Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Hoxd3-203ENSMUST00000111983 2968 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Scn4aQ9ER60 Mrps17-207ENSMUST00000121813 868 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Scn4aQ9ER60 Gm13572-201ENSMUST00000153675 559 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Scn4aQ9ER60 AC154436.1-201ENSMUST00000227272 782 ntBASIC17.23■□□□□ 0.35
Scn4aQ9ER60 Ensa-202ENSMUST00000058230 1130 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Scn4aQ9ER60 Fnbp1-202ENSMUST00000075326 1761 ntTSL 5 BASIC17.23■□□□□ 0.35
Scn4aQ9ER60 Vamp4-203ENSMUST00000132158 2752 ntTSL 3 BASIC17.23■□□□□ 0.35
Scn4aQ9ER60 Mmp2-201ENSMUST00000034187 3078 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Scn4aQ9ER60 Brd4-202ENSMUST00000114475 2731 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Scn4aQ9ER60 Cacul1-201ENSMUST00000081790 5790 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
Scn4aQ9ER60 Rad9a-201ENSMUST00000025740 2046 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Scn4aQ9ER60 Cpn1-201ENSMUST00000026210 1828 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Scn4aQ9ER60 Tbc1d22bos-202ENSMUST00000163069 1349 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Scn4aQ9ER60 Mme-206ENSMUST00000194150 3345 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Scn4aQ9ER60 Lemd1-201ENSMUST00000112357 964 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
Scn4aQ9ER60 Gm10169-201ENSMUST00000121822 348 ntBASIC17.22■□□□□ 0.35
Scn4aQ9ER60 Gm16538-201ENSMUST00000162407 442 ntTSL 2 BASIC17.22■□□□□ 0.35
Scn4aQ9ER60 Gm24954-201ENSMUST00000178831 110 ntBASIC17.22■□□□□ 0.35
Scn4aQ9ER60 Gm29304-201ENSMUST00000186555 695 ntBASIC17.22■□□□□ 0.35
Scn4aQ9ER60 Gm29223-201ENSMUST00000188867 695 ntBASIC17.22■□□□□ 0.35
Scn4aQ9ER60 Gm37921-201ENSMUST00000194333 695 ntBASIC17.22■□□□□ 0.35
Scn4aQ9ER60 Gm37782-201ENSMUST00000194879 678 ntBASIC17.22■□□□□ 0.35
Scn4aQ9ER60 Gm5714-201ENSMUST00000197343 566 ntBASIC17.22■□□□□ 0.35
Scn4aQ9ER60 Pgpep1l-202ENSMUST00000207874 677 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
Scn4aQ9ER60 AC170997.1-201ENSMUST00000214554 1053 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Scn4aQ9ER60 BC106175-202ENSMUST00000219344 1213 ntBASIC17.22■□□□□ 0.35
Scn4aQ9ER60 Prr13-201ENSMUST00000023810 1224 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Scn4aQ9ER60 Ablim1-209ENSMUST00000111546 2267 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
Scn4aQ9ER60 Tbc1d8-204ENSMUST00000193823 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Scn4aQ9ER60 BB123696-201ENSMUST00000222580 2056 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Scn4aQ9ER60 Senp3-201ENSMUST00000005336 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Scn4aQ9ER60 R3hdm2-212ENSMUST00000166820 4281 ntAPPRIS P2 TSL 5 BASIC17.22■□□□□ 0.35
Scn4aQ9ER60 Tc2n-203ENSMUST00000160830 2005 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Scn4aQ9ER60 Tcf25-205ENSMUST00000212470 2572 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Scn4aQ9ER60 Jph4-201ENSMUST00000022819 4489 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Scn4aQ9ER60 Cdr2l-201ENSMUST00000053288 3700 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Scn4aQ9ER60 Lipo3-201ENSMUST00000025694 2768 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Scn4aQ9ER60 Gm10479-201ENSMUST00000101568 318 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
Scn4aQ9ER60 Gm14942-201ENSMUST00000119642 336 ntBASIC17.21■□□□□ 0.35
Scn4aQ9ER60 Rpl19-ps1-201ENSMUST00000121059 591 ntBASIC17.21■□□□□ 0.35
Scn4aQ9ER60 Gm8451-201ENSMUST00000170338 447 ntBASIC17.21■□□□□ 0.35
Scn4aQ9ER60 Gm8815-201ENSMUST00000173809 620 ntBASIC17.21■□□□□ 0.35
Scn4aQ9ER60 Eef1b2-209ENSMUST00000188524 681 ntTSL 3 BASIC17.21■□□□□ 0.35
Scn4aQ9ER60 Cabcoco1-201ENSMUST00000020103 1262 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Scn4aQ9ER60 Gm5599-201ENSMUST00000209602 788 ntBASIC17.21■□□□□ 0.35
Scn4aQ9ER60 Gm7536-201ENSMUST00000077389 444 ntBASIC17.21■□□□□ 0.35
Scn4aQ9ER60 Gm5453-201ENSMUST00000080866 447 ntBASIC17.21■□□□□ 0.35
Scn4aQ9ER60 Tjp1-202ENSMUST00000102592 7049 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
Scn4aQ9ER60 Ccndbp1-203ENSMUST00000099489 1632 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Scn4aQ9ER60 Fyn-207ENSMUST00000146287 2135 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Scn4aQ9ER60 Fmnl2-202ENSMUST00000050719 3380 ntTSL 5 BASIC17.21■□□□□ 0.35
Scn4aQ9ER60 Kcnh4-202ENSMUST00000107363 3948 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
Scn4aQ9ER60 Dnm2-211ENSMUST00000173397 3510 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Scn4aQ9ER60 Sertm1-202ENSMUST00000162201 2899 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Scn4aQ9ER60 Ighv7-1-201ENSMUST00000103474 363 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
Scn4aQ9ER60 Gm12712-201ENSMUST00000120676 801 ntBASIC17.21■□□□□ 0.35
Scn4aQ9ER60 Gm15722-201ENSMUST00000159271 661 ntTSL 3 BASIC17.21■□□□□ 0.35
Scn4aQ9ER60 Dydc1-203ENSMUST00000189865 995 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Scn4aQ9ER60 Ighv1-2-201ENSMUST00000195325 378 ntBASIC17.21■□□□□ 0.35
Scn4aQ9ER60 AC130477.1-201ENSMUST00000226982 420 ntBASIC17.21■□□□□ 0.35
Scn4aQ9ER60 Nmi-201ENSMUST00000028314 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Scn4aQ9ER60 Gm5705-201ENSMUST00000066241 711 ntBASIC17.21■□□□□ 0.35
Scn4aQ9ER60 Adtrp-202ENSMUST00000121404 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Scn4aQ9ER60 Camta1-204ENSMUST00000105670 4961 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Scn4aQ9ER60 Ece2-201ENSMUST00000003898 3152 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
Scn4aQ9ER60 Serpinb2-201ENSMUST00000009356 1970 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
Scn4aQ9ER60 Mon2-202ENSMUST00000073792 9301 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.34
Scn4aQ9ER60 Gm28386-201ENSMUST00000189147 1849 ntBASIC17.21■□□□□ 0.34
Scn4aQ9ER60 Hes2-201ENSMUST00000030782 2521 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Scn4aQ9ER60 Kdm8-201ENSMUST00000033010 2389 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Scn4aQ9ER60 Dnlz-201ENSMUST00000028295 2916 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Scn4aQ9ER60 Nrf1-209ENSMUST00000115209 2406 ntTSL 5 BASIC17.2■□□□□ 0.34
Scn4aQ9ER60 Gprc5a-201ENSMUST00000050104 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Scn4aQ9ER60 Gm12069-201ENSMUST00000145127 806 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Scn4aQ9ER60 Gm22846-201ENSMUST00000157706 270 ntBASIC17.2■□□□□ 0.34
Scn4aQ9ER60 Gm2696-202ENSMUST00000220393 684 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
Scn4aQ9ER60 Crocc-211ENSMUST00000168157 6244 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Scn4aQ9ER60 Crocc-201ENSMUST00000040222 6248 ntTSL 5 BASIC17.2■□□□□ 0.34
Scn4aQ9ER60 Gm26826-201ENSMUST00000181317 1395 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Scn4aQ9ER60 Bpifb4-201ENSMUST00000099181 1479 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Scn4aQ9ER60 AC122018.1-201ENSMUST00000217769 1686 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Scn4aQ9ER60 Sec31a-201ENSMUST00000094578 4228 ntAPPRIS P2 TSL 5 BASIC17.2■□□□□ 0.34
Scn4aQ9ER60 Gm11986-201ENSMUST00000149481 1439 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Scn4aQ9ER60 Slc7a7-209ENSMUST00000226753 2126 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
Scn4aQ9ER60 Slc7a7-201ENSMUST00000000984 2132 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Scn4aQ9ER60 Plekhg3-201ENSMUST00000075249 5138 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Scn4aQ9ER60 Tmem169-201ENSMUST00000027380 2928 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Scn4aQ9ER60 Gm16686-201ENSMUST00000141816 396 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
Scn4aQ9ER60 Gm15524-201ENSMUST00000159874 463 ntTSL 3 BASIC17.19■□□□□ 0.34
Scn4aQ9ER60 Gm29418-201ENSMUST00000186162 647 ntTSL 5 BASIC17.19■□□□□ 0.34
Scn4aQ9ER60 Nkg7-201ENSMUST00000070518 881 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Scn4aQ9ER60 Il34-204ENSMUST00000150680 1796 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Scn4aQ9ER60 Adcyap1-201ENSMUST00000064775 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Scn4aQ9ER60 Arfgap1-205ENSMUST00000108862 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Scn4aQ9ER60 Gm21451-201ENSMUST00000111062 2775 ntBASIC17.19■□□□□ 0.34
Scn4aQ9ER60 P3h1-203ENSMUST00000102662 2977 ntAPPRIS P3 TSL 5 BASIC17.19■□□□□ 0.34
Scn4aQ9ER60 Ppp1r12b-202ENSMUST00000086444 3137 ntAPPRIS P2 TSL 5 BASIC17.19■□□□□ 0.34
Scn4aQ9ER60 Lins1-202ENSMUST00000077967 2647 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
Scn4aQ9ER60 C130050O18Rik-202ENSMUST00000163940 1618 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Scn4aQ9ER60 Bcat1-202ENSMUST00000048252 1642 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 47.1 ms