Protein–RNA interactions for Protein: Q9CWT6

Ddx28, Probable ATP-dependent RNA helicase DDX28, mousemouse

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx28Q9CWT6 Tnn-202ENSMUST00000131919 3987 ntTSL 5 BASIC12.19□□□□□ -0.46
Ddx28Q9CWT6 Gm17435-202ENSMUST00000212699 1998 ntBASIC12.19□□□□□ -0.46
Ddx28Q9CWT6 Dbndd1-203ENSMUST00000177240 1463 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Ddx28Q9CWT6 B3gntl1-201ENSMUST00000062654 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Ddx28Q9CWT6 Man2c1-215ENSMUST00000161182 2909 ntTSL 5 BASIC12.19□□□□□ -0.46
Ddx28Q9CWT6 Setdb1-202ENSMUST00000107170 4622 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
Ddx28Q9CWT6 Pla2g4c-204ENSMUST00000167232 2154 ntAPPRIS ALT2 TSL 5 BASIC12.19□□□□□ -0.46
Ddx28Q9CWT6 Arhgap4-203ENSMUST00000114405 6299 ntAPPRIS ALT2 TSL 5 BASIC12.19□□□□□ -0.46
Ddx28Q9CWT6 Usp19-204ENSMUST00000178075 4512 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Ddx28Q9CWT6 Usp19-202ENSMUST00000085044 4520 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Ddx28Q9CWT6 Nr2c2-202ENSMUST00000113463 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Ddx28Q9CWT6 Pdia4-201ENSMUST00000077290 2399 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Ddx28Q9CWT6 Mcm9-206ENSMUST00000220007 3513 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Ddx28Q9CWT6 Lypd6-202ENSMUST00000112712 3495 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
Ddx28Q9CWT6 Plekhg2-201ENSMUST00000094644 4623 ntAPPRIS P3 TSL 1 (best) BASIC12.18□□□□□ -0.46
Ddx28Q9CWT6 Lmbr1-202ENSMUST00000179191 4836 ntTSL 5 BASIC12.18□□□□□ -0.46
Ddx28Q9CWT6 Slc26a5-201ENSMUST00000030878 2962 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Ddx28Q9CWT6 Hspb8-201ENSMUST00000036991 1816 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Ddx28Q9CWT6 Lnx1-205ENSMUST00000117525 2259 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Ddx28Q9CWT6 Poli-205ENSMUST00000161542 2736 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Ddx28Q9CWT6 Lingo4-201ENSMUST00000050975 3645 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Ddx28Q9CWT6 Bpifa6-201ENSMUST00000109753 1572 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Ddx28Q9CWT6 Umad1-204ENSMUST00000159433 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Ddx28Q9CWT6 Galnt6-202ENSMUST00000159715 3796 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Ddx28Q9CWT6 Adk-201ENSMUST00000045376 1782 ntAPPRIS P2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Ddx28Q9CWT6 Abra-201ENSMUST00000054742 1762 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Ddx28Q9CWT6 Olfr61-202ENSMUST00000210241 1348 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
Ddx28Q9CWT6 C1qtnf6-201ENSMUST00000023075 2402 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Ddx28Q9CWT6 AC159314.1-201ENSMUST00000216917 3485 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Ddx28Q9CWT6 Gad1-205ENSMUST00000130998 1705 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Ddx28Q9CWT6 Gm22189-201ENSMUST00000103822 86 ntBASIC12.18□□□□□ -0.46
Ddx28Q9CWT6 Nedd8-201ENSMUST00000010520 824 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Ddx28Q9CWT6 Pdpn-202ENSMUST00000119654 762 ntAPPRIS ALT2 TSL 3 BASIC12.18□□□□□ -0.46
Ddx28Q9CWT6 Rab15-204ENSMUST00000122419 856 ntTSL 5 BASIC12.18□□□□□ -0.46
Ddx28Q9CWT6 Esd-207ENSMUST00000176957 1117 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Ddx28Q9CWT6 Tac2-202ENSMUST00000179960 852 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Ddx28Q9CWT6 4833428L15Rik-201ENSMUST00000181230 1259 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Ddx28Q9CWT6 Prr29-203ENSMUST00000185986 983 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
Ddx28Q9CWT6 Selenoh-205ENSMUST00000189636 499 ntAPPRIS ALT2 TSL 3 BASIC12.18□□□□□ -0.46
Ddx28Q9CWT6 2900022M07Rik-201ENSMUST00000193912 1017 ntBASIC12.18□□□□□ -0.46
Ddx28Q9CWT6 Gm15411-202ENSMUST00000201913 668 ntTSL 3 BASIC12.18□□□□□ -0.46
Ddx28Q9CWT6 AC158987.1-201ENSMUST00000214586 961 ntTSL 5 BASIC12.18□□□□□ -0.46
Ddx28Q9CWT6 Tac2-201ENSMUST00000026466 678 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Ddx28Q9CWT6 1700018B08Rik-201ENSMUST00000034265 1084 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Ddx28Q9CWT6 Tpd52-201ENSMUST00000063496 697 ntTSL 2 BASIC12.18□□□□□ -0.46
Ddx28Q9CWT6 Gm3695-201ENSMUST00000087222 1009 ntBASIC12.18□□□□□ -0.46
Ddx28Q9CWT6 Wdr83-201ENSMUST00000093357 1238 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Ddx28Q9CWT6 BC003331-203ENSMUST00000097546 3174 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
Ddx28Q9CWT6 Car6-202ENSMUST00000105683 1460 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Ddx28Q9CWT6 Tiparp-201ENSMUST00000047906 4191 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Ddx28Q9CWT6 Sass6-206ENSMUST00000198386 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Ddx28Q9CWT6 Xlr-202ENSMUST00000067782 1860 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Ddx28Q9CWT6 Myoc-201ENSMUST00000028020 2074 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Ddx28Q9CWT6 Sgk3-202ENSMUST00000166384 3706 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Ddx28Q9CWT6 Pde8b-207ENSMUST00000162153 2474 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Ddx28Q9CWT6 Gm29455-201ENSMUST00000186504 2659 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Ddx28Q9CWT6 Arap1-204ENSMUST00000107010 5147 ntAPPRIS P2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Ddx28Q9CWT6 Aurkc-204ENSMUST00000208049 1401 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Ddx28Q9CWT6 Naaa-202ENSMUST00000159345 1629 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Ddx28Q9CWT6 Ddx46-202ENSMUST00000172272 5676 ntAPPRIS P2 TSL 5 BASIC12.18□□□□□ -0.46
Ddx28Q9CWT6 Parp3-202ENSMUST00000112479 2030 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Ddx28Q9CWT6 Hadhb-201ENSMUST00000026841 2033 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Ddx28Q9CWT6 Pitpnm3-202ENSMUST00000108508 6450 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Ddx28Q9CWT6 Brinp1-201ENSMUST00000030036 3212 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Ddx28Q9CWT6 Epm2aip1-202ENSMUST00000135807 4245 ntAPPRIS P1 TSL 2 BASIC12.18□□□□□ -0.46
Ddx28Q9CWT6 Sorbs1-203ENSMUST00000165212 2175 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
Ddx28Q9CWT6 Plin3-201ENSMUST00000019726 2159 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Ddx28Q9CWT6 C330018A13Rik-201ENSMUST00000127792 1599 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Ddx28Q9CWT6 Arl13b-201ENSMUST00000089289 3528 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
Ddx28Q9CWT6 Vit-201ENSMUST00000024880 2720 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Ddx28Q9CWT6 Slc8a2-201ENSMUST00000168693 4171 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Ddx28Q9CWT6 Nectin4-202ENSMUST00000094325 3245 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Ddx28Q9CWT6 Rab18-201ENSMUST00000097680 2257 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Ddx28Q9CWT6 Syt7-204ENSMUST00000223586 1344 ntBASIC12.17□□□□□ -0.46
Ddx28Q9CWT6 BC024139-201ENSMUST00000054022 2623 ntAPPRIS P2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Ddx28Q9CWT6 BC055324-201ENSMUST00000045876 3179 ntAPPRIS P2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Ddx28Q9CWT6 Pde3a-201ENSMUST00000043259 12302 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Ddx28Q9CWT6 Specc1-213ENSMUST00000202179 6676 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Ddx28Q9CWT6 Hvcn1-201ENSMUST00000072602 2790 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Ddx28Q9CWT6 Gm45799-201ENSMUST00000106785 367 ntAPPRIS ALT2 TSL 3 BASIC12.17□□□□□ -0.46
Ddx28Q9CWT6 Snap47-202ENSMUST00000120940 1192 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Ddx28Q9CWT6 4930417O22Rik-201ENSMUST00000123249 1184 ntTSL 2 BASIC12.17□□□□□ -0.46
Ddx28Q9CWT6 Gm16215-201ENSMUST00000161990 637 ntBASIC12.17□□□□□ -0.46
Ddx28Q9CWT6 Ube2i-208ENSMUST00000173084 1286 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Ddx28Q9CWT6 Gm38114-201ENSMUST00000191877 1232 ntBASIC12.17□□□□□ -0.46
Ddx28Q9CWT6 Snapc2-203ENSMUST00000208316 1190 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Ddx28Q9CWT6 Coq7-205ENSMUST00000209146 799 ntTSL 3 BASIC12.17□□□□□ -0.46
Ddx28Q9CWT6 Taldo1-201ENSMUST00000026576 1229 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Ddx28Q9CWT6 Cited1-201ENSMUST00000050551 901 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Ddx28Q9CWT6 Gm9797-201ENSMUST00000052902 613 ntBASIC12.17□□□□□ -0.46
Ddx28Q9CWT6 Gm648-201ENSMUST00000081133 1040 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Ddx28Q9CWT6 Arrdc5-201ENSMUST00000097303 1054 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Ddx28Q9CWT6 Dao-203ENSMUST00000161610 1633 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Ddx28Q9CWT6 Zfand4-202ENSMUST00000112900 3220 ntAPPRIS ALT2 TSL 5 BASIC12.17□□□□□ -0.46
Ddx28Q9CWT6 Pcdhb22-202ENSMUST00000192409 6609 ntAPPRIS P1 BASIC12.17□□□□□ -0.46
Ddx28Q9CWT6 Slc24a4-201ENSMUST00000079020 2337 ntAPPRIS P2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Ddx28Q9CWT6 Klk2-ps-202ENSMUST00000206865 2684 ntTSL 5 BASIC12.17□□□□□ -0.46
Ddx28Q9CWT6 Plekhm1-201ENSMUST00000041272 5968 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Ddx28Q9CWT6 Cntnap1-201ENSMUST00000103109 5440 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Ddx28Q9CWT6 Gm26735-201ENSMUST00000180992 2649 ntTSL 5 BASIC12.17□□□□□ -0.46
Retrieved 100 of 76,532 protein–RNA pairs in 34.9 ms