Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Gm16853-201ENSMUST00000181812 1986 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
RaraP11416 Pex2-204ENSMUST00000165309 2038 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
RaraP11416 Gprc5a-201ENSMUST00000050104 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RaraP11416 Gm45266-201ENSMUST00000210111 2173 ntBASIC14.03□□□□□ -0.16
RaraP11416 Gcdh-201ENSMUST00000003907 2167 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
RaraP11416 Armcx1-206ENSMUST00000113201 2228 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
RaraP11416 Secisbp2l-201ENSMUST00000053699 6797 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RaraP11416 Cnn1-201ENSMUST00000001384 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RaraP11416 Arhgap25-202ENSMUST00000101197 2493 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
RaraP11416 Ivns1abp-201ENSMUST00000023918 3511 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RaraP11416 Sun2-202ENSMUST00000089311 3709 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
RaraP11416 Rnf40-202ENSMUST00000205694 5279 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RaraP11416 Epb41l5-208ENSMUST00000191046 6870 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RaraP11416 Ncor2-206ENSMUST00000111402 8862 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
RaraP11416 Tbx3-203ENSMUST00000121021 4777 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
RaraP11416 5830411N06Rik-202ENSMUST00000093984 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
RaraP11416 Ackr2-201ENSMUST00000050327 2853 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
RaraP11416 Dgkg-201ENSMUST00000023578 2725 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
RaraP11416 Dsp-202ENSMUST00000127906 7761 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
RaraP11416 Slc30a3-206ENSMUST00000202740 1989 ntTSL 5 BASIC14.02□□□□□ -0.16
RaraP11416 Pitpnm2-204ENSMUST00000159677 1690 ntTSL 5 BASIC14.02□□□□□ -0.16
RaraP11416 Arvcf-201ENSMUST00000090103 4620 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
RaraP11416 Vps4b-202ENSMUST00000112736 4539 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
RaraP11416 Nrsn2-201ENSMUST00000079278 1455 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
RaraP11416 Nrp2-204ENSMUST00000102822 6708 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
RaraP11416 Gm14104-201ENSMUST00000135990 356 ntTSL 5 BASIC14.02□□□□□ -0.17
RaraP11416 4933427I22Rik-201ENSMUST00000138672 393 ntTSL 3 BASIC14.02□□□□□ -0.17
RaraP11416 Gm11574-201ENSMUST00000139752 946 ntTSL 5 BASIC14.02□□□□□ -0.17
RaraP11416 Gm14493-201ENSMUST00000141174 543 ntTSL 5 BASIC14.02□□□□□ -0.17
RaraP11416 Gm15945-201ENSMUST00000146755 810 ntTSL 3 BASIC14.02□□□□□ -0.17
RaraP11416 Gm15429-201ENSMUST00000151268 798 ntBASIC14.02□□□□□ -0.17
RaraP11416 Mir6392-201ENSMUST00000184924 108 ntBASIC14.02□□□□□ -0.17
RaraP11416 Lsmem2-201ENSMUST00000191791 369 ntTSL 3 BASIC14.02□□□□□ -0.17
RaraP11416 2610300A13Rik-201ENSMUST00000192930 503 ntBASIC14.02□□□□□ -0.17
RaraP11416 Gm38297-201ENSMUST00000195122 1057 ntBASIC14.02□□□□□ -0.17
RaraP11416 Gm44069-201ENSMUST00000204898 506 ntBASIC14.02□□□□□ -0.17
RaraP11416 Gm18624-201ENSMUST00000220966 658 ntBASIC14.02□□□□□ -0.17
RaraP11416 Bphl-201ENSMUST00000040656 1253 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
RaraP11416 Mpc1-201ENSMUST00000046754 920 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
RaraP11416 Upk3bl-201ENSMUST00000006303 1045 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
RaraP11416 Ttr-201ENSMUST00000075312 1219 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
RaraP11416 Elk1-201ENSMUST00000009550 3548 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
RaraP11416 Zmym1-202ENSMUST00000106099 2982 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
RaraP11416 Rabif-201ENSMUST00000047978 2861 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
RaraP11416 Rgs9bp-201ENSMUST00000069912 6590 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
RaraP11416 Gm14123-201ENSMUST00000156345 2658 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
RaraP11416 Klk2-ps-202ENSMUST00000206865 2684 ntTSL 5 BASIC14.02□□□□□ -0.17
RaraP11416 Tcf4-250ENSMUST00000202458 2610 ntTSL 5 BASIC14.02□□□□□ -0.17
RaraP11416 Fchsd1-201ENSMUST00000043437 4270 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
RaraP11416 Tfb2m-201ENSMUST00000027769 2449 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
RaraP11416 Sectm1b-201ENSMUST00000039309 2287 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
RaraP11416 Abhd6-202ENSMUST00000166497 2226 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
RaraP11416 Nudt21-201ENSMUST00000034204 5010 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
RaraP11416 4933435G04Rik-201ENSMUST00000205892 2108 ntBASIC14.02□□□□□ -0.17
RaraP11416 Rab31-201ENSMUST00000070673 3476 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
RaraP11416 Pcdhgc3-201ENSMUST00000076807 4687 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
RaraP11416 Incenp-201ENSMUST00000025562 3217 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
RaraP11416 Ehbp1l1-201ENSMUST00000049295 6404 ntAPPRIS P4 TSL 1 (best) BASIC14.01□□□□□ -0.17
RaraP11416 Sall4-201ENSMUST00000029061 5073 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RaraP11416 Tmc8-204ENSMUST00000119455 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
RaraP11416 Riok1-201ENSMUST00000021866 2738 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RaraP11416 Pex2-206ENSMUST00000195855 1587 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RaraP11416 Rita1-201ENSMUST00000031599 1573 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RaraP11416 Dll1-201ENSMUST00000014917 3581 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RaraP11416 Tmem104-202ENSMUST00000100235 4561 ntAPPRIS ALT1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RaraP11416 Plaur-201ENSMUST00000002284 1506 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RaraP11416 Tmem104-201ENSMUST00000061450 4564 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
RaraP11416 Luc7l2-207ENSMUST00000161227 2405 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
RaraP11416 Cog7-203ENSMUST00000205438 3355 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
RaraP11416 Ilvbl-212ENSMUST00000220430 2350 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
RaraP11416 Fmo1-201ENSMUST00000046049 2388 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RaraP11416 Rnf214-205ENSMUST00000160699 2287 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
RaraP11416 Cplx1-201ENSMUST00000046892 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RaraP11416 Pgghg-204ENSMUST00000164580 3001 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
RaraP11416 Gfpt1-202ENSMUST00000113655 1255 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
RaraP11416 Gm13850-201ENSMUST00000140465 623 ntTSL 3 BASIC14.01□□□□□ -0.17
RaraP11416 Zfp414-204ENSMUST00000166627 1211 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
RaraP11416 Gm18558-201ENSMUST00000186253 1214 ntBASIC14.01□□□□□ -0.17
RaraP11416 Prr29-204ENSMUST00000188561 592 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
RaraP11416 Prr29-206ENSMUST00000190795 822 ntTSL 5 BASIC14.01□□□□□ -0.17
RaraP11416 H2-Bl-209ENSMUST00000194244 862 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
RaraP11416 Gm5276-201ENSMUST00000196683 1047 ntBASIC14.01□□□□□ -0.17
RaraP11416 Gstt2-203ENSMUST00000218500 794 ntTSL 5 BASIC14.01□□□□□ -0.17
RaraP11416 Gm7446-201ENSMUST00000221035 1240 ntBASIC14.01□□□□□ -0.17
RaraP11416 AC154687.2-201ENSMUST00000223853 640 ntBASIC14.01□□□□□ -0.17
RaraP11416 Zfp414-201ENSMUST00000073570 1197 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
RaraP11416 Dhtkd1-202ENSMUST00000095147 5480 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
RaraP11416 Gm44758-201ENSMUST00000206096 2068 ntBASIC14.01□□□□□ -0.17
RaraP11416 Gm44942-201ENSMUST00000096093 2072 ntBASIC14.01□□□□□ -0.17
RaraP11416 Cand1-201ENSMUST00000020315 7766 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RaraP11416 Il4ra-201ENSMUST00000033004 5256 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RaraP11416 Zbtb7b-202ENSMUST00000107432 3639 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RaraP11416 Syvn1-204ENSMUST00000138532 3464 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
RaraP11416 Phactr2-201ENSMUST00000079698 1934 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
RaraP11416 Sufu-204ENSMUST00000120778 1850 ntTSL 2 BASIC14.01□□□□□ -0.17
RaraP11416 Syt1-202ENSMUST00000105276 4820 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RaraP11416 AL732309.2-201ENSMUST00000228052 3210 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
RaraP11416 Gm44292-201ENSMUST00000205194 2364 ntBASIC14.01□□□□□ -0.17
RaraP11416 Usp53-202ENSMUST00000197314 3586 ntTSL 5 BASIC14.01□□□□□ -0.17
RaraP11416 Pcdhgb1-201ENSMUST00000192931 4723 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 62.1 ms