Protein–RNA interactions for Protein: Q61371

Ift88, Intraflagellar transport protein 88 homolog, mousemouse

Predictions only

Length 824 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ift88Q61371 Cbfa2t2-ps1-201ENSMUST00000117165 730 ntBASIC14.35□□□□□ -0.11
Ift88Q61371 Gm5303-201ENSMUST00000117943 1252 ntBASIC14.35□□□□□ -0.11
Ift88Q61371 Gm11978-201ENSMUST00000122315 466 ntBASIC14.35□□□□□ -0.11
Ift88Q61371 1700060J05Rik-201ENSMUST00000138377 1060 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Ift88Q61371 Gm42612-201ENSMUST00000197986 623 ntBASIC14.35□□□□□ -0.11
Ift88Q61371 Gm43170-201ENSMUST00000199827 612 ntBASIC14.35□□□□□ -0.11
Ift88Q61371 Ube2a-205ENSMUST00000201068 1298 ntTSL 5 BASIC14.35□□□□□ -0.11
Ift88Q61371 Snapc2-203ENSMUST00000208316 1190 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Ift88Q61371 Hcfc1r1-201ENSMUST00000024697 946 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Ift88Q61371 Gdpd3-201ENSMUST00000032944 1148 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Ift88Q61371 Lin37-201ENSMUST00000043975 998 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Ift88Q61371 Cnn1-201ENSMUST00000001384 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Ift88Q61371 Pex2-204ENSMUST00000165309 2038 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
Ift88Q61371 Zbtb1-201ENSMUST00000042779 12190 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Ift88Q61371 Git1-201ENSMUST00000037285 3512 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Ift88Q61371 Ecsit-201ENSMUST00000098937 1673 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Ift88Q61371 Camk4-201ENSMUST00000042868 12331 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Ift88Q61371 Phactr3-201ENSMUST00000103065 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Ift88Q61371 Scube2-201ENSMUST00000007423 3571 ntTSL 2 BASIC14.35□□□□□ -0.11
Ift88Q61371 Stard5-202ENSMUST00000117410 2832 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Ift88Q61371 Gprc5a-201ENSMUST00000050104 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Ift88Q61371 Stk33-203ENSMUST00000121378 1304 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Ift88Q61371 Sde2-201ENSMUST00000038091 3213 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Ift88Q61371 Rfc2-201ENSMUST00000023867 4995 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Ift88Q61371 Sgk3-201ENSMUST00000097826 2728 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Ift88Q61371 Wwox-203ENSMUST00000109108 1771 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Ift88Q61371 Gadl1-203ENSMUST00000121770 1763 ntAPPRIS P2 TSL 5 BASIC14.34□□□□□ -0.11
Ift88Q61371 Parp3-202ENSMUST00000112479 2030 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ift88Q61371 Reln-201ENSMUST00000062372 10885 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
Ift88Q61371 Kdm4a-202ENSMUST00000097911 4550 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ift88Q61371 Gstt3-201ENSMUST00000001715 1880 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ift88Q61371 Rnf220-202ENSMUST00000094853 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ift88Q61371 Ibtk-201ENSMUST00000039213 5650 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ift88Q61371 Cyb5rl-203ENSMUST00000106758 2516 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Ift88Q61371 Elf1-201ENSMUST00000040131 4235 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ift88Q61371 Gm42748-201ENSMUST00000199354 2341 ntBASIC14.34□□□□□ -0.11
Ift88Q61371 Dlk1-202ENSMUST00000109841 879 ntTSL 5 BASIC14.34□□□□□ -0.11
Ift88Q61371 Gm15371-201ENSMUST00000117057 784 ntBASIC14.34□□□□□ -0.11
Ift88Q61371 Qdpr-202ENSMUST00000117425 1231 ntTSL 3 BASIC14.34□□□□□ -0.11
Ift88Q61371 Gm20499-201ENSMUST00000140374 444 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
Ift88Q61371 Gm12212-201ENSMUST00000141032 378 ntTSL 3 BASIC14.34□□□□□ -0.11
Ift88Q61371 AI467606-202ENSMUST00000206102 832 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Ift88Q61371 Brk1-201ENSMUST00000035725 1095 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ift88Q61371 Gm11937-201ENSMUST00000076478 396 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
Ift88Q61371 Odf3l2-201ENSMUST00000095464 1248 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ift88Q61371 Ttc34-201ENSMUST00000050220 3200 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ift88Q61371 Prkar1b-203ENSMUST00000110890 2626 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ift88Q61371 Pdp1-203ENSMUST00000108297 4201 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ift88Q61371 Pbld2-201ENSMUST00000020262 2212 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ift88Q61371 Parp16-201ENSMUST00000069000 2482 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ift88Q61371 Usp19-210ENSMUST00000193678 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ift88Q61371 Ocrl-203ENSMUST00000115020 3210 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Ift88Q61371 AC159195.1-201ENSMUST00000225867 2086 ntBASIC14.34□□□□□ -0.11
Ift88Q61371 Bach2-201ENSMUST00000037416 3462 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
Ift88Q61371 Zfp41-201ENSMUST00000054555 3736 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Ift88Q61371 Pak1-201ENSMUST00000033040 3065 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Ift88Q61371 Gm16070-203ENSMUST00000155588 1902 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
Ift88Q61371 Arnt-203ENSMUST00000102749 2699 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ift88Q61371 Dolpp1-202ENSMUST00000113612 1958 ntTSL 3 BASIC14.33□□□□□ -0.12
Ift88Q61371 Cdk7-201ENSMUST00000091299 1988 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ift88Q61371 Nfkb2-202ENSMUST00000111881 3205 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ift88Q61371 Ccng1-201ENSMUST00000020576 3512 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ift88Q61371 Mrto4-202ENSMUST00000102503 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ift88Q61371 Spaca3-202ENSMUST00000103223 947 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ift88Q61371 Rgs20-203ENSMUST00000119256 883 ntAPPRIS ALT2 TSL 3 BASIC14.33□□□□□ -0.12
Ift88Q61371 4930456L15Rik-201ENSMUST00000145577 1185 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Ift88Q61371 Lgals3-203ENSMUST00000146468 1072 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ift88Q61371 Gm26894-201ENSMUST00000180828 1134 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Ift88Q61371 1700022A21Rik-201ENSMUST00000182745 1051 ntBASIC14.33□□□□□ -0.12
Ift88Q61371 AC154305.4-201ENSMUST00000224520 614 ntBASIC14.33□□□□□ -0.12
Ift88Q61371 Cyct-201ENSMUST00000028430 655 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ift88Q61371 Srd5a2-201ENSMUST00000043458 854 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ift88Q61371 Ccng2-202ENSMUST00000121127 2570 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ift88Q61371 Tmem132a-202ENSMUST00000120524 3895 ntTSL 5 BASIC14.33□□□□□ -0.12
Ift88Q61371 Gm4858-202ENSMUST00000194595 1810 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Ift88Q61371 Zfp148-202ENSMUST00000165418 9431 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ift88Q61371 Rbm20-204ENSMUST00000164202 6592 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
Ift88Q61371 Cab39-201ENSMUST00000097666 2369 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
Ift88Q61371 Ky-201ENSMUST00000039390 5837 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ift88Q61371 Olfr667-202ENSMUST00000217177 2695 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
Ift88Q61371 1810008I18Rik-201ENSMUST00000185464 2419 ntBASIC14.33□□□□□ -0.12
Ift88Q61371 Tubb2a-201ENSMUST00000056427 1610 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ift88Q61371 Plekha5-212ENSMUST00000204876 1928 ntTSL 5 BASIC14.33□□□□□ -0.12
Ift88Q61371 Pex19-201ENSMUST00000075895 1917 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ift88Q61371 Fam214b-205ENSMUST00000107959 3060 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ift88Q61371 Fam214b-201ENSMUST00000036462 3074 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ift88Q61371 Wnt7b-201ENSMUST00000023015 3371 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ift88Q61371 4930473A02Rik-202ENSMUST00000136793 1409 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Ift88Q61371 3110082I17Rik-201ENSMUST00000066052 1429 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ift88Q61371 Sun2-202ENSMUST00000089311 3709 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ift88Q61371 AI661453-202ENSMUST00000150819 4866 ntAPPRIS P2 TSL 5 BASIC14.32□□□□□ -0.12
Ift88Q61371 Mcpt9-201ENSMUST00000095798 2000 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ift88Q61371 Gnai3-201ENSMUST00000000001 3262 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ift88Q61371 Pfkfb3-204ENSMUST00000114844 2107 ntTSL 5 BASIC14.32□□□□□ -0.12
Ift88Q61371 Mamdc4-202ENSMUST00000114223 3998 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
Ift88Q61371 Spryd7-201ENSMUST00000022497 4002 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ift88Q61371 Slc23a4-201ENSMUST00000044387 2175 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Ift88Q61371 Gtf2i-203ENSMUST00000111261 4381 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
Ift88Q61371 Gm37269-201ENSMUST00000193906 1891 ntBASIC14.32□□□□□ -0.12
Ift88Q61371 Pex2-206ENSMUST00000195855 1587 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 31.7 ms