
Ddx56Q9D0R4 P2rx4-204ENSMUST00000139631 1030 ntTSL 5 BASIC13.63□□□□□ -0.23
Ddx56Q9D0R4 P2rx4-206ENSMUST00000142664 1111 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Ddx56Q9D0R4 Oprm1-229ENSMUST00000152674 1179 ntTSL 3 BASIC13.63□□□□□ -0.23
Ddx56Q9D0R4 Gm17232-201ENSMUST00000164515 453 ntTSL 2 BASIC13.63□□□□□ -0.23
Ddx56Q9D0R4 Gm27230-202ENSMUST00000184671 857 ntTSL 3 BASIC13.63□□□□□ -0.23
Ddx56Q9D0R4 Gm27486-201ENSMUST00000184923 80 ntBASIC13.63□□□□□ -0.23
Ddx56Q9D0R4 Gm7653-201ENSMUST00000214567 508 ntBASIC13.63□□□□□ -0.23
Ddx56Q9D0R4 Ins2-201ENSMUST00000000220 478 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Ddx56Q9D0R4 Mrto4-ps1-201ENSMUST00000220565 721 ntBASIC13.63□□□□□ -0.23
Ddx56Q9D0R4 AC159263.1-201ENSMUST00000220746 482 ntTSL 5 BASIC13.63□□□□□ -0.23
Ddx56Q9D0R4 AC134254.1-201ENSMUST00000221362 167 ntBASIC13.63□□□□□ -0.23
Ddx56Q9D0R4 Bcdin3d-201ENSMUST00000040313 1271 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Ddx56Q9D0R4 Rnf214-205ENSMUST00000160699 2287 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
Ddx56Q9D0R4 Dnajc14-207ENSMUST00000219508 2298 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Ddx56Q9D0R4 4933431E20Rik-209ENSMUST00000146337 1636 ntTSL 5 BASIC13.63□□□□□ -0.23
Ddx56Q9D0R4 Lrp1-202ENSMUST00000118455 2097 ntTSL 5 BASIC13.63□□□□□ -0.23
Ddx56Q9D0R4 Slc22a18-201ENSMUST00000052348 1525 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Ddx56Q9D0R4 Cngb1-201ENSMUST00000093268 1512 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Ddx56Q9D0R4 Polr3e-202ENSMUST00000106483 3001 ntAPPRIS P3 TSL 5 BASIC13.63□□□□□ -0.23
Ddx56Q9D0R4 Pphln1-202ENSMUST00000068457 3816 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Ddx56Q9D0R4 Gadl1-203ENSMUST00000121770 1763 ntAPPRIS P2 TSL 5 BASIC13.63□□□□□ -0.23
Ddx56Q9D0R4 Nr2c2-201ENSMUST00000113460 7647 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
Ddx56Q9D0R4 Mrpl50-201ENSMUST00000057829 2114 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Ddx56Q9D0R4 Gm13050-201ENSMUST00000122149 1345 ntBASIC13.63□□□□□ -0.23
Ddx56Q9D0R4 Zfp64-203ENSMUST00000109162 2848 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
Ddx56Q9D0R4 Ccdc22-201ENSMUST00000033483 2353 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Ddx56Q9D0R4 Ebf1-202ENSMUST00000101326 3422 ntAPPRIS ALT1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Ddx56Q9D0R4 Afap1l1-201ENSMUST00000120472 3444 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Ddx56Q9D0R4 Fetub-201ENSMUST00000023587 1573 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Retrieved 100 of 76,532 protein–RNA pairs in 32.2 ms