Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Shroom1-201ENSMUST00000018531 2630 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
Traf1P39428 Pik3cd-204ENSMUST00000105690 4921 ntAPPRIS P4 TSL 1 (best) BASIC15.02■□□□□ -0
Traf1P39428 Arhgap11a-203ENSMUST00000110948 4878 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
Traf1P39428 Rap1gap2-202ENSMUST00000102521 6565 ntAPPRIS P1 TSL 5 BASIC15.02■□□□□ -0
Traf1P39428 Kcnq2-208ENSMUST00000103051 4200 ntAPPRIS ALT2 TSL 5 BASIC15.02■□□□□ -0
Traf1P39428 Minos1-203ENSMUST00000143971 2549 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Traf1P39428 Sall3-201ENSMUST00000057950 6886 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Traf1P39428 Ubap2l-204ENSMUST00000195995 3516 ntTSL 1 (best) BASIC15.02■□□□□ -0
Traf1P39428 Aff2-201ENSMUST00000033532 4523 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Traf1P39428 Klhl26-203ENSMUST00000209415 2919 ntTSL 1 (best) BASIC15.02■□□□□ -0
Traf1P39428 Toe1-202ENSMUST00000106455 1209 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
Traf1P39428 Qdpr-203ENSMUST00000118097 1232 ntTSL 5 BASIC15.02■□□□□ -0
Traf1P39428 Gm6023-201ENSMUST00000118217 606 ntBASIC15.02■□□□□ -0
Traf1P39428 Nr2f1-203ENSMUST00000127137 991 ntTSL 5 BASIC15.02■□□□□ -0
Traf1P39428 Gm16124-201ENSMUST00000146938 516 ntTSL 2 BASIC15.02■□□□□ -0
Traf1P39428 Gm12315-201ENSMUST00000151599 911 ntTSL 3 BASIC15.02■□□□□ -0
Traf1P39428 Gm17208-201ENSMUST00000168388 535 ntBASIC15.02■□□□□ -0
Traf1P39428 Gm44364-201ENSMUST00000198368 141 ntBASIC15.02■□□□□ -0
Traf1P39428 Ighv8-10-201ENSMUST00000199579 358 ntBASIC15.02■□□□□ -0
Traf1P39428 Rfxank-203ENSMUST00000212320 1121 ntTSL 1 (best) BASIC15.02■□□□□ -0
Traf1P39428 Gm9368-201ENSMUST00000219348 831 ntBASIC15.02■□□□□ -0
Traf1P39428 Gm5781-201ENSMUST00000219792 443 ntBASIC15.02■□□□□ -0
Traf1P39428 Stk33-204ENSMUST00000121748 2295 ntAPPRIS P1 TSL 5 BASIC15.02□□□□□ -0.01
Traf1P39428 Nfatc4-201ENSMUST00000024179 3267 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
Traf1P39428 Slc8a2-201ENSMUST00000168693 4171 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
Traf1P39428 Ptprr-204ENSMUST00000128399 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
Traf1P39428 Gm4219-201ENSMUST00000168140 2143 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
Traf1P39428 Miat-205ENSMUST00000182953 9163 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
Traf1P39428 Otx2-209ENSMUST00000226501 2592 ntAPPRIS P1 BASIC15.02□□□□□ -0.01
Traf1P39428 Nipa2-204ENSMUST00000119201 3925 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Traf1P39428 Olfr763-201ENSMUST00000077460 2523 ntAPPRIS P1 BASIC15.02□□□□□ -0.01
Traf1P39428 Cox10-201ENSMUST00000049091 2915 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Traf1P39428 Pdpk1-204ENSMUST00000115409 4623 ntTSL 5 BASIC15.01□□□□□ -0.01
Traf1P39428 Mlxip-201ENSMUST00000068237 7303 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Traf1P39428 Gpd2-207ENSMUST00000169687 5745 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Traf1P39428 Gm26525-201ENSMUST00000180666 3616 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Traf1P39428 Gm26867-201ENSMUST00000180963 3615 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Traf1P39428 Armcx1-205ENSMUST00000113199 2413 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Traf1P39428 Myl6-202ENSMUST00000217733 1668 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Traf1P39428 Myo18a-221ENSMUST00000167856 6132 ntTSL 5 BASIC15.01□□□□□ -0.01
Traf1P39428 Gm12241-201ENSMUST00000118330 726 ntBASIC15.01□□□□□ -0.01
Traf1P39428 Tmem219-203ENSMUST00000120007 1087 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Traf1P39428 Gm12363-201ENSMUST00000122250 668 ntBASIC15.01□□□□□ -0.01
Traf1P39428 Gm13786-201ENSMUST00000122371 333 ntBASIC15.01□□□□□ -0.01
Traf1P39428 Gm12347-201ENSMUST00000127883 470 ntTSL 3 BASIC15.01□□□□□ -0.01
Traf1P39428 Eif4e1b-204ENSMUST00000132005 706 ntTSL 2 BASIC15.01□□□□□ -0.01
Traf1P39428 Gm14209-201ENSMUST00000154946 462 ntTSL 5 BASIC15.01□□□□□ -0.01
Traf1P39428 Cabp2-201ENSMUST00000159148 1030 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Traf1P39428 2010320O07Rik-201ENSMUST00000160935 525 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Traf1P39428 Gm6222-202ENSMUST00000182143 629 ntBASIC15.01□□□□□ -0.01
Traf1P39428 Mb-201ENSMUST00000019037 966 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
Traf1P39428 Gm19931-201ENSMUST00000198920 368 ntBASIC15.01□□□□□ -0.01
Traf1P39428 Gm43822-201ENSMUST00000200285 476 ntBASIC15.01□□□□□ -0.01
Traf1P39428 Olfr284-202ENSMUST00000206647 966 ntBASIC15.01□□□□□ -0.01
Traf1P39428 Exoc6b-203ENSMUST00000160197 5439 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Traf1P39428 Llgl2-212ENSMUST00000177736 3612 ntAPPRIS ALT2 TSL 2 BASIC15.01□□□□□ -0.01
Traf1P39428 Zap70-201ENSMUST00000027291 2245 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Traf1P39428 Zfp853-202ENSMUST00000212355 2871 ntAPPRIS P5 TSL 5 BASIC15.01□□□□□ -0.01
Traf1P39428 Atp2a3-204ENSMUST00000108486 4540 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
Traf1P39428 Fgd6-201ENSMUST00000020208 8044 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Traf1P39428 Spred3-201ENSMUST00000048923 4056 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Traf1P39428 Nkain3-201ENSMUST00000102998 3098 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Traf1P39428 Cbs-203ENSMUST00000118504 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Traf1P39428 Aamp-202ENSMUST00000178235 1756 ntAPPRIS ALT1 TSL 5 BASIC15.01□□□□□ -0.01
Traf1P39428 Usp18-201ENSMUST00000032198 1771 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Traf1P39428 Ralgps2-214ENSMUST00000191605 2958 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
Traf1P39428 Ptpn6-201ENSMUST00000004377 2308 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
Traf1P39428 Zfand4-202ENSMUST00000112900 3220 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
Traf1P39428 Triml2-203ENSMUST00000209872 1395 ntTSL 1 (best) BASIC15□□□□□ -0.01
Traf1P39428 H2-T22-202ENSMUST00000077960 1694 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
Traf1P39428 Trim2-203ENSMUST00000107691 7428 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Traf1P39428 Gpr157-201ENSMUST00000094451 4900 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Traf1P39428 Foxj2-202ENSMUST00000177927 4620 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
Traf1P39428 Brms1-201ENSMUST00000116567 1338 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Traf1P39428 Gm10097-201ENSMUST00000180100 2784 ntAPPRIS P1 BASIC15□□□□□ -0.01
Traf1P39428 Ablim2-201ENSMUST00000054598 3564 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
Traf1P39428 Bcl2l1-201ENSMUST00000007803 2417 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Traf1P39428 Gm14723-201ENSMUST00000118686 215 ntBASIC15□□□□□ -0.01
Traf1P39428 Rab11fip4os2-201ENSMUST00000123067 689 ntTSL 1 (best) BASIC15□□□□□ -0.01
Traf1P39428 Dnase2a-206ENSMUST00000145292 678 ntTSL 5 BASIC15□□□□□ -0.01
Traf1P39428 Gm7809-201ENSMUST00000153199 742 ntBASIC15□□□□□ -0.01
Traf1P39428 Armc2-208ENSMUST00000162405 1135 ntTSL 1 (best) BASIC15□□□□□ -0.01
Traf1P39428 Gm5896-201ENSMUST00000189662 1024 ntBASIC15□□□□□ -0.01
Traf1P39428 Gm45242-201ENSMUST00000210666 2129 ntBASIC15□□□□□ -0.01
Traf1P39428 AC162938.2-203ENSMUST00000216604 1134 ntTSL 5 BASIC15□□□□□ -0.01
Traf1P39428 Olfr1368-201ENSMUST00000055298 1064 ntAPPRIS P1 BASIC15□□□□□ -0.01
Traf1P39428 4930442H23Rik-201ENSMUST00000056086 1245 ntAPPRIS P1 BASIC15□□□□□ -0.01
Traf1P39428 Luc7l3-209ENSMUST00000166312 5244 ntTSL 1 (best) BASIC15□□□□□ -0.01
Traf1P39428 Fam160a2-204ENSMUST00000122327 3521 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
Traf1P39428 Eif4e2-206ENSMUST00000113233 1807 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Traf1P39428 Prx-203ENSMUST00000108355 5433 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Traf1P39428 Bap1-201ENSMUST00000022458 3460 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Traf1P39428 Abtb2-201ENSMUST00000076212 4558 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Traf1P39428 Abcg4-208ENSMUST00000161354 3999 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Traf1P39428 Gm853-201ENSMUST00000023884 2314 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Traf1P39428 Calr3-201ENSMUST00000019876 1769 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Traf1P39428 Taf2-201ENSMUST00000041733 5031 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Traf1P39428 Sema6c-201ENSMUST00000090821 3933 ntAPPRIS P3 TSL 5 BASIC15□□□□□ -0.01
Traf1P39428 Fam43a-201ENSMUST00000059078 3075 ntAPPRIS P1 BASIC15□□□□□ -0.01
Traf1P39428 Gnaz-202ENSMUST00000159991 3331 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Retrieved 100 of 76,532 protein–RNA pairs in 35.7 ms