Protein–RNA interactions for Protein: P97386

Lig3, DNA ligase 3, mousemouse

Predictions only

Length 1,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig3P97386 Kcnk2-202ENSMUST00000110920 3572 ntAPPRIS ALT1 TSL 5 BASIC14.21□□□□□ -0.13
Lig3P97386 Eps8l1-214ENSMUST00000171445 2975 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
Lig3P97386 Paf1-201ENSMUST00000003529 2003 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Lig3P97386 2900026A02Rik-201ENSMUST00000050125 5876 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
Lig3P97386 Rhox2b-201ENSMUST00000115191 799 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Lig3P97386 Map7-202ENSMUST00000116259 3831 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Lig3P97386 Gm5678-201ENSMUST00000120115 939 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
Lig3P97386 Gm1335-201ENSMUST00000121653 386 ntBASIC14.21□□□□□ -0.13
Lig3P97386 Gm45692-201ENSMUST00000131138 557 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
Lig3P97386 Pelp1-202ENSMUST00000135148 562 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Lig3P97386 Gnb2-215ENSMUST00000170293 993 ntTSL 5 BASIC14.21□□□□□ -0.13
Lig3P97386 Gm24420-201ENSMUST00000176676 59 ntBASIC14.21□□□□□ -0.13
Lig3P97386 Mir7070-201ENSMUST00000183657 86 ntBASIC14.21□□□□□ -0.13
Lig3P97386 Cryaa-201ENSMUST00000019192 1176 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Lig3P97386 1600017P15Rik-202ENSMUST00000193960 890 ntBASIC14.21□□□□□ -0.13
Lig3P97386 Gm44632-201ENSMUST00000207245 474 ntTSL 2 BASIC14.21□□□□□ -0.13
Lig3P97386 Gm18027-201ENSMUST00000218947 619 ntBASIC14.21□□□□□ -0.13
Lig3P97386 AC153144.2-201ENSMUST00000221766 451 ntTSL 5 BASIC14.21□□□□□ -0.13
Lig3P97386 Cts7-204ENSMUST00000225321 1257 ntBASIC14.21□□□□□ -0.13
Lig3P97386 Mien1-201ENSMUST00000002655 747 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Lig3P97386 Dctn6-201ENSMUST00000033913 1249 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Lig3P97386 Mir433-201ENSMUST00000093564 124 ntBASIC14.21□□□□□ -0.13
Lig3P97386 Cnih4-204ENSMUST00000134115 3268 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Lig3P97386 Nfatc2-202ENSMUST00000074618 6637 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
Lig3P97386 Chrdl1-203ENSMUST00000112878 4050 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
Lig3P97386 Prn-201ENSMUST00000124100 2132 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
Lig3P97386 Fgfr3-215ENSMUST00000202138 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.14
Lig3P97386 Crtc1-201ENSMUST00000076615 5683 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Lig3P97386 Tubgcp3-201ENSMUST00000000776 3797 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Lig3P97386 Pus7-201ENSMUST00000119946 3407 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.14
Lig3P97386 Aldh3b1-201ENSMUST00000051803 1875 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Lig3P97386 Gm37015-201ENSMUST00000192763 1521 ntBASIC14.2□□□□□ -0.14
Lig3P97386 Hadhb-201ENSMUST00000026841 2033 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Lig3P97386 Kars-203ENSMUST00000164470 2189 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Lig3P97386 Pip5k1c-201ENSMUST00000045469 4323 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Lig3P97386 Cenpt-201ENSMUST00000040776 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Lig3P97386 Mtmr2-201ENSMUST00000034396 3788 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Lig3P97386 Chst4-202ENSMUST00000211894 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Lig3P97386 Fam160a2-201ENSMUST00000048079 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Lig3P97386 Dao-203ENSMUST00000161610 1633 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Lig3P97386 Ripor3-201ENSMUST00000099073 3580 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Lig3P97386 Alox12e-201ENSMUST00000019051 2422 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Lig3P97386 Zc3h7b-201ENSMUST00000109554 5958 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Lig3P97386 Eif3i-201ENSMUST00000102593 1123 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Lig3P97386 Gm16087-201ENSMUST00000124395 964 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Lig3P97386 Zfp629-204ENSMUST00000128731 823 ntTSL 3 BASIC14.2□□□□□ -0.14
Lig3P97386 Gm15948-201ENSMUST00000150616 403 ntTSL 3 BASIC14.2□□□□□ -0.14
Lig3P97386 Gm26728-201ENSMUST00000185268 595 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Lig3P97386 CT573034.1-201ENSMUST00000222983 313 ntBASIC14.2□□□□□ -0.14
Lig3P97386 Isoc2b-201ENSMUST00000064547 1080 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Lig3P97386 Gng8-201ENSMUST00000078182 910 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Lig3P97386 Kif1c-204ENSMUST00000137119 6596 ntAPPRIS P2 TSL 5 BASIC14.2□□□□□ -0.14
Lig3P97386 Lrpprc-201ENSMUST00000112308 4393 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Lig3P97386 Megf6-201ENSMUST00000030897 6851 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
Lig3P97386 Ablim2-201ENSMUST00000054598 3564 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Lig3P97386 Usp10-210ENSMUST00000144458 3726 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Lig3P97386 Ubxn10-203ENSMUST00000105811 2926 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Lig3P97386 Gcnt2-205ENSMUST00000225759 1366 ntAPPRIS ALT2 BASIC14.2□□□□□ -0.14
Lig3P97386 Kcnj3-203ENSMUST00000112633 1679 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Lig3P97386 4933435G04Rik-201ENSMUST00000205892 2108 ntBASIC14.2□□□□□ -0.14
Lig3P97386 Tmc6-201ENSMUST00000026659 2865 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Lig3P97386 Tmem136-201ENSMUST00000061833 3503 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Lig3P97386 Stx11-201ENSMUST00000042861 4173 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Lig3P97386 Gm7049-201ENSMUST00000223520 1712 ntBASIC14.19□□□□□ -0.14
Lig3P97386 Zfp57-201ENSMUST00000069250 1749 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
Lig3P97386 Spidr-201ENSMUST00000040248 3279 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Lig3P97386 Prr33-201ENSMUST00000054910 2251 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Lig3P97386 Nat8f1-201ENSMUST00000161198 1021 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Lig3P97386 Gm16315-201ENSMUST00000163009 783 ntTSL 3 BASIC14.19□□□□□ -0.14
Lig3P97386 Proscos-202ENSMUST00000178990 666 ntBASIC14.19□□□□□ -0.14
Lig3P97386 Gm38000-201ENSMUST00000192390 1215 ntBASIC14.19□□□□□ -0.14
Lig3P97386 Dnd1-ps-201ENSMUST00000196992 964 ntBASIC14.19□□□□□ -0.14
Lig3P97386 Gm44608-201ENSMUST00000206827 855 ntBASIC14.19□□□□□ -0.14
Lig3P97386 Sct-204ENSMUST00000211667 506 ntAPPRIS ALT2 TSL 2 BASIC14.19□□□□□ -0.14
Lig3P97386 Gm18935-201ENSMUST00000212692 664 ntBASIC14.19□□□□□ -0.14
Lig3P97386 Gm9368-201ENSMUST00000219348 831 ntBASIC14.19□□□□□ -0.14
Lig3P97386 Lsm7-208ENSMUST00000220225 1129 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Lig3P97386 AC155237.1-201ENSMUST00000226196 1279 ntBASIC14.19□□□□□ -0.14
Lig3P97386 Mea1-201ENSMUST00000002845 840 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Lig3P97386 Mrap-201ENSMUST00000038197 1001 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Lig3P97386 Fam214b-205ENSMUST00000107959 3060 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Lig3P97386 Csf1-202ENSMUST00000118593 3058 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Lig3P97386 Coro2b-201ENSMUST00000048043 3610 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Lig3P97386 Ccpg1-208ENSMUST00000150826 2939 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Lig3P97386 Ncan-201ENSMUST00000002412 7195 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Lig3P97386 Cux2-210ENSMUST00000168288 4697 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
Lig3P97386 Gm42706-201ENSMUST00000199733 1910 ntBASIC14.19□□□□□ -0.14
Lig3P97386 Wnt9b-201ENSMUST00000018630 4518 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Lig3P97386 Eno1b-201ENSMUST00000076155 1757 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Lig3P97386 Tmem63b-201ENSMUST00000113523 3284 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Lig3P97386 Prdm5-202ENSMUST00000031976 2155 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Lig3P97386 2610001J05Rik-203ENSMUST00000185219 1606 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
Lig3P97386 Haus8-202ENSMUST00000110071 1452 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
Lig3P97386 E230013L22Rik-201ENSMUST00000180408 1856 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Lig3P97386 AC238940.1-201ENSMUST00000225106 1858 ntBASIC14.18□□□□□ -0.14
Lig3P97386 Jaml-204ENSMUST00000215880 1704 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Lig3P97386 Gm9920-204ENSMUST00000148544 2752 ntTSL 2 BASIC14.18□□□□□ -0.14
Lig3P97386 Slc35c2-202ENSMUST00000109298 1991 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Lig3P97386 Sertad2-203ENSMUST00000109586 5515 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Lig3P97386 Rgs9bp-201ENSMUST00000069912 6590 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 32.1 ms