Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Sh3bp5l-202ENSMUST00000116376 3016 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Hmgb3O54879 Gm45253-201ENSMUST00000210694 2076 ntTSL 5 BASIC10.72□□□□□ -0.69
Hmgb3O54879 Faap100-201ENSMUST00000026448 3193 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Hmgb3O54879 Psg23-201ENSMUST00000057810 2179 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Hmgb3O54879 Lrp2-203ENSMUST00000100051 4359 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
Hmgb3O54879 Tex22-202ENSMUST00000109729 735 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Hmgb3O54879 Gm16151-201ENSMUST00000129696 639 ntTSL 3 BASIC10.72□□□□□ -0.69
Hmgb3O54879 2200002J24Rik-201ENSMUST00000013227 333 ntAPPRIS P1 TSL 3 BASIC10.72□□□□□ -0.69
Hmgb3O54879 Snhg17-201ENSMUST00000133449 933 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
Hmgb3O54879 Tgfb1i1-203ENSMUST00000163609 1053 ntTSL 5 BASIC10.72□□□□□ -0.69
Hmgb3O54879 1190007I07Rik-202ENSMUST00000176200 586 ntAPPRIS P1 TSL 2 BASIC10.72□□□□□ -0.69
Hmgb3O54879 Tdrkh-208ENSMUST00000200486 1231 ntTSL 3 BASIC10.72□□□□□ -0.69
Hmgb3O54879 Pfn3-201ENSMUST00000054146 545 ntAPPRIS P1 BASIC10.72□□□□□ -0.69
Hmgb3O54879 Rnaseh2a-201ENSMUST00000065049 1006 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
Hmgb3O54879 Aym1-201ENSMUST00000066573 528 ntAPPRIS P1 BASIC10.72□□□□□ -0.69
Hmgb3O54879 Rere-202ENSMUST00000105682 7728 ntAPPRIS P2 TSL 5 BASIC10.72□□□□□ -0.69
Hmgb3O54879 Tcp10b-202ENSMUST00000116666 2588 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Hmgb3O54879 Tmem37-201ENSMUST00000056089 1311 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Hmgb3O54879 AC131586.3-201ENSMUST00000228355 1367 ntBASIC10.72□□□□□ -0.69
Hmgb3O54879 Gm6871-201ENSMUST00000073410 1430 ntAPPRIS ALT2 TSL 5 BASIC10.72□□□□□ -0.69
Hmgb3O54879 Zmym1-202ENSMUST00000106099 2982 ntAPPRIS ALT2 TSL 1 (best) BASIC10.72□□□□□ -0.69
Hmgb3O54879 Pla2g6-201ENSMUST00000047816 2963 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
Hmgb3O54879 Sel1l-210ENSMUST00000178462 6150 ntTSL 5 BASIC10.72□□□□□ -0.69
Hmgb3O54879 Slc29a1-209ENSMUST00000166119 1598 ntAPPRIS ALT2 TSL 5 BASIC10.72□□□□□ -0.69
Hmgb3O54879 Trappc2-203ENSMUST00000116495 1613 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Hmgb3O54879 Gm9279-201ENSMUST00000223175 1606 ntBASIC10.72□□□□□ -0.69
Hmgb3O54879 Fscn2-201ENSMUST00000026445 1713 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Hmgb3O54879 Mpi-201ENSMUST00000034856 1780 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Hmgb3O54879 Apol7c-201ENSMUST00000062562 2044 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Hmgb3O54879 Zscan12-203ENSMUST00000225545 4405 ntAPPRIS P1 BASIC10.72□□□□□ -0.69
Hmgb3O54879 Nol4-204ENSMUST00000097651 4549 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
Hmgb3O54879 Itfg2-201ENSMUST00000001559 2320 ntAPPRIS P2 TSL 1 (best) BASIC10.72□□□□□ -0.69
Hmgb3O54879 Mid1-215ENSMUST00000171433 2546 ntAPPRIS P1 TSL 5 BASIC10.72□□□□□ -0.69
Hmgb3O54879 Ptgir-201ENSMUST00000086101 2725 ntTSL 1 (best) BASIC10.71□□□□□ -0.69
Hmgb3O54879 Lamb1-205ENSMUST00000169088 5557 ntAPPRIS P1 TSL 5 BASIC10.71□□□□□ -0.69
Hmgb3O54879 Ints5-201ENSMUST00000096249 3294 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Hmgb3O54879 Pbrm1-208ENSMUST00000112098 6566 ntTSL 5 BASIC10.71□□□□□ -0.69
Hmgb3O54879 Sspn-201ENSMUST00000032383 4431 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Hmgb3O54879 Tyk2-201ENSMUST00000001036 4619 ntAPPRIS P2 TSL 5 BASIC10.71□□□□□ -0.69
Hmgb3O54879 Arnt-203ENSMUST00000102749 2699 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Hmgb3O54879 Npr2-202ENSMUST00000107874 3480 ntTSL 5 BASIC10.71□□□□□ -0.69
Hmgb3O54879 Pltp-203ENSMUST00000109317 1575 ntTSL 5 BASIC10.71□□□□□ -0.69
Hmgb3O54879 Calm1-202ENSMUST00000110082 4115 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Hmgb3O54879 Epo-202ENSMUST00000111038 855 ntAPPRIS P3 TSL 5 BASIC10.71□□□□□ -0.69
Hmgb3O54879 Rhno1-202ENSMUST00000112151 1108 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Hmgb3O54879 Cngb1-203ENSMUST00000120044 3243 ntAPPRIS ALT2 TSL 5 BASIC10.71□□□□□ -0.69
Hmgb3O54879 Gm11745-201ENSMUST00000121669 448 ntBASIC10.71□□□□□ -0.69
Hmgb3O54879 Serpinf1-202ENSMUST00000125982 605 ntTSL 1 (best) BASIC10.71□□□□□ -0.69
Hmgb3O54879 Ndufa1-201ENSMUST00000016571 419 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Hmgb3O54879 Mir3113-201ENSMUST00000175478 76 ntBASIC10.71□□□□□ -0.69
Hmgb3O54879 1700029H14Rik-205ENSMUST00000187391 1408 ntAPPRIS P3 TSL 1 (best) BASIC10.71□□□□□ -0.69
Hmgb3O54879 Ybx1-ps2-201ENSMUST00000201305 957 ntBASIC10.71□□□□□ -0.69
Hmgb3O54879 Gm18049-201ENSMUST00000208909 581 ntBASIC10.71□□□□□ -0.69
Hmgb3O54879 Tmem25-201ENSMUST00000002100 2448 ntAPPRIS P2 TSL 1 (best) BASIC10.71□□□□□ -0.69
Hmgb3O54879 Iqcm-203ENSMUST00000212704 2035 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Hmgb3O54879 Pcsk7-209ENSMUST00000216672 3599 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Hmgb3O54879 Slc39a14-201ENSMUST00000022688 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC10.71□□□□□ -0.69
Hmgb3O54879 Dhrs1-201ENSMUST00000002403 1477 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Hmgb3O54879 Invs-201ENSMUST00000030029 5633 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Hmgb3O54879 Espn-201ENSMUST00000030785 3406 ntAPPRIS P2 TSL 1 (best) BASIC10.71□□□□□ -0.69
Hmgb3O54879 Tmem116-201ENSMUST00000031405 1288 ntAPPRIS ALT2 TSL 1 (best) BASIC10.71□□□□□ -0.69
Hmgb3O54879 Slc7a6-201ENSMUST00000034378 3750 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Hmgb3O54879 2600006K01Rik-201ENSMUST00000047607 1406 ntTSL 1 (best) BASIC10.71□□□□□ -0.69
Hmgb3O54879 Pcdhb21-201ENSMUST00000061405 4705 ntAPPRIS P1 BASIC10.71□□□□□ -0.69
Hmgb3O54879 Mrps36-202ENSMUST00000078573 571 ntAPPRIS ALT1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Hmgb3O54879 Kif1a-201ENSMUST00000086819 5097 ntTSL 1 (best) BASIC10.71□□□□□ -0.69
Hmgb3O54879 Hist1h4j-201ENSMUST00000087714 774 ntAPPRIS P1 BASIC10.71□□□□□ -0.69
Hmgb3O54879 Tbx6-201ENSMUST00000094037 1727 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Hmgb3O54879 Wdr18-201ENSMUST00000045247 3911 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.7
Hmgb3O54879 Ttll12-201ENSMUST00000016901 3220 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.7
Hmgb3O54879 Gm32479-201ENSMUST00000204226 2739 ntTSL 2 BASIC10.71□□□□□ -0.7
Hmgb3O54879 Rbm11-203ENSMUST00000114253 2699 ntAPPRIS P2 TSL 1 (best) BASIC10.71□□□□□ -0.7
Hmgb3O54879 Necap1-201ENSMUST00000032477 2476 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Hmgb3O54879 Misp-201ENSMUST00000046833 2414 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Hmgb3O54879 Fibcd1-201ENSMUST00000028188 4751 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Hmgb3O54879 Rad9b-202ENSMUST00000117263 2371 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
Hmgb3O54879 Dtnb-201ENSMUST00000077930 2376 ntAPPRIS P2 TSL 1 (best) BASIC10.7□□□□□ -0.7
Hmgb3O54879 Zfp429-202ENSMUST00000181071 2117 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
Hmgb3O54879 Slc12a8-206ENSMUST00000122427 2070 ntAPPRIS ALT2 TSL 5 BASIC10.7□□□□□ -0.7
Hmgb3O54879 A930007I19Rik-203ENSMUST00000181726 2099 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
Hmgb3O54879 Bcat2-203ENSMUST00000209204 2081 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
Hmgb3O54879 Apol6-201ENSMUST00000127957 2034 ntAPPRIS P4 TSL 2 BASIC10.7□□□□□ -0.7
Hmgb3O54879 Vat1l-201ENSMUST00000049509 3666 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Hmgb3O54879 Csrnp3-202ENSMUST00000112394 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC10.7□□□□□ -0.7
Hmgb3O54879 Ercc2-202ENSMUST00000108460 3485 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
Hmgb3O54879 Spcs3-201ENSMUST00000067476 3466 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Hmgb3O54879 Nhlrc3-201ENSMUST00000056749 5047 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Hmgb3O54879 4632427E13Rik-202ENSMUST00000147198 6559 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
Hmgb3O54879 BC051019-201ENSMUST00000033334 1626 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Hmgb3O54879 Itfg2-203ENSMUST00000142615 3191 ntAPPRIS ALT2 TSL 1 (best) BASIC10.7□□□□□ -0.7
Hmgb3O54879 Ptx4-201ENSMUST00000054930 1582 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Hmgb3O54879 Rara-207ENSMUST00000164748 3129 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Hmgb3O54879 D630014O11Rik-201ENSMUST00000160562 3019 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
Hmgb3O54879 S1pr1-201ENSMUST00000055676 3046 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Hmgb3O54879 D830024N08Rik-201ENSMUST00000212132 2899 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
Hmgb3O54879 Nt5c3b-205ENSMUST00000107399 1427 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
Hmgb3O54879 C920006O11Rik-201ENSMUST00000180974 1444 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
Hmgb3O54879 Gm43650-201ENSMUST00000197337 1382 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
Hmgb3O54879 Gm30214-201ENSMUST00000199271 1383 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
Hmgb3O54879 Bahcc1-203ENSMUST00000122148 10712 ntAPPRIS ALT2 TSL 1 (best) BASIC10.7□□□□□ -0.7
Retrieved 100 of 76,532 protein–RNA pairs in 46.2 ms