Protein–RNA interactions for Protein: P70354

Msx3, Homeobox protein MSX-3, mousemouse

Predictions only

Length 204 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx3P70354 Brd4-201ENSMUST00000003726 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Msx3P70354 Mir692-1-201ENSMUST00000102263 109 ntBASIC13.33□□□□□ -0.28
Msx3P70354 1700037H04Rik-202ENSMUST00000103188 1241 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
Msx3P70354 Cpsf4l-203ENSMUST00000106617 1123 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Msx3P70354 Arid2-202ENSMUST00000134985 809 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Msx3P70354 Rsf1os2-203ENSMUST00000155074 998 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Msx3P70354 Gm29152-201ENSMUST00000189284 325 ntTSL 5 BASIC13.33□□□□□ -0.28
Msx3P70354 Lsmem2-201ENSMUST00000191791 369 ntTSL 3 BASIC13.33□□□□□ -0.28
Msx3P70354 Ighv5-13-201ENSMUST00000193550 290 ntBASIC13.33□□□□□ -0.28
Msx3P70354 Atp5d-201ENSMUST00000003156 931 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Msx3P70354 Tspan8-201ENSMUST00000035563 1244 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Msx3P70354 Gm6180-201ENSMUST00000065243 498 ntBASIC13.33□□□□□ -0.28
Msx3P70354 H2afv-201ENSMUST00000093346 519 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Msx3P70354 Cyp2b10-201ENSMUST00000005477 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Msx3P70354 Gtf2ird1-212ENSMUST00000200944 3133 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Msx3P70354 Armcx1-206ENSMUST00000113201 2228 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
Msx3P70354 Syt1-202ENSMUST00000105276 4820 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Msx3P70354 Klhl26-205ENSMUST00000210250 2974 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Msx3P70354 Col22a1-202ENSMUST00000159993 8809 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
Msx3P70354 Cacna1b-203ENSMUST00000100348 7182 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
Msx3P70354 Proser3-202ENSMUST00000108165 2466 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Msx3P70354 Proser3-206ENSMUST00000215288 2465 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
Msx3P70354 Ormdl1-201ENSMUST00000027266 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Msx3P70354 Fam222b-201ENSMUST00000073705 3258 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Msx3P70354 Trpv1-201ENSMUST00000006106 2340 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
Msx3P70354 Dcun1d3-206ENSMUST00000207233 2917 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
Msx3P70354 Pef1-201ENSMUST00000030563 1551 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Msx3P70354 Rcan2-202ENSMUST00000044895 3363 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Msx3P70354 Dpp8-201ENSMUST00000034960 4808 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Msx3P70354 Gpatch4-203ENSMUST00000193398 2210 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Msx3P70354 4931429P17Rik-201ENSMUST00000061899 2012 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Msx3P70354 Slc36a1-202ENSMUST00000108867 1611 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Msx3P70354 Mavs-202ENSMUST00000110199 3057 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Msx3P70354 Cct4-204ENSMUST00000173867 2484 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Msx3P70354 Hoxb9-202ENSMUST00000174042 2269 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Msx3P70354 Atg7-207ENSMUST00000182428 2264 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
Msx3P70354 M6pr-202ENSMUST00000112610 2539 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
Msx3P70354 Bbs4-201ENSMUST00000026265 2518 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Msx3P70354 M6pr-201ENSMUST00000007602 2515 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Msx3P70354 Ccnc-204ENSMUST00000120679 1453 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Msx3P70354 Akirin1-ps-201ENSMUST00000119676 458 ntBASIC13.32□□□□□ -0.28
Msx3P70354 Gm12945-201ENSMUST00000140080 674 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Msx3P70354 Atp6v1f-203ENSMUST00000149646 806 ntTSL 5 BASIC13.32□□□□□ -0.28
Msx3P70354 Gm27230-202ENSMUST00000184671 857 ntTSL 3 BASIC13.32□□□□□ -0.28
Msx3P70354 Gm35549-203ENSMUST00000204619 644 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
Msx3P70354 AC153506.3-201ENSMUST00000219287 1029 ntTSL 5 BASIC13.32□□□□□ -0.28
Msx3P70354 Gm8598-201ENSMUST00000221184 836 ntBASIC13.32□□□□□ -0.28
Msx3P70354 AC154239.3-201ENSMUST00000226933 674 ntBASIC13.32□□□□□ -0.28
Msx3P70354 4921530L21Rik-202ENSMUST00000228913 1115 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
Msx3P70354 Cracr2a-201ENSMUST00000071563 1094 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Msx3P70354 Pcdhgb8-202ENSMUST00000208907 2796 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Msx3P70354 Npr1-201ENSMUST00000029540 4066 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Msx3P70354 Gm38385-201ENSMUST00000194454 2351 ntBASIC13.32□□□□□ -0.28
Msx3P70354 Ywhab-201ENSMUST00000018470 3013 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Msx3P70354 Plagl1-201ENSMUST00000121325 3946 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Msx3P70354 Rasa3-201ENSMUST00000117551 4404 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Msx3P70354 Met-202ENSMUST00000115442 4663 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
Msx3P70354 Npepps-219ENSMUST00000172108 2924 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
Msx3P70354 Azi2-201ENSMUST00000044454 3396 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Msx3P70354 Zfp954-201ENSMUST00000056246 2042 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Msx3P70354 Trpm4-209ENSMUST00000211743 3673 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Msx3P70354 Nek3-202ENSMUST00000110730 2050 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
Msx3P70354 Slc12a8-206ENSMUST00000122427 2070 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
Msx3P70354 Capn9-201ENSMUST00000093033 2330 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Msx3P70354 Acadsb-201ENSMUST00000015829 6081 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Msx3P70354 Sphk2-203ENSMUST00000210060 2577 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Msx3P70354 Fbxl5-211ENSMUST00000196483 2814 ntAPPRIS ALT1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Msx3P70354 Tpm3-rs7-201ENSMUST00000072359 2147 ntAPPRIS P1 BASIC13.31□□□□□ -0.28
Msx3P70354 9930014A18Rik-201ENSMUST00000180730 3074 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Msx3P70354 Cul9-201ENSMUST00000066026 7818 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
Msx3P70354 Gm5912-201ENSMUST00000122282 1438 ntBASIC13.31□□□□□ -0.28
Msx3P70354 Tufm-201ENSMUST00000098048 1679 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Msx3P70354 Klc2-202ENSMUST00000113727 2874 ntTSL 5 BASIC13.31□□□□□ -0.28
Msx3P70354 Syt2-204ENSMUST00000188842 3386 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Msx3P70354 A530020G20Rik-202ENSMUST00000181070 3660 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Msx3P70354 Mul1-202ENSMUST00000105813 3944 ntTSL 5 BASIC13.31□□□□□ -0.28
Msx3P70354 Gpr12-203ENSMUST00000197431 1455 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Msx3P70354 Tspan1-201ENSMUST00000030465 1985 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Msx3P70354 Zfp248-205ENSMUST00000161519 2243 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Msx3P70354 Zfp148-202ENSMUST00000165418 9431 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Msx3P70354 Madd-212ENSMUST00000111375 5706 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
Msx3P70354 Esr2-201ENSMUST00000076634 3288 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Msx3P70354 Nfix-203ENSMUST00000109762 2261 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Msx3P70354 Tufm-202ENSMUST00000106392 1754 ntTSL 2 BASIC13.31□□□□□ -0.28
Msx3P70354 Fbxw17-201ENSMUST00000046974 1798 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Msx3P70354 Gm12291-201ENSMUST00000121627 311 ntBASIC13.31□□□□□ -0.28
Msx3P70354 Gm20521-201ENSMUST00000134077 1245 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
Msx3P70354 Gm13850-201ENSMUST00000140465 623 ntTSL 3 BASIC13.31□□□□□ -0.28
Msx3P70354 Gm23984-201ENSMUST00000157139 203 ntBASIC13.31□□□□□ -0.28
Msx3P70354 Gtpbp10-211ENSMUST00000198799 648 ntBASIC13.31□□□□□ -0.28
Msx3P70354 Slc10a7-204ENSMUST00000209992 939 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Msx3P70354 Gm45564-201ENSMUST00000210460 530 ntTSL 5 BASIC13.31□□□□□ -0.28
Msx3P70354 Kitl-204ENSMUST00000218200 564 ntTSL 5 BASIC13.31□□□□□ -0.28
Msx3P70354 Elane-201ENSMUST00000046091 984 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Msx3P70354 Zscan20-202ENSMUST00000097877 5364 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Msx3P70354 AC125108.1-201ENSMUST00000218986 2330 ntBASIC13.31□□□□□ -0.28
Msx3P70354 AL645783.1-201ENSMUST00000221416 1832 ntBASIC13.31□□□□□ -0.28
Msx3P70354 Dmac2-202ENSMUST00000085953 2387 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
Msx3P70354 Zmiz1os1-201ENSMUST00000156682 3469 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Msx3P70354 Igsf23-204ENSMUST00000208974 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Retrieved 100 of 76,532 protein–RNA pairs in 39.9 ms