Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Mdga2-201ENSMUST00000037181 9833 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Limch1Q3UH68 Tbx3-203ENSMUST00000121021 4777 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Limch1Q3UH68 Acin1-202ENSMUST00000022794 2365 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
Limch1Q3UH68 Cadm2-202ENSMUST00000120594 3248 ntAPPRIS ALT1 TSL 5 BASIC15.29■□□□□ 0.04
Limch1Q3UH68 Adamtsl4-202ENSMUST00000117782 4036 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Limch1Q3UH68 Ctbp2-209ENSMUST00000166439 1997 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Limch1Q3UH68 Prrt3-205ENSMUST00000205170 1903 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
Limch1Q3UH68 Spag1-201ENSMUST00000047348 3646 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Limch1Q3UH68 4930444K16Rik-201ENSMUST00000220438 1767 ntBASIC15.29■□□□□ 0.04
Limch1Q3UH68 Plekha7-203ENSMUST00000181998 5149 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Limch1Q3UH68 Mapk8ip3-206ENSMUST00000120035 4125 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Limch1Q3UH68 Ctgf-203ENSMUST00000176228 2490 ntTSL 2 BASIC15.28■□□□□ 0.04
Limch1Q3UH68 Afmid-201ENSMUST00000073388 2327 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Limch1Q3UH68 Armc8-201ENSMUST00000035043 4647 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Limch1Q3UH68 Dctn4-202ENSMUST00000223590 1530 ntBASIC15.28■□□□□ 0.04
Limch1Q3UH68 Evx1os-201ENSMUST00000125305 2916 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Limch1Q3UH68 Gm45338-207ENSMUST00000211499 1405 ntTSL 5 BASIC15.28■□□□□ 0.04
Limch1Q3UH68 Mark2-215ENSMUST00000168872 2124 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
Limch1Q3UH68 Prkcd-202ENSMUST00000112202 2005 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Limch1Q3UH68 Rbmx-203ENSMUST00000114730 2019 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
Limch1Q3UH68 Gm11661-201ENSMUST00000121761 1327 ntBASIC15.28■□□□□ 0.04
Limch1Q3UH68 Il4ra-201ENSMUST00000033004 5256 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Limch1Q3UH68 Esyt3-201ENSMUST00000042158 4483 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Limch1Q3UH68 Gm23931-201ENSMUST00000103842 109 ntBASIC15.28■□□□□ 0.04
Limch1Q3UH68 Folr1-205ENSMUST00000106986 1286 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Limch1Q3UH68 Gm5187-201ENSMUST00000117317 991 ntBASIC15.28■□□□□ 0.04
Limch1Q3UH68 Gm5687-201ENSMUST00000118252 640 ntBASIC15.28■□□□□ 0.04
Limch1Q3UH68 Gm11803-201ENSMUST00000119966 444 ntBASIC15.28■□□□□ 0.04
Limch1Q3UH68 Gm22331-201ENSMUST00000158066 136 ntBASIC15.28■□□□□ 0.04
Limch1Q3UH68 Mb-202ENSMUST00000166179 1056 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Limch1Q3UH68 Mb-203ENSMUST00000169226 1106 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Limch1Q3UH68 Gm5370-201ENSMUST00000187187 574 ntBASIC15.28■□□□□ 0.04
Limch1Q3UH68 Spata33-205ENSMUST00000212523 486 ntTSL 3 BASIC15.28■□□□□ 0.04
Limch1Q3UH68 Tomm7-201ENSMUST00000030851 1125 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Limch1Q3UH68 Tppp-201ENSMUST00000022057 5090 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Limch1Q3UH68 Ermard-203ENSMUST00000097393 2535 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
Limch1Q3UH68 Ptgr2-208ENSMUST00000147363 1869 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Limch1Q3UH68 Ddx19b-202ENSMUST00000065784 3104 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Limch1Q3UH68 Cap2-201ENSMUST00000021802 3713 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Limch1Q3UH68 Rnps1-201ENSMUST00000088512 1798 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Limch1Q3UH68 Evc2-201ENSMUST00000056365 4091 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Limch1Q3UH68 1300002E11Rik-202ENSMUST00000181780 1650 ntTSL 2 BASIC15.28■□□□□ 0.04
Limch1Q3UH68 Hectd2-208ENSMUST00000169036 3842 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Limch1Q3UH68 Eif4enif1-202ENSMUST00000110048 3712 ntTSL 5 BASIC15.28■□□□□ 0.04
Limch1Q3UH68 Gm4219-201ENSMUST00000168140 2143 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Limch1Q3UH68 4933435G04Rik-201ENSMUST00000205892 2108 ntBASIC15.28■□□□□ 0.04
Limch1Q3UH68 Acoxl-202ENSMUST00000110344 1573 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Limch1Q3UH68 A530020G20Rik-202ENSMUST00000181070 3660 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Limch1Q3UH68 Epha8-201ENSMUST00000030420 4713 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Limch1Q3UH68 Nrf1-209ENSMUST00000115209 2406 ntTSL 5 BASIC15.27■□□□□ 0.04
Limch1Q3UH68 Syt2-204ENSMUST00000188842 3386 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Limch1Q3UH68 Rcan2-202ENSMUST00000044895 3363 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Limch1Q3UH68 Tspan13-201ENSMUST00000020896 1932 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Limch1Q3UH68 Nrp2-204ENSMUST00000102822 6708 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Limch1Q3UH68 Dnaaf1-201ENSMUST00000093100 2821 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Limch1Q3UH68 Aacs-201ENSMUST00000031445 3239 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Limch1Q3UH68 Rgma-201ENSMUST00000094312 3586 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Limch1Q3UH68 Copb2-201ENSMUST00000035033 3050 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Limch1Q3UH68 Ccdc71-201ENSMUST00000061209 3092 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Limch1Q3UH68 Lrpprc-201ENSMUST00000112308 4393 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Limch1Q3UH68 Ywhab-201ENSMUST00000018470 3013 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Limch1Q3UH68 Gm10392-201ENSMUST00000100807 1732 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
Limch1Q3UH68 Dctn6-202ENSMUST00000117243 962 ntTSL 3 BASIC15.27■□□□□ 0.04
Limch1Q3UH68 Gm16229-201ENSMUST00000133270 1232 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Limch1Q3UH68 A330102I10Rik-202ENSMUST00000140415 682 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Limch1Q3UH68 Egfl7-208ENSMUST00000149789 683 ntTSL 3 BASIC15.27■□□□□ 0.04
Limch1Q3UH68 Mhrt-201ENSMUST00000181782 828 ntTSL 2 BASIC15.27■□□□□ 0.04
Limch1Q3UH68 Gm27514-201ENSMUST00000183692 110 ntBASIC15.27■□□□□ 0.04
Limch1Q3UH68 Gm27572-201ENSMUST00000183702 255 ntBASIC15.27■□□□□ 0.04
Limch1Q3UH68 Wfdc1-202ENSMUST00000212901 921 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Limch1Q3UH68 Itm2b-204ENSMUST00000228637 783 ntBASIC15.27■□□□□ 0.04
Limch1Q3UH68 Olfr707-201ENSMUST00000088687 924 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
Limch1Q3UH68 Olfr1532-ps1-201ENSMUST00000098140 924 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
Limch1Q3UH68 Chia1-201ENSMUST00000079132 1681 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Limch1Q3UH68 Rp2-202ENSMUST00000115387 4498 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Limch1Q3UH68 Gm11638-201ENSMUST00000153672 1615 ntTSL 2 BASIC15.27■□□□□ 0.03
Limch1Q3UH68 Oraov1-201ENSMUST00000033388 2015 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
Limch1Q3UH68 Mb21d1-201ENSMUST00000034898 3231 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Limch1Q3UH68 Ccdc22-201ENSMUST00000033483 2353 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Limch1Q3UH68 Asap1-218ENSMUST00000177374 4582 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
Limch1Q3UH68 Ska1-202ENSMUST00000177604 2605 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Limch1Q3UH68 Ebna1bp2-201ENSMUST00000030501 2960 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Limch1Q3UH68 Mlxip-201ENSMUST00000068237 7303 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Limch1Q3UH68 Trp53-202ENSMUST00000108657 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Limch1Q3UH68 Tex13c2-201ENSMUST00000197237 1834 ntAPPRIS P1 BASIC15.27■□□□□ 0.03
Limch1Q3UH68 Vax2os-201ENSMUST00000123402 1435 ntTSL 5 BASIC15.26■□□□□ 0.03
Limch1Q3UH68 Fnbp1-206ENSMUST00000113555 1776 ntTSL 5 BASIC15.26■□□□□ 0.03
Limch1Q3UH68 Nbeal2-210ENSMUST00000167320 8803 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Limch1Q3UH68 Sec23b-201ENSMUST00000028916 2779 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Limch1Q3UH68 Macrod2-204ENSMUST00000110062 3554 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Limch1Q3UH68 Arhgap10-202ENSMUST00000210519 2295 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Limch1Q3UH68 Armc7-201ENSMUST00000035240 2260 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Limch1Q3UH68 Gm16177-201ENSMUST00000120728 718 ntBASIC15.26■□□□□ 0.03
Limch1Q3UH68 Nudt17-202ENSMUST00000171249 1110 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Limch1Q3UH68 Cox6b2-204ENSMUST00000182173 391 ntTSL 2 BASIC15.26■□□□□ 0.03
Limch1Q3UH68 Gm36198-201ENSMUST00000217490 416 ntTSL 3 BASIC15.26■□□□□ 0.03
Limch1Q3UH68 Gm8598-201ENSMUST00000221184 836 ntBASIC15.26■□□□□ 0.03
Limch1Q3UH68 Net1-207ENSMUST00000223258 597 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Limch1Q3UH68 Cyct-201ENSMUST00000028430 655 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Limch1Q3UH68 Ceacam10-201ENSMUST00000038069 1048 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 64.7 ms