Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Stard5-202ENSMUST00000117410 2832 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Lire1P11260 Gm26616-202ENSMUST00000195676 3107 ntBASIC12.37□□□□□ -0.43
Lire1P11260 Smg8-201ENSMUST00000020801 3218 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Lire1P11260 Gm12341-201ENSMUST00000119724 503 ntBASIC12.37□□□□□ -0.43
Lire1P11260 Rpsa-ps9-201ENSMUST00000120702 885 ntBASIC12.37□□□□□ -0.43
Lire1P11260 Apoc3-203ENSMUST00000121916 709 ntTSL 2 BASIC12.37□□□□□ -0.43
Lire1P11260 Cpne8-201ENSMUST00000014777 697 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Lire1P11260 Gm17634-201ENSMUST00000181383 1285 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Lire1P11260 Mir7654-201ENSMUST00000185082 70 ntBASIC12.37□□□□□ -0.43
Lire1P11260 Hist1h3h-201ENSMUST00000188775 411 ntAPPRIS P1 BASIC12.37□□□□□ -0.43
Lire1P11260 Hist1h3i-201ENSMUST00000189457 411 ntAPPRIS P1 BASIC12.37□□□□□ -0.43
Lire1P11260 Gm7558-201ENSMUST00000193221 1165 ntBASIC12.37□□□□□ -0.43
Lire1P11260 AC155252.1-201ENSMUST00000226462 1208 ntBASIC12.37□□□□□ -0.43
Lire1P11260 Kcnk9-201ENSMUST00000044624 1209 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Lire1P11260 Zic4-209ENSMUST00000173933 1764 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
Lire1P11260 Tbc1d10c-201ENSMUST00000045864 1758 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Lire1P11260 E230013L22Rik-201ENSMUST00000180408 1856 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Lire1P11260 Tcf4-253ENSMUST00000202610 1959 ntTSL 5 BASIC12.37□□□□□ -0.43
Lire1P11260 Alms1-ps1-201ENSMUST00000159498 2166 ntBASIC12.37□□□□□ -0.43
Lire1P11260 Kifc1-204ENSMUST00000173492 2350 ntAPPRIS P2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Lire1P11260 Mrpl58-209ENSMUST00000153983 2596 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Lire1P11260 Sema7a-201ENSMUST00000043059 3297 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Lire1P11260 Kremen1-201ENSMUST00000020662 4856 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Lire1P11260 Tbc1d1-202ENSMUST00000101195 5432 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.43
Lire1P11260 Sun2-202ENSMUST00000089311 3709 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.43
Lire1P11260 Slc39a8-202ENSMUST00000081978 3314 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Lire1P11260 Gm7104-201ENSMUST00000179741 2532 ntBASIC12.37□□□□□ -0.43
Lire1P11260 Asb8-204ENSMUST00000143400 2226 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Lire1P11260 Mrps9-201ENSMUST00000057208 1418 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Lire1P11260 Xpnpep1-209ENSMUST00000183108 4078 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Lire1P11260 Kif26b-201ENSMUST00000160789 6216 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Lire1P11260 Calcoco1-204ENSMUST00000171838 2968 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Lire1P11260 Per1-206ENSMUST00000166748 4636 ntAPPRIS P2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Lire1P11260 Gm16010-202ENSMUST00000145410 4427 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Lire1P11260 Pcdhga11-201ENSMUST00000061279 4756 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Lire1P11260 Hdac5-201ENSMUST00000008999 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Lire1P11260 Vit-201ENSMUST00000024880 2720 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Lire1P11260 Coro6-205ENSMUST00000108391 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Lire1P11260 Fig4-201ENSMUST00000043814 3282 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Lire1P11260 Tppp3-203ENSMUST00000177126 1396 ntAPPRIS P1 TSL 3 BASIC12.36□□□□□ -0.43
Lire1P11260 Nxf1-202ENSMUST00000010248 748 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Lire1P11260 Gfpt1-203ENSMUST00000113657 1200 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Lire1P11260 Unc50-202ENSMUST00000114925 1094 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Lire1P11260 Gm15957-201ENSMUST00000118893 974 ntBASIC12.36□□□□□ -0.43
Lire1P11260 Mrpl40-202ENSMUST00000119273 778 ntTSL 3 BASIC12.36□□□□□ -0.43
Lire1P11260 Pax5-206ENSMUST00000134968 969 ntTSL 5 BASIC12.36□□□□□ -0.43
Lire1P11260 Stk19-ps1-201ENSMUST00000174597 517 ntBASIC12.36□□□□□ -0.43
Lire1P11260 Rab10os-207ENSMUST00000179924 823 ntTSL 5 BASIC12.36□□□□□ -0.43
Lire1P11260 Gm43691-201ENSMUST00000196625 697 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Lire1P11260 Gm42921-201ENSMUST00000196670 655 ntTSL 2 BASIC12.36□□□□□ -0.43
Lire1P11260 Gm5279-201ENSMUST00000199575 745 ntBASIC12.36□□□□□ -0.43
Lire1P11260 Gm43630-201ENSMUST00000201550 776 ntBASIC12.36□□□□□ -0.43
Lire1P11260 A730061H03Rik-201ENSMUST00000066106 465 ntAPPRIS P1 BASIC12.36□□□□□ -0.43
Lire1P11260 Coro2b-201ENSMUST00000048043 3610 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Lire1P11260 Colgalt1-201ENSMUST00000047903 3207 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Lire1P11260 Chpf2-201ENSMUST00000088295 5371 ntAPPRIS P1 TSL 2 BASIC12.36□□□□□ -0.43
Lire1P11260 Prrc2b-202ENSMUST00000069817 10671 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Lire1P11260 Dcaf11-204ENSMUST00000121622 2379 ntAPPRIS P2 TSL 5 BASIC12.36□□□□□ -0.43
Lire1P11260 1700001L05Rik-201ENSMUST00000100370 2270 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Lire1P11260 Mettl27-201ENSMUST00000047196 2808 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Lire1P11260 Gm44745-201ENSMUST00000206563 2723 ntBASIC12.36□□□□□ -0.43
Lire1P11260 Unc45a-201ENSMUST00000032748 3260 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Lire1P11260 Gfap-201ENSMUST00000067444 2648 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Lire1P11260 Kifc5b-201ENSMUST00000078961 2627 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
Lire1P11260 Gm29374-201ENSMUST00000187198 1340 ntTSL 3 BASIC12.36□□□□□ -0.43
Lire1P11260 Tram1l1-201ENSMUST00000058994 3889 ntAPPRIS P1 BASIC12.36□□□□□ -0.43
Lire1P11260 Pias3-203ENSMUST00000107077 2695 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Lire1P11260 Myh6-205ENSMUST00000226297 6008 ntAPPRIS P1 BASIC12.35□□□□□ -0.43
Lire1P11260 Psrc1-202ENSMUST00000102629 1687 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Lire1P11260 A3galt2-202ENSMUST00000106077 2114 ntAPPRIS ALT2 TSL 5 BASIC12.35□□□□□ -0.43
Lire1P11260 Tsku-205ENSMUST00000167405 2597 ntAPPRIS P1 TSL 5 BASIC12.35□□□□□ -0.43
Lire1P11260 Paf1-201ENSMUST00000003529 2003 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Lire1P11260 AC115735.4-201ENSMUST00000227460 1944 ntBASIC12.35□□□□□ -0.43
Lire1P11260 Bdh1-202ENSMUST00000115226 1496 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Lire1P11260 Rph3al-204ENSMUST00000121287 2199 ntAPPRIS P1 TSL 5 BASIC12.35□□□□□ -0.43
Lire1P11260 Gnb4-201ENSMUST00000108234 2510 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Lire1P11260 Olfr239-202ENSMUST00000213731 3690 ntTSL 5 BASIC12.35□□□□□ -0.43
Lire1P11260 Gpt-201ENSMUST00000023203 1749 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Lire1P11260 Capn2-201ENSMUST00000068505 3225 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Lire1P11260 Bmp4-201ENSMUST00000074077 2064 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Lire1P11260 Syvn1-201ENSMUST00000025723 2780 ntAPPRIS ALT2 TSL 5 BASIC12.35□□□□□ -0.43
Lire1P11260 Gm15440-201ENSMUST00000110042 1231 ntAPPRIS P1 TSL 5 BASIC12.35□□□□□ -0.43
Lire1P11260 Nmi-202ENSMUST00000112705 1130 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Lire1P11260 Gm4984-201ENSMUST00000115987 360 ntBASIC12.35□□□□□ -0.43
Lire1P11260 Mrps24-205ENSMUST00000154330 995 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Lire1P11260 Mtmr2-209ENSMUST00000156801 617 ntTSL 5 BASIC12.35□□□□□ -0.43
Lire1P11260 Olfr455-201ENSMUST00000171307 954 ntAPPRIS P1 BASIC12.35□□□□□ -0.43
Lire1P11260 Gm6283-201ENSMUST00000182369 1000 ntBASIC12.35□□□□□ -0.43
Lire1P11260 Spag7-201ENSMUST00000018431 1159 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Lire1P11260 Gm27892-201ENSMUST00000185017 106 ntBASIC12.35□□□□□ -0.43
Lire1P11260 Nabp1-202ENSMUST00000185534 708 ntTSL 2 BASIC12.35□□□□□ -0.43
Lire1P11260 1700094J05Rik-202ENSMUST00000190491 997 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Lire1P11260 AC150560.1-201ENSMUST00000227731 1187 ntBASIC12.35□□□□□ -0.43
Lire1P11260 Batf3-201ENSMUST00000027943 801 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Lire1P11260 Gstm1-201ENSMUST00000004140 1289 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Lire1P11260 Map3k11-201ENSMUST00000004156 3801 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Lire1P11260 Arrdc5-201ENSMUST00000097303 1054 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Lire1P11260 Rfx6-204ENSMUST00000219364 2682 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Lire1P11260 Matn2-203ENSMUST00000226766 3252 ntBASIC12.35□□□□□ -0.43
Lire1P11260 Samd11-204ENSMUST00000218788 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Retrieved 100 of 76,532 protein–RNA pairs in 60.9 ms