Protein–RNA interactions for Protein: Q61124

Cln3, Battenin, mousemouse

Predictions only

Length 438 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cln3Q61124 Hsp90b1-201ENSMUST00000020238 2825 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Cln3Q61124 Gm43823-201ENSMUST00000197391 1808 ntBASIC14.18□□□□□ -0.14
Cln3Q61124 Camta1-203ENSMUST00000105668 4962 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Cln3Q61124 Nfatc2ip-201ENSMUST00000075671 3388 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Cln3Q61124 Dnmt3l-201ENSMUST00000000746 1676 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Cln3Q61124 Ciz1-203ENSMUST00000113332 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Cln3Q61124 Runx2-213ENSMUST00000162878 2987 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Cln3Q61124 Eps8l1-214ENSMUST00000171445 2975 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Cln3Q61124 Fam149b-211ENSMUST00000224930 2716 ntAPPRIS ALT2 BASIC14.17□□□□□ -0.14
Cln3Q61124 4930444K16Rik-201ENSMUST00000220438 1767 ntBASIC14.17□□□□□ -0.14
Cln3Q61124 Naa30-201ENSMUST00000037362 4464 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Cln3Q61124 Tssk5-201ENSMUST00000071119 1518 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Cln3Q61124 Hnrnpm-202ENSMUST00000114385 2550 ntTSL 2 BASIC14.17□□□□□ -0.14
Cln3Q61124 Slc36a1-202ENSMUST00000108867 1611 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Cln3Q61124 Gm11564-201ENSMUST00000105055 691 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
Cln3Q61124 1110018N20Rik-202ENSMUST00000147446 1162 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Cln3Q61124 Asb17os-201ENSMUST00000156292 496 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Cln3Q61124 Ighv5-7-201ENSMUST00000192302 244 ntBASIC14.17□□□□□ -0.14
Cln3Q61124 Rassf4-202ENSMUST00000203029 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Cln3Q61124 Gm8913-201ENSMUST00000209491 641 ntBASIC14.17□□□□□ -0.14
Cln3Q61124 Ift43-205ENSMUST00000222821 783 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Cln3Q61124 AC165260.3-202ENSMUST00000224550 1031 ntBASIC14.17□□□□□ -0.14
Cln3Q61124 AC154222.2-201ENSMUST00000225848 607 ntBASIC14.17□□□□□ -0.14
Cln3Q61124 Rpl18-201ENSMUST00000072503 679 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Cln3Q61124 Pitpnb-201ENSMUST00000086635 2761 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
Cln3Q61124 BB123696-201ENSMUST00000222580 2056 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Cln3Q61124 Gabrg3-201ENSMUST00000068394 1724 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Cln3Q61124 Kdelr1-205ENSMUST00000211716 1350 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Cln3Q61124 Zdhhc7-201ENSMUST00000034280 3069 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Cln3Q61124 Phf8-205ENSMUST00000112668 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Cln3Q61124 Kdm2b-201ENSMUST00000031435 3532 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Cln3Q61124 Cdkn1b-201ENSMUST00000003115 2393 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Cln3Q61124 Serpina16-202ENSMUST00000164148 1582 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
Cln3Q61124 Pitpnm2-204ENSMUST00000159677 1690 ntTSL 5 BASIC14.17□□□□□ -0.14
Cln3Q61124 Sbsn-201ENSMUST00000080518 2221 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
Cln3Q61124 Dnm1-201ENSMUST00000078352 3246 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Cln3Q61124 Shroom3-202ENSMUST00000113054 6401 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Cln3Q61124 Actn4-201ENSMUST00000068045 3877 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cln3Q61124 AC110816.2-201ENSMUST00000220360 1323 ntTSL 5 BASIC14.16□□□□□ -0.14
Cln3Q61124 Trhr2-201ENSMUST00000044123 1340 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cln3Q61124 Sass6-206ENSMUST00000198386 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cln3Q61124 Klhdc8b-207ENSMUST00000193286 2956 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cln3Q61124 CT010488.1-201ENSMUST00000214890 1522 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Cln3Q61124 Tmem251-201ENSMUST00000057416 3367 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cln3Q61124 Luc7l3-202ENSMUST00000107820 3478 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Cln3Q61124 Gpr88-201ENSMUST00000090473 3469 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cln3Q61124 Acad12-202ENSMUST00000111776 2269 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Cln3Q61124 Atp13a2-201ENSMUST00000037055 3956 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cln3Q61124 Gm20683-201ENSMUST00000176751 2790 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Cln3Q61124 Mir874-201ENSMUST00000104769 76 ntBASIC14.16□□□□□ -0.14
Cln3Q61124 Rhox2c-201ENSMUST00000115190 762 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Cln3Q61124 Gm14921-201ENSMUST00000118643 908 ntBASIC14.16□□□□□ -0.14
Cln3Q61124 Gm14999-201ENSMUST00000121039 624 ntBASIC14.16□□□□□ -0.14
Cln3Q61124 Gm14832-201ENSMUST00000121289 322 ntBASIC14.16□□□□□ -0.14
Cln3Q61124 C130026I21Rik-205ENSMUST00000161267 652 ntAPPRIS ALT2 TSL 3 BASIC14.16□□□□□ -0.14
Cln3Q61124 Gm36991-201ENSMUST00000191800 648 ntBASIC14.16□□□□□ -0.14
Cln3Q61124 Gm37986-201ENSMUST00000193285 383 ntBASIC14.16□□□□□ -0.14
Cln3Q61124 Gm43050-201ENSMUST00000201062 338 ntTSL 2 BASIC14.16□□□□□ -0.14
Cln3Q61124 Gm31224-201ENSMUST00000212682 513 ntTSL 3 BASIC14.16□□□□□ -0.14
Cln3Q61124 Gm19324-201ENSMUST00000213229 1169 ntBASIC14.16□□□□□ -0.14
Cln3Q61124 Abhd14b-210ENSMUST00000217496 631 ntTSL 5 BASIC14.16□□□□□ -0.14
Cln3Q61124 Prr15l-202ENSMUST00000062172 1242 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cln3Q61124 Olfr450-201ENSMUST00000067503 933 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
Cln3Q61124 Rabep2-202ENSMUST00000106407 2234 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cln3Q61124 Rusc2-207ENSMUST00000131668 5093 ntTSL 5 BASIC14.16□□□□□ -0.14
Cln3Q61124 Crcp-201ENSMUST00000026608 1492 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cln3Q61124 Atp13a3-202ENSMUST00000100013 7310 ntAPPRIS P4 TSL 5 BASIC14.16□□□□□ -0.14
Cln3Q61124 Set-202ENSMUST00000102866 2824 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cln3Q61124 Smc5-202ENSMUST00000223934 3448 ntAPPRIS P2 BASIC14.16□□□□□ -0.14
Cln3Q61124 Wwox-202ENSMUST00000109107 2383 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Cln3Q61124 Phf21b-201ENSMUST00000016768 3377 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cln3Q61124 Gsdma2-201ENSMUST00000017355 1314 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Cln3Q61124 Tulp2-201ENSMUST00000024233 1749 ntAPPRIS P5 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cln3Q61124 Dpysl3-204ENSMUST00000121805 5484 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Cln3Q61124 Nat8f3-201ENSMUST00000050780 1821 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cln3Q61124 Gm10544-202ENSMUST00000181887 1923 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Cln3Q61124 Farsb-202ENSMUST00000170217 2036 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cln3Q61124 Nkain3-201ENSMUST00000102998 3098 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Cln3Q61124 Cdk5rap3-201ENSMUST00000103152 2250 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cln3Q61124 Acsf3-203ENSMUST00000212790 2171 ntAPPRIS P2 TSL 5 BASIC14.15□□□□□ -0.14
Cln3Q61124 Limd2-203ENSMUST00000106875 936 ntAPPRIS P1 TSL 3 BASIC14.15□□□□□ -0.14
Cln3Q61124 Nmb-202ENSMUST00000119428 678 ntAPPRIS ALT2 TSL 2 BASIC14.15□□□□□ -0.14
Cln3Q61124 Gm9083-201ENSMUST00000120423 819 ntBASIC14.15□□□□□ -0.14
Cln3Q61124 Rpsa-ps12-201ENSMUST00000120596 892 ntBASIC14.15□□□□□ -0.14
Cln3Q61124 Gm11630-201ENSMUST00000152825 382 ntTSL 2 BASIC14.15□□□□□ -0.14
Cln3Q61124 Mcpt8-201ENSMUST00000015594 836 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cln3Q61124 Gm27023-201ENSMUST00000182372 285 ntBASIC14.15□□□□□ -0.14
Cln3Q61124 Gm17087-201ENSMUST00000184183 471 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
Cln3Q61124 Gm44651-201ENSMUST00000207343 372 ntBASIC14.15□□□□□ -0.14
Cln3Q61124 Vmo1-201ENSMUST00000021179 672 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
Cln3Q61124 Rps12-203ENSMUST00000218107 584 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cln3Q61124 Zfp706-203ENSMUST00000226453 517 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
Cln3Q61124 Phactr3-201ENSMUST00000103065 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cln3Q61124 Ppm1g-201ENSMUST00000031032 2307 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cln3Q61124 Gm15459-201ENSMUST00000117405 1941 ntBASIC14.15□□□□□ -0.14
Cln3Q61124 Gm8355-201ENSMUST00000177767 1941 ntBASIC14.15□□□□□ -0.14
Cln3Q61124 Dnase1l1-201ENSMUST00000019232 1625 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cln3Q61124 Ptpn14-201ENSMUST00000027898 2666 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cln3Q61124 Zfp316-202ENSMUST00000161448 6891 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cln3Q61124 Cux2-210ENSMUST00000168288 4697 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 31.7 ms