Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Fkbp2-202ENSMUST00000177752 627 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Smc1aQ9CU62 Mturn-202ENSMUST00000187701 503 ntTSL 5 BASIC14.53□□□□□ -0.08
Smc1aQ9CU62 Gm36634-201ENSMUST00000218356 1259 ntTSL 3 BASIC14.53□□□□□ -0.08
Smc1aQ9CU62 AC165254.1-201ENSMUST00000220736 599 ntTSL 5 BASIC14.53□□□□□ -0.08
Smc1aQ9CU62 AC166997.1-201ENSMUST00000225122 572 ntBASIC14.53□□□□□ -0.08
Smc1aQ9CU62 AC122459.1-201ENSMUST00000228373 885 ntBASIC14.53□□□□□ -0.08
Smc1aQ9CU62 Aldh9a1-201ENSMUST00000028004 2835 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Smc1aQ9CU62 Med25-211ENSMUST00000208551 2678 ntTSL 2 BASIC14.53□□□□□ -0.08
Smc1aQ9CU62 Galnt6-202ENSMUST00000159715 3796 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Smc1aQ9CU62 Capn5-202ENSMUST00000107112 2232 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Smc1aQ9CU62 Mpp4-210ENSMUST00000191200 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Smc1aQ9CU62 Ccdc134-201ENSMUST00000089174 2043 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Smc1aQ9CU62 Ptpn7-203ENSMUST00000187985 1990 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
Smc1aQ9CU62 Pigq-209ENSMUST00000140304 1835 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
Smc1aQ9CU62 Rtn3-203ENSMUST00000088169 1709 ntTSL 5 BASIC14.52□□□□□ -0.08
Smc1aQ9CU62 B230319C09Rik-201ENSMUST00000063376 1689 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
Smc1aQ9CU62 Hectd2-208ENSMUST00000169036 3842 ntAPPRIS ALT1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Smc1aQ9CU62 C130012C08Rik-201ENSMUST00000194287 3665 ntBASIC14.52□□□□□ -0.08
Smc1aQ9CU62 Tifa-203ENSMUST00000164447 1538 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Smc1aQ9CU62 Acy1-201ENSMUST00000024031 1529 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Smc1aQ9CU62 Car6-202ENSMUST00000105683 1460 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
Smc1aQ9CU62 Pdss2-202ENSMUST00000159139 1467 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
Smc1aQ9CU62 Slc35e2-202ENSMUST00000105608 6291 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.08
Smc1aQ9CU62 Dera-207ENSMUST00000203693 1446 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
Smc1aQ9CU62 Trim26-210ENSMUST00000179968 3203 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.08
Smc1aQ9CU62 Fibin-201ENSMUST00000099626 2267 ntAPPRIS P1 BASIC14.52□□□□□ -0.08
Smc1aQ9CU62 Osbpl9-202ENSMUST00000084366 3134 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
Smc1aQ9CU62 Gm13050-201ENSMUST00000122149 1345 ntBASIC14.52□□□□□ -0.08
Smc1aQ9CU62 Edc3-201ENSMUST00000043990 5708 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Smc1aQ9CU62 Sesn3-204ENSMUST00000208222 9125 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Smc1aQ9CU62 Necab1-202ENSMUST00000108273 2135 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Smc1aQ9CU62 Gm14730-201ENSMUST00000122378 1045 ntBASIC14.52□□□□□ -0.09
Smc1aQ9CU62 Pyy-204ENSMUST00000177304 551 ntAPPRIS ALT2 TSL 2 BASIC14.52□□□□□ -0.09
Smc1aQ9CU62 Gm24196-201ENSMUST00000179161 110 ntBASIC14.52□□□□□ -0.09
Smc1aQ9CU62 Gm3809-201ENSMUST00000180973 1006 ntBASIC14.52□□□□□ -0.09
Smc1aQ9CU62 Gm7498-201ENSMUST00000203282 1084 ntBASIC14.52□□□□□ -0.09
Smc1aQ9CU62 Sit1-201ENSMUST00000030180 1228 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Smc1aQ9CU62 Taf1d-201ENSMUST00000034415 1148 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
Smc1aQ9CU62 Cmc2-201ENSMUST00000078589 523 ntTSL 2 BASIC14.52□□□□□ -0.09
Smc1aQ9CU62 Dnm1-202ENSMUST00000091089 3764 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Smc1aQ9CU62 Zscan22-203ENSMUST00000119989 2087 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Smc1aQ9CU62 2900005J15Rik-202ENSMUST00000171190 2025 ntBASIC14.52□□□□□ -0.09
Smc1aQ9CU62 Spin1-201ENSMUST00000095797 4434 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Smc1aQ9CU62 Tepsin-201ENSMUST00000026442 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
Smc1aQ9CU62 Gm17435-202ENSMUST00000212699 1998 ntBASIC14.52□□□□□ -0.09
Smc1aQ9CU62 Atp6v1b1-201ENSMUST00000006431 1999 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Smc1aQ9CU62 Ky-201ENSMUST00000039390 5837 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Smc1aQ9CU62 Dync1i1-204ENSMUST00000115559 2599 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
Smc1aQ9CU62 Smg7-203ENSMUST00000111836 3928 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
Smc1aQ9CU62 Gm26651-201ENSMUST00000181851 2325 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Smc1aQ9CU62 Slc26a5-201ENSMUST00000030878 2962 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Smc1aQ9CU62 Epb41l5-208ENSMUST00000191046 6870 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Smc1aQ9CU62 Eps15l1-203ENSMUST00000212121 2686 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Smc1aQ9CU62 Gramd1b-201ENSMUST00000045682 7488 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Smc1aQ9CU62 Psmb9-204ENSMUST00000174576 1351 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Smc1aQ9CU62 Ifnar2-201ENSMUST00000023693 3047 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
Smc1aQ9CU62 Creld2-201ENSMUST00000024042 1364 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Smc1aQ9CU62 Map4k2-201ENSMUST00000025897 4644 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Smc1aQ9CU62 Zmiz1os1-201ENSMUST00000156682 3469 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Smc1aQ9CU62 Afap1l1-201ENSMUST00000120472 3444 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Smc1aQ9CU62 Gm10327-201ENSMUST00000105222 1002 ntBASIC14.51□□□□□ -0.09
Smc1aQ9CU62 Myadml2os-201ENSMUST00000126642 1044 ntTSL 5 BASIC14.51□□□□□ -0.09
Smc1aQ9CU62 Smim5-201ENSMUST00000131566 700 ntTSL 2 BASIC14.51□□□□□ -0.09
Smc1aQ9CU62 Gm10863-204ENSMUST00000147620 776 ntTSL 3 BASIC14.51□□□□□ -0.09
Smc1aQ9CU62 C8g-201ENSMUST00000015227 822 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Smc1aQ9CU62 Gm20652-201ENSMUST00000177314 383 ntTSL 2 BASIC14.51□□□□□ -0.09
Smc1aQ9CU62 1700037C18Rik-205ENSMUST00000177323 915 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
Smc1aQ9CU62 Gm29741-201ENSMUST00000192667 421 ntBASIC14.51□□□□□ -0.09
Smc1aQ9CU62 Sox2ot-208ENSMUST00000197103 802 ntTSL 2 BASIC14.51□□□□□ -0.09
Smc1aQ9CU62 Gm44974-201ENSMUST00000206387 1279 ntBASIC14.51□□□□□ -0.09
Smc1aQ9CU62 AC159896.2-201ENSMUST00000214753 269 ntBASIC14.51□□□□□ -0.09
Smc1aQ9CU62 AC154319.1-201ENSMUST00000216330 312 ntBASIC14.51□□□□□ -0.09
Smc1aQ9CU62 Chd3os-203ENSMUST00000218008 1026 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Smc1aQ9CU62 AL589735.1-201ENSMUST00000224353 270 ntBASIC14.51□□□□□ -0.09
Smc1aQ9CU62 Cracr2a-201ENSMUST00000071563 1094 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Smc1aQ9CU62 Gm10012-201ENSMUST00000078252 192 ntBASIC14.51□□□□□ -0.09
Smc1aQ9CU62 Gm8399-201ENSMUST00000082300 1117 ntBASIC14.51□□□□□ -0.09
Smc1aQ9CU62 Mir497b-201ENSMUST00000093601 125 ntBASIC14.51□□□□□ -0.09
Smc1aQ9CU62 Zfp595-205ENSMUST00000171466 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Smc1aQ9CU62 Ak4-201ENSMUST00000102780 4186 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
Smc1aQ9CU62 Pgm3-201ENSMUST00000070064 2666 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Smc1aQ9CU62 Ptpn9-201ENSMUST00000034832 4101 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Smc1aQ9CU62 Nol4-208ENSMUST00000164893 2175 ntAPPRIS ALT1 TSL 5 BASIC14.51□□□□□ -0.09
Smc1aQ9CU62 Fbxl12-207ENSMUST00000151861 1668 ntTSL 2 BASIC14.51□□□□□ -0.09
Smc1aQ9CU62 Polr3g-201ENSMUST00000048993 3054 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Smc1aQ9CU62 Slc22a2-201ENSMUST00000046959 2115 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Smc1aQ9CU62 Asl-202ENSMUST00000159619 2088 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
Smc1aQ9CU62 Atp1a2-201ENSMUST00000085913 6227 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Smc1aQ9CU62 Adcyap1r1-206ENSMUST00000167234 1575 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
Smc1aQ9CU62 4931428F04Rik-203ENSMUST00000212219 2044 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Smc1aQ9CU62 Sh3bp2-201ENSMUST00000067638 2885 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
Smc1aQ9CU62 Eme1-201ENSMUST00000039949 2444 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Smc1aQ9CU62 Ankrd42-205ENSMUST00000138267 2827 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Smc1aQ9CU62 Coasy-202ENSMUST00000107308 2386 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Smc1aQ9CU62 4921507P07Rik-201ENSMUST00000031852 2378 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Smc1aQ9CU62 Tlk2-209ENSMUST00000145048 2776 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Smc1aQ9CU62 Zfp207-206ENSMUST00000165565 2311 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Smc1aQ9CU62 Hnrnpk-232ENSMUST00000225674 2704 ntBASIC14.5□□□□□ -0.09
Smc1aQ9CU62 Usf1-207ENSMUST00000160486 1878 ntTSL 2 BASIC14.5□□□□□ -0.09
Smc1aQ9CU62 Bckdha-201ENSMUST00000071329 1899 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Retrieved 100 of 76,532 protein–RNA pairs in 49.9 ms