Protein–RNA interactions for Protein: Q62018

Ctr9, RNA polymerase-associated protein CTR9 homolog, mousemouse

Known RBP Predictions only

Length 1,173 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ctr9Q62018 Kars-203ENSMUST00000164470 2189 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ctr9Q62018 Acad12-202ENSMUST00000111776 2269 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Ctr9Q62018 Cux2-210ENSMUST00000168288 4697 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
Ctr9Q62018 Fam71f2-201ENSMUST00000115286 1180 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ctr9Q62018 Cbfa2t2-ps1-201ENSMUST00000117165 730 ntBASIC15.31■□□□□ 0.04
Ctr9Q62018 Dctn6-202ENSMUST00000117243 962 ntTSL 3 BASIC15.31■□□□□ 0.04
Ctr9Q62018 1700030C14Rik-201ENSMUST00000139912 756 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Ctr9Q62018 Gm16379-201ENSMUST00000161469 348 ntBASIC15.31■□□□□ 0.04
Ctr9Q62018 Gm8762-201ENSMUST00000193486 339 ntBASIC15.31■□□□□ 0.04
Ctr9Q62018 Gm43133-201ENSMUST00000197472 463 ntBASIC15.31■□□□□ 0.04
Ctr9Q62018 Gm6013-201ENSMUST00000212264 699 ntBASIC15.31■□□□□ 0.04
Ctr9Q62018 AC160029.2-201ENSMUST00000218285 548 ntTSL 3 BASIC15.31■□□□□ 0.04
Ctr9Q62018 Gm36634-201ENSMUST00000218356 1259 ntTSL 3 BASIC15.31■□□□□ 0.04
Ctr9Q62018 AC140406.1-201ENSMUST00000226481 465 ntBASIC15.31■□□□□ 0.04
Ctr9Q62018 AC154462.2-201ENSMUST00000227519 370 ntBASIC15.31■□□□□ 0.04
Ctr9Q62018 Cdc26-201ENSMUST00000084525 819 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ctr9Q62018 Ccdc33-202ENSMUST00000098681 1093 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Ctr9Q62018 Stx4a-202ENSMUST00000121705 1316 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ctr9Q62018 Gm11661-201ENSMUST00000121761 1327 ntBASIC15.31■□□□□ 0.04
Ctr9Q62018 Arhgap28-201ENSMUST00000024840 5322 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ctr9Q62018 Ilvbl-208ENSMUST00000218875 3020 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Ctr9Q62018 Mtmr2-208ENSMUST00000155679 3088 ntTSL 5 BASIC15.31■□□□□ 0.04
Ctr9Q62018 4930423D22Rik-201ENSMUST00000221909 1674 ntBASIC15.31■□□□□ 0.04
Ctr9Q62018 Tulp2-201ENSMUST00000024233 1749 ntAPPRIS P5 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ctr9Q62018 Hnrnpf-210ENSMUST00000180341 1922 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
Ctr9Q62018 Phactr2-201ENSMUST00000079698 1934 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
Ctr9Q62018 Sema6c-202ENSMUST00000090823 4029 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ctr9Q62018 Slc34a3-201ENSMUST00000006638 2183 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ctr9Q62018 Sp2-201ENSMUST00000062652 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ctr9Q62018 Kirrel-203ENSMUST00000159976 7236 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ctr9Q62018 Hspa12b-201ENSMUST00000099349 3413 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ctr9Q62018 Nup98-206ENSMUST00000211235 3748 ntTSL 5 BASIC15.3■□□□□ 0.04
Ctr9Q62018 Sema4b-201ENSMUST00000032754 3949 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ctr9Q62018 Gk5-202ENSMUST00000122383 4455 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ctr9Q62018 Crybg2-213ENSMUST00000227683 5578 ntAPPRIS ALT2 BASIC15.3■□□□□ 0.04
Ctr9Q62018 Obsl1-201ENSMUST00000113565 3379 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Ctr9Q62018 1700012C08Rik-201ENSMUST00000141554 363 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Ctr9Q62018 Minos1-203ENSMUST00000143971 2549 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ctr9Q62018 Gm16124-201ENSMUST00000146938 516 ntTSL 2 BASIC15.3■□□□□ 0.04
Ctr9Q62018 Pdxk-ps-201ENSMUST00000159650 2342 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Ctr9Q62018 Ppm1h-208ENSMUST00000162969 811 ntTSL 3 BASIC15.3■□□□□ 0.04
Ctr9Q62018 1190007I07Rik-205ENSMUST00000185168 469 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
Ctr9Q62018 Whamm-203ENSMUST00000209044 1879 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Ctr9Q62018 Il15-202ENSMUST00000209363 1251 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ctr9Q62018 Actr8-204ENSMUST00000224797 2328 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
Ctr9Q62018 Mixl1-201ENSMUST00000027778 2294 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ctr9Q62018 Ucp3-201ENSMUST00000032958 2448 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ctr9Q62018 Ankrd34a-201ENSMUST00000058943 2583 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ctr9Q62018 Hapln4-201ENSMUST00000007738 3648 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ctr9Q62018 Rnf114-201ENSMUST00000078050 2502 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ctr9Q62018 Arl4a-205ENSMUST00000146905 3710 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ctr9Q62018 Slc38a7-204ENSMUST00000212270 3315 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ctr9Q62018 Adra1b-201ENSMUST00000067258 3331 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ctr9Q62018 B230206H07Rik-202ENSMUST00000134845 3269 ntTSL 5 BASIC15.3■□□□□ 0.04
Ctr9Q62018 Rasd2-202ENSMUST00000139848 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ctr9Q62018 Micu1-204ENSMUST00000165563 2442 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ctr9Q62018 Acbd5-213ENSMUST00000227809 1986 ntAPPRIS ALT2 BASIC15.29■□□□□ 0.04
Ctr9Q62018 Nagk-202ENSMUST00000113850 1918 ntTSL 5 BASIC15.29■□□□□ 0.04
Ctr9Q62018 Cecr2-202ENSMUST00000112686 9212 ntAPPRIS P2 TSL 5 BASIC15.29■□□□□ 0.04
Ctr9Q62018 Plekhb1-203ENSMUST00000107044 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ctr9Q62018 Exosc2-201ENSMUST00000038474 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ctr9Q62018 Fbn1-201ENSMUST00000028633 9847 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ctr9Q62018 Pacrg-201ENSMUST00000041463 1475 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ctr9Q62018 Gm9920-204ENSMUST00000148544 2752 ntTSL 2 BASIC15.29■□□□□ 0.04
Ctr9Q62018 Gm37885-201ENSMUST00000192568 1391 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Ctr9Q62018 Xrra1-201ENSMUST00000036155 2731 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ctr9Q62018 Gpr35-205ENSMUST00000186298 2647 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ctr9Q62018 Hectd1-201ENSMUST00000042052 8988 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
Ctr9Q62018 Gm15198-201ENSMUST00000117283 177 ntBASIC15.29■□□□□ 0.04
Ctr9Q62018 Gm11658-201ENSMUST00000120913 1008 ntBASIC15.29■□□□□ 0.04
Ctr9Q62018 Klk11-202ENSMUST00000171458 1260 ntAPPRIS P3 TSL 2 BASIC15.29■□□□□ 0.04
Ctr9Q62018 Gm22121-201ENSMUST00000175148 54 ntBASIC15.29■□□□□ 0.04
Ctr9Q62018 Gm2467-201ENSMUST00000182266 1010 ntBASIC15.29■□□□□ 0.04
Ctr9Q62018 Gm3890-201ENSMUST00000182416 207 ntBASIC15.29■□□□□ 0.04
Ctr9Q62018 Gm6981-201ENSMUST00000182467 1008 ntBASIC15.29■□□□□ 0.04
Ctr9Q62018 Gm9061-201ENSMUST00000182707 1006 ntBASIC15.29■□□□□ 0.04
Ctr9Q62018 Gm27230-202ENSMUST00000184671 857 ntTSL 3 BASIC15.29■□□□□ 0.04
Ctr9Q62018 5330425B07Rik-201ENSMUST00000196714 1027 ntBASIC15.29■□□□□ 0.04
Ctr9Q62018 AC159896.2-201ENSMUST00000214753 269 ntBASIC15.29■□□□□ 0.04
Ctr9Q62018 AC154319.1-201ENSMUST00000216330 312 ntBASIC15.29■□□□□ 0.04
Ctr9Q62018 Gm45930-201ENSMUST00000221330 292 ntBASIC15.29■□□□□ 0.04
Ctr9Q62018 AC144543.1-201ENSMUST00000221840 1064 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Ctr9Q62018 AL589735.1-201ENSMUST00000224353 270 ntBASIC15.29■□□□□ 0.04
Ctr9Q62018 Olfr463-201ENSMUST00000081417 936 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
Ctr9Q62018 Rbpjl-201ENSMUST00000017151 2456 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ctr9Q62018 Pigh-201ENSMUST00000072154 2339 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ctr9Q62018 Il1rapl2-202ENSMUST00000113063 3437 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ctr9Q62018 Kcnd3-201ENSMUST00000079169 2102 ntAPPRIS P4 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ctr9Q62018 Rpsa-201ENSMUST00000035105 1938 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ctr9Q62018 Nfyc-203ENSMUST00000118902 1887 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ctr9Q62018 Pi4kb-201ENSMUST00000072287 3692 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ctr9Q62018 Rubcn-204ENSMUST00000119810 3371 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
Ctr9Q62018 Gm44241-201ENSMUST00000203230 1662 ntBASIC15.28■□□□□ 0.04
Ctr9Q62018 Begain-204ENSMUST00000209829 3272 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
Ctr9Q62018 Hid1-201ENSMUST00000044152 3236 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ctr9Q62018 Actn4-201ENSMUST00000068045 3877 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ctr9Q62018 Mrpl50-201ENSMUST00000057829 2114 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ctr9Q62018 Cacna2d2-204ENSMUST00000166799 3474 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
Ctr9Q62018 Cpxm2-201ENSMUST00000033149 3498 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ctr9Q62018 Grk6-203ENSMUST00000224118 1997 ntAPPRIS ALT2 BASIC15.28■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 58 ms